Wall clock time and date at job start Mon Mar 30 2020 03:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47144 * 2 1 4 4 H 1.08997 * 109.47012 * 303.44995 * 3 2 1 5 5 C 1.50698 * 109.47461 * 183.44609 * 3 2 1 6 6 H 1.08000 * 119.99923 * 240.00118 * 5 3 2 7 7 C 1.37877 * 119.99917 * 59.99933 * 5 3 2 8 8 N 1.31515 * 119.99959 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99736 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46958 * 269.99732 * 9 7 5 11 11 H 1.48499 * 109.47372 * 30.00025 * 9 7 5 12 12 H 1.48505 * 109.46777 * 150.00063 * 9 7 5 13 13 N 1.46904 * 109.46757 * 63.44519 * 3 2 1 14 14 C 1.47904 * 110.99818 * 181.79044 * 13 3 2 15 15 C 1.53991 * 107.05856 * 214.15488 * 14 13 3 16 16 C 1.54595 * 105.13796 * 1.22950 * 15 14 13 17 17 H 1.09002 * 110.72040 * 263.59676 * 16 15 14 18 18 C 1.52998 * 110.72151 * 140.31654 * 16 15 14 19 19 N 1.46897 * 109.47601 * 66.45118 * 18 16 15 20 20 C 1.46895 * 111.00436 * 179.97438 * 19 18 16 21 21 C 1.48531 * 110.99855 * 64.39720 * 13 3 2 22 22 H 1.09005 * 109.46780 * 174.75717 * 1 2 3 23 23 H 1.08997 * 109.47227 * 294.76004 * 1 2 3 24 24 H 1.08995 * 109.47138 * 54.76298 * 1 2 3 25 25 H 1.09004 * 109.47325 * 240.00640 * 2 1 3 26 26 H 1.08997 * 109.47595 * 119.99941 * 2 1 3 27 27 H 0.97001 * 119.99447 * 179.97438 * 8 7 5 28 28 H 1.08998 * 109.91650 * 333.51166 * 14 13 3 29 29 H 1.09000 * 109.91205 * 94.60478 * 14 13 3 30 30 H 1.09000 * 110.30580 * 120.14264 * 15 14 13 31 31 H 1.08995 * 110.31060 * 242.30929 * 15 14 13 32 32 H 1.09005 * 109.46775 * 186.44954 * 18 16 15 33 33 H 1.08999 * 109.47344 * 306.44792 * 18 16 15 34 34 H 1.00904 * 110.99694 * 56.04440 * 19 18 16 35 35 H 1.08994 * 109.47683 * 179.97438 * 20 19 18 36 36 H 1.09002 * 109.47193 * 300.00254 * 20 19 18 37 37 H 1.09005 * 109.47097 * 59.99885 * 20 19 18 38 38 H 1.08995 * 110.66777 * 278.15198 * 21 13 3 39 39 H 1.08996 * 110.67140 * 41.28729 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6270 1.9739 -0.8574 5 6 3.5445 1.4435 -0.0854 6 1 4.1298 1.8951 0.7019 7 6 4.1739 0.8677 -1.1686 8 7 3.4612 0.3172 -2.1271 9 14 6.0389 0.8683 -1.2741 10 1 6.4946 2.0948 -1.9764 11 1 6.6122 0.8400 0.0955 12 1 6.4925 -0.3297 -2.0254 13 7 1.6194 2.1105 1.2389 14 6 2.0589 3.5227 1.2552 15 6 2.3890 3.8762 2.7172 16 6 2.1403 2.5746 3.5133 17 1 1.1454 2.5791 3.9586 18 6 3.2143 2.3825 4.5859 19 7 3.0868 3.4366 5.6010 20 6 4.1039 3.2834 6.6498 21 6 2.2491 1.4768 2.4255 22 1 -0.3633 -1.0234 -0.0939 23 1 -0.3633 0.4304 0.9332 24 1 -0.3633 0.5929 -0.8393 25 1 1.8934 -0.5137 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 3.9040 -0.0875 -2.8894 28 1 2.9469 3.6423 0.6345 29 1 1.2590 4.1647 0.8863 30 1 3.4318 4.1809 2.8064 31 1 1.7308 4.6689 3.0726 32 1 3.0873 1.4075 5.0567 33 1 4.2010 2.4382 4.1262 34 1 2.1586 3.4472 5.9967 35 1 3.9871 4.0768 7.3879 36 1 3.9827 2.3148 7.1347 37 1 5.0970 3.3451 6.2046 38 1 1.6982 0.5846 2.7229 39 1 3.2932 1.2365 2.2247 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070800023.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:45 Heat of formation + Delta-G solvation = -24.096765 kcal Electronic energy + Delta-G solvation = -16644.160838 eV Core-core repulsion = 14199.265379 eV Total energy + Delta-G solvation = -2444.895459 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.19553 -37.31891 -35.50625 -33.59763 -31.70567 -29.89945 -28.33926 -26.77774 -24.84004 -23.96600 -22.41214 -20.98452 -20.79508 -18.38753 -17.20377 -16.75133 -16.45248 -15.88647 -15.27535 -14.96072 -14.73684 -14.59282 -14.26525 -13.91638 -13.50490 -13.28968 -13.07978 -12.76543 -12.71489 -12.62765 -12.41009 -12.21320 -11.93429 -11.66463 -11.59051 -11.51189 -11.41771 -11.21352 -10.92738 -10.43344 -9.35229 -8.96370 -8.03621 -6.24695 1.35522 1.37532 1.46018 2.39220 3.14895 3.25912 3.56746 3.98584 4.08317 4.12157 4.48262 4.50814 4.59315 4.63083 4.67293 4.73303 4.75088 4.87079 4.91491 4.94382 5.04637 5.06852 5.16032 5.20965 5.29856 5.35530 5.44963 5.46615 5.59695 5.62620 5.79107 6.02421 6.07267 6.19844 6.39878 6.52842 6.56335 6.96907 7.44854 8.92226 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.023219 B = 0.008675 C = 0.007081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.630773 B = 3227.060651 C = 3953.254241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.104 4.104 3 C 0.210 3.790 4 H -0.001 1.001 5 C -0.546 4.546 6 H 0.052 0.948 7 C 0.020 3.980 8 N -0.912 5.912 9 Si 0.944 3.056 10 H -0.279 1.279 11 H -0.271 1.271 12 H -0.282 1.282 13 N -0.515 5.515 14 C 0.032 3.968 15 C -0.096 4.096 16 C -0.078 4.078 17 H 0.087 0.913 18 C 0.076 3.924 19 N -0.698 5.698 20 C 0.028 3.972 21 C 0.048 3.952 22 H 0.045 0.955 23 H 0.056 0.944 24 H 0.032 0.968 25 H 0.061 0.939 26 H 0.030 0.970 27 H 0.261 0.739 28 H 0.027 0.973 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.079 0.921 32 H 0.035 0.965 33 H 0.055 0.945 34 H 0.349 0.651 35 H 0.082 0.918 36 H 0.025 0.975 37 H 0.055 0.945 38 H 0.066 0.934 39 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.647 3.652 13.541 14.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.143 4.143 3 C 0.103 3.897 4 H 0.017 0.983 5 C -0.585 4.585 6 H 0.070 0.930 7 C -0.180 4.180 8 N -0.551 5.551 9 Si 0.771 3.229 10 H -0.205 1.205 11 H -0.196 1.196 12 H -0.208 1.208 13 N -0.239 5.239 14 C -0.097 4.097 15 C -0.134 4.134 16 C -0.097 4.097 17 H 0.105 0.895 18 C -0.053 4.053 19 N -0.330 5.330 20 C -0.122 4.122 21 C -0.081 4.081 22 H 0.065 0.935 23 H 0.075 0.925 24 H 0.051 0.949 25 H 0.080 0.920 26 H 0.049 0.951 27 H 0.070 0.930 28 H 0.045 0.955 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.167 0.833 35 H 0.101 0.899 36 H 0.044 0.956 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -1.830 3.975 13.018 13.734 hybrid contribution 1.698 -0.890 -0.359 1.951 sum -0.131 3.085 12.659 13.030 Atomic orbital electron populations 1.21558 0.96244 0.99641 1.00758 1.21401 0.94498 0.98064 1.00297 1.19171 0.91771 0.91555 0.87245 0.98269 1.21938 0.93847 1.36975 1.05734 0.93000 1.25613 1.01819 0.95032 0.95491 1.70007 1.36335 1.38652 1.10111 0.85771 0.81568 0.77518 0.78089 1.20491 1.19600 1.20782 1.65022 1.53779 1.01845 1.03219 1.22796 0.98376 0.91032 0.97493 1.22160 1.01006 0.97596 0.92608 1.22000 0.99027 0.94480 0.94232 0.89510 1.21828 0.98307 0.92534 0.92666 1.60344 1.08639 1.48561 1.15432 1.22216 0.95644 1.00438 0.93870 1.23053 0.97647 0.96976 0.90401 0.93549 0.92514 0.94886 0.92033 0.95129 0.92965 0.95489 0.91849 0.92598 0.90235 0.94713 0.92690 0.83296 0.89948 0.95603 0.92585 0.91571 0.94766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.07 9.72 71.98 0.70 -4.37 16 2 C -0.10 -5.04 5.14 30.59 0.16 -4.88 16 3 C 0.21 10.71 1.79 44.17 0.08 10.79 16 4 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 5 C -0.55 -29.73 6.37 25.60 0.16 -29.57 16 6 H 0.05 2.84 6.02 -2.91 -0.02 2.82 16 7 C 0.02 1.11 5.30 84.65 0.45 1.56 16 8 N -0.91 -52.59 11.30 21.45 0.24 -52.35 16 9 Si 0.94 43.90 29.54 68.60 2.03 45.93 16 10 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 11 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 12 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 13 N -0.52 -22.10 4.77 -862.25 -4.11 -26.21 16 14 C 0.03 1.26 6.35 86.44 0.55 1.80 16 15 C -0.10 -3.05 6.33 31.47 0.20 -2.85 16 16 C -0.08 -2.33 3.25 -9.59 -0.03 -2.36 16 17 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 18 C 0.08 2.02 5.01 86.30 0.43 2.45 16 19 N -0.70 -15.37 6.67 -537.16 -3.58 -18.96 16 20 C 0.03 0.51 10.70 127.69 1.37 1.87 16 21 C 0.05 1.83 4.79 86.65 0.42 2.25 16 22 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 23 H 0.06 2.17 7.86 -2.39 -0.02 2.15 16 24 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.06 3.36 5.98 -2.38 -0.01 3.35 16 26 H 0.03 1.44 6.89 -2.39 -0.02 1.42 16 27 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 28 H 0.03 1.23 6.42 -2.39 -0.02 1.21 16 29 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.06 1.84 7.80 -2.39 -0.02 1.82 16 31 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.03 0.87 8.14 -2.38 -0.02 0.85 16 33 H 0.05 1.65 8.08 -2.39 -0.02 1.63 16 34 H 0.35 6.48 8.81 -89.69 -0.79 5.69 16 35 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 37 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 38 H 0.07 2.45 7.60 -2.39 -0.02 2.43 16 39 H 0.03 1.50 5.84 -2.39 -0.01 1.48 16 Total: -1.00 -59.04 299.38 -0.74 -59.78 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 0.21 Total: 15.12 kcal Atomic # 6 Polarization: -27.79 SS G_CDS: 4.48 Total: -23.31 kcal Atomic # 7 Polarization: -90.06 SS G_CDS: -7.45 Total: -97.51 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -59.04 -0.74 -59.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070800023.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.682 kcal (2) G-P(sol) polarization free energy of solvation -59.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds