Wall clock time and date at job start Mon Mar 30 2020 03:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47144 * 2 1 4 4 H 1.08997 * 109.47012 * 303.44995 * 3 2 1 5 5 C 1.50698 * 109.47461 * 183.44609 * 3 2 1 6 6 H 1.08000 * 119.99923 * 240.00118 * 5 3 2 7 7 C 1.37877 * 119.99917 * 59.99933 * 5 3 2 8 8 N 1.31515 * 119.99959 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99736 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46958 * 269.99732 * 9 7 5 11 11 H 1.48499 * 109.47372 * 30.00025 * 9 7 5 12 12 H 1.48505 * 109.46777 * 150.00063 * 9 7 5 13 13 N 1.46904 * 109.46757 * 63.44519 * 3 2 1 14 14 C 1.47904 * 110.99818 * 181.79044 * 13 3 2 15 15 C 1.53991 * 107.05856 * 214.15488 * 14 13 3 16 16 C 1.54595 * 105.13796 * 1.22950 * 15 14 13 17 17 H 1.09002 * 110.72040 * 263.59676 * 16 15 14 18 18 C 1.52998 * 110.72151 * 140.31654 * 16 15 14 19 19 N 1.46897 * 109.47601 * 66.45118 * 18 16 15 20 20 C 1.46895 * 111.00436 * 179.97438 * 19 18 16 21 21 C 1.48531 * 110.99855 * 64.39720 * 13 3 2 22 22 H 1.09005 * 109.46780 * 174.75717 * 1 2 3 23 23 H 1.08997 * 109.47227 * 294.76004 * 1 2 3 24 24 H 1.08995 * 109.47138 * 54.76298 * 1 2 3 25 25 H 1.09004 * 109.47325 * 240.00640 * 2 1 3 26 26 H 1.08997 * 109.47595 * 119.99941 * 2 1 3 27 27 H 0.97001 * 119.99447 * 179.97438 * 8 7 5 28 28 H 1.08998 * 109.91650 * 333.51166 * 14 13 3 29 29 H 1.09000 * 109.91205 * 94.60478 * 14 13 3 30 30 H 1.09000 * 110.30580 * 120.14264 * 15 14 13 31 31 H 1.08995 * 110.31060 * 242.30929 * 15 14 13 32 32 H 1.09005 * 109.46775 * 186.44954 * 18 16 15 33 33 H 1.08999 * 109.47344 * 306.44792 * 18 16 15 34 34 H 1.00904 * 110.99694 * 56.04440 * 19 18 16 35 35 H 1.08994 * 109.47683 * 179.97438 * 20 19 18 36 36 H 1.09002 * 109.47193 * 300.00254 * 20 19 18 37 37 H 1.09005 * 109.47097 * 59.99885 * 20 19 18 38 38 H 1.08995 * 110.66777 * 278.15198 * 21 13 3 39 39 H 1.08996 * 110.67140 * 41.28729 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6270 1.9739 -0.8574 5 6 3.5445 1.4435 -0.0854 6 1 4.1298 1.8951 0.7019 7 6 4.1739 0.8677 -1.1686 8 7 3.4612 0.3172 -2.1271 9 14 6.0389 0.8683 -1.2741 10 1 6.4946 2.0948 -1.9764 11 1 6.6122 0.8400 0.0955 12 1 6.4925 -0.3297 -2.0254 13 7 1.6194 2.1105 1.2389 14 6 2.0589 3.5227 1.2552 15 6 2.3890 3.8762 2.7172 16 6 2.1403 2.5746 3.5133 17 1 1.1454 2.5791 3.9586 18 6 3.2143 2.3825 4.5859 19 7 3.0868 3.4366 5.6010 20 6 4.1039 3.2834 6.6498 21 6 2.2491 1.4768 2.4255 22 1 -0.3633 -1.0234 -0.0939 23 1 -0.3633 0.4304 0.9332 24 1 -0.3633 0.5929 -0.8393 25 1 1.8934 -0.5137 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 3.9040 -0.0875 -2.8894 28 1 2.9469 3.6423 0.6345 29 1 1.2590 4.1647 0.8863 30 1 3.4318 4.1809 2.8064 31 1 1.7308 4.6689 3.0726 32 1 3.0873 1.4075 5.0567 33 1 4.2010 2.4382 4.1262 34 1 2.1586 3.4472 5.9967 35 1 3.9871 4.0768 7.3879 36 1 3.9827 2.3148 7.1347 37 1 5.0970 3.3451 6.2046 38 1 1.6982 0.5846 2.7229 39 1 3.2932 1.2365 2.2247 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070800023.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:46 Heat of formation + Delta-G solvation = -5.658129 kcal Electronic energy + Delta-G solvation = -16643.361279 eV Core-core repulsion = 14199.265379 eV Total energy + Delta-G solvation = -2444.095899 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.61285 -36.02707 -33.86038 -31.64227 -30.20821 -28.35221 -26.57821 -25.39778 -23.09153 -22.74836 -20.75127 -19.59309 -18.90412 -16.40384 -15.78352 -15.30515 -14.97978 -14.30033 -14.02130 -13.50363 -13.09641 -12.92426 -12.72502 -12.24498 -12.15510 -11.76912 -11.62555 -11.31554 -11.05311 -10.86158 -10.62906 -10.51659 -10.31324 -10.19368 -9.94237 -9.87589 -9.61812 -9.40295 -9.01806 -8.39365 -8.34341 -7.12100 -5.97360 -4.09917 3.26781 3.34180 3.36632 4.29304 4.40236 5.03528 5.25197 5.27887 5.30686 5.44791 5.50992 5.61953 5.81649 5.85737 5.96161 6.00114 6.29451 6.37899 6.38372 6.49439 6.55016 6.67837 6.73002 6.82628 6.93698 6.99737 7.05880 7.11599 7.22103 7.36569 7.39686 7.63205 7.77166 8.01843 8.19080 8.30658 8.47531 9.00872 9.56613 11.02056 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.023219 B = 0.008675 C = 0.007081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.630773 B = 3227.060651 C = 3953.254241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.109 4.109 3 C 0.204 3.796 4 H 0.038 0.962 5 C -0.541 4.541 6 H 0.058 0.942 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.885 3.115 10 H -0.281 1.281 11 H -0.276 1.276 12 H -0.286 1.286 13 N -0.515 5.515 14 C 0.034 3.966 15 C -0.107 4.107 16 C -0.092 4.092 17 H 0.069 0.931 18 C 0.067 3.933 19 N -0.693 5.693 20 C 0.028 3.972 21 C 0.048 3.952 22 H 0.024 0.976 23 H 0.045 0.955 24 H 0.039 0.961 25 H 0.091 0.909 26 H 0.030 0.970 27 H 0.261 0.739 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.027 0.973 33 H 0.072 0.928 34 H 0.338 0.662 35 H 0.063 0.937 36 H 0.018 0.982 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.490 3.257 11.517 12.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.148 4.148 3 C 0.097 3.903 4 H 0.056 0.944 5 C -0.580 4.580 6 H 0.076 0.924 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.713 3.287 10 H -0.207 1.207 11 H -0.201 1.201 12 H -0.212 1.212 13 N -0.239 5.239 14 C -0.094 4.094 15 C -0.145 4.145 16 C -0.111 4.111 17 H 0.088 0.912 18 C -0.062 4.062 19 N -0.323 5.323 20 C -0.122 4.122 21 C -0.081 4.081 22 H 0.043 0.957 23 H 0.064 0.936 24 H 0.058 0.942 25 H 0.109 0.891 26 H 0.049 0.951 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.045 0.955 33 H 0.091 0.909 34 H 0.155 0.845 35 H 0.082 0.918 36 H 0.036 0.964 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.668 3.571 10.972 11.659 hybrid contribution 1.675 -0.798 0.257 1.873 sum 0.007 2.773 11.230 11.567 Atomic orbital electron populations 1.21696 0.98883 0.98291 1.00538 1.21558 0.92178 0.99171 1.01881 1.19406 0.92823 0.91170 0.86905 0.94450 1.21726 0.92740 1.37508 1.05981 0.92385 1.24913 0.97807 0.95095 0.95639 1.69881 1.34868 1.37918 1.09678 0.86702 0.86342 0.77542 0.78065 1.20724 1.20060 1.21206 1.65087 1.53781 1.01140 1.03903 1.22755 0.99468 0.91674 0.95543 1.22246 1.00803 0.96544 0.94904 1.22098 0.97408 0.96768 0.94868 0.91230 1.22039 1.00097 0.91430 0.92648 1.60405 1.07449 1.49481 1.14940 1.22173 0.96620 0.99268 0.94135 1.23064 0.99462 0.95566 0.90035 0.95667 0.93605 0.94155 0.89076 0.95082 0.92929 0.92440 0.92602 0.92132 0.92472 0.95498 0.90927 0.84502 0.91790 0.96365 0.91845 0.92013 0.92138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.72 37.16 0.36 -2.47 16 2 C -0.11 -2.62 5.14 -26.73 -0.14 -2.76 16 3 C 0.20 5.06 1.79 -68.86 -0.12 4.94 16 4 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 5 C -0.54 -14.37 6.37 -34.44 -0.22 -14.59 16 6 H 0.06 1.55 6.02 -52.49 -0.32 1.23 16 7 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 8 N -0.89 -24.92 11.30 55.43 0.63 -24.29 16 9 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 N -0.52 -11.07 4.77 -223.89 -1.07 -12.14 16 14 C 0.03 0.68 6.35 -2.75 -0.02 0.66 16 15 C -0.11 -1.80 6.33 -25.38 -0.16 -1.96 16 16 C -0.09 -1.47 3.25 -88.76 -0.29 -1.76 16 17 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 18 C 0.07 0.96 5.01 -3.83 -0.02 0.94 16 19 N -0.69 -8.63 6.67 -121.14 -0.81 -9.43 16 20 C 0.03 0.29 10.70 60.06 0.64 0.94 16 21 C 0.05 0.93 4.79 -1.90 -0.01 0.92 16 22 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 23 H 0.04 0.91 7.86 -51.93 -0.41 0.50 16 24 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.09 2.43 5.98 -51.93 -0.31 2.12 16 26 H 0.03 0.73 6.89 -51.93 -0.36 0.37 16 27 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.06 1.28 6.42 -51.93 -0.33 0.95 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.06 1.04 7.80 -51.93 -0.41 0.63 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 1.13 8.08 -51.93 -0.42 0.71 16 34 H 0.34 3.74 8.81 -39.29 -0.35 3.39 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 1.18 7.60 -51.93 -0.39 0.79 16 39 H 0.06 1.32 5.84 -51.93 -0.30 1.01 16 LS Contribution 299.38 15.07 4.51 4.51 Total: -1.00 -27.34 299.38 -8.78 -36.12 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -6.96 Total: 2.54 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: -0.07 Total: -13.39 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: -1.25 Total: -45.87 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -27.34 -8.78 -36.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070800023.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.459 kcal (2) G-P(sol) polarization free energy of solvation -27.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds