Wall clock time and date at job start Mon Mar 30 2020 03:03:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.53000 * 109.46629 * 2 1
4 4 H 1.08999 * 109.49279 * 54.50428 * 3 2 1
5 5 C 1.53055 * 109.48806 * 294.43900 * 3 2 1
6 6 N 1.46960 * 109.36299 * 181.63338 * 5 3 2
7 7 C 1.46901 * 111.00134 * 183.18872 * 6 5 3
8 8 C 1.52994 * 109.47448 * 170.15431 * 7 6 5
9 9 C 1.50696 * 109.47475 * 180.02562 * 8 7 6
10 10 H 1.08005 * 120.00041 * 0.02562 * 9 8 7
11 11 C 1.37879 * 120.00372 * 179.97438 * 9 8 7
12 12 N 1.31508 * 119.99499 * 0.02562 * 11 9 8
13 13 Si 1.86795 * 120.00276 * 180.02562 * 11 9 8
14 14 H 1.48505 * 109.46862 * 359.97438 * 13 11 9
15 15 H 1.48496 * 109.47416 * 120.00281 * 13 11 9
16 16 H 1.48501 * 109.47278 * 240.00459 * 13 11 9
17 17 C 1.46958 * 110.87944 * 59.32164 * 6 5 3
18 18 C 1.53047 * 109.36616 * 300.67513 * 17 6 5
19 19 N 1.46959 * 109.48961 * 174.55170 * 3 2 1
20 20 C 1.46901 * 110.99582 * 303.15583 * 19 3 2
21 21 H 1.08999 * 109.47650 * 56.47309 * 1 2 3
22 22 H 1.08999 * 109.47092 * 296.46204 * 1 2 3
23 23 H 1.09005 * 109.47061 * 176.46840 * 1 2 3
24 24 H 1.08997 * 109.47479 * 120.00139 * 2 1 3
25 25 H 1.09001 * 109.47117 * 240.00328 * 2 1 3
26 26 H 1.08995 * 109.48980 * 301.59989 * 5 3 2
27 27 H 1.09000 * 109.49014 * 61.66634 * 5 3 2
28 28 H 1.09004 * 109.46992 * 290.15700 * 7 6 5
29 29 H 1.09004 * 109.46844 * 50.15543 * 7 6 5
30 30 H 1.09004 * 109.47243 * 300.00115 * 8 7 6
31 31 H 1.08999 * 109.47295 * 59.99810 * 8 7 6
32 32 H 0.97004 * 120.00115 * 179.97438 * 12 11 9
33 33 H 1.09000 * 109.48597 * 180.70913 * 17 6 5
34 34 H 1.09004 * 109.50609 * 60.65855 * 17 6 5
35 35 H 1.08995 * 109.49094 * 298.43801 * 18 17 6
36 36 H 1.08997 * 109.48738 * 178.36374 * 18 17 6
37 37 H 1.08996 * 109.47327 * 66.76664 * 20 19 3
38 38 H 1.09006 * 109.46743 * 186.76380 * 20 19 3
39 39 H 1.08993 * 109.47135 * 306.76051 * 20 19 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 1 1.5986 1.9843 0.8366
5 6 1.6472 2.1229 -1.3136
6 7 2.1719 3.4956 -1.3272
7 6 1.7512 4.2080 -2.5411
8 6 2.1021 5.6913 -2.4094
9 6 1.6700 6.4223 -3.6543
10 1 1.1924 5.8828 -4.4590
11 6 1.8834 7.7799 -3.7659
12 7 2.4645 8.4367 -2.7860
13 14 1.3471 8.6860 -5.3088
14 1 0.7232 7.7262 -6.2549
15 1 0.3625 9.7375 -4.9484
16 1 2.5299 9.3144 -5.9502
17 6 3.6356 3.4982 -1.1956
18 6 4.0282 2.8179 0.1179
19 7 3.5036 1.4452 0.1315
20 6 3.9242 0.7328 1.3454
21 1 -0.3634 0.5676 -0.8566
22 1 -0.3633 0.4579 0.9200
23 1 -0.3633 -1.0258 -0.0633
24 1 1.8934 -0.5138 0.8899
25 1 1.8933 -0.5138 -0.8900
26 1 2.0659 1.5653 -2.1513
27 1 0.5609 2.1479 -1.3996
28 1 2.2658 3.7882 -3.4055
29 1 0.6744 4.0995 -2.6712
30 1 1.5876 6.1111 -1.5450
31 1 3.1789 5.7998 -2.2792
32 1 2.6150 9.3918 -2.8645
33 1 3.9988 4.5259 -1.1957
34 1 4.0771 2.9564 -2.0320
35 1 3.6095 3.3755 0.9556
36 1 5.1145 2.7928 0.2039
37 1 3.6858 -0.3261 1.2463
38 1 4.9991 0.8520 1.4825
39 1 3.4002 1.1441 2.2081
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000082478124.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:03:12
Heat of formation + Delta-G solvation = -3.149278 kcal
Electronic energy + Delta-G solvation = -16277.677628 eV
Core-core repulsion = 13833.690520 eV
Total energy + Delta-G solvation = -2443.987108 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-39.35726 -35.77928 -33.75755 -32.94549 -30.10893 -29.25732 -27.24437 -24.49879
-24.40590 -22.78816 -21.52423 -19.76332 -19.41017 -16.53224 -15.66673 -15.35804
-14.98660 -14.49274 -14.46292 -14.10133 -13.67513 -13.35943 -13.14916 -12.63604
-12.21824 -12.11390 -11.93782 -11.80074 -11.36358 -11.16294 -10.97457 -10.89389
-10.71329 -10.61456 -10.47028 -10.17996 -9.80317 -9.29232 -9.07935 -8.31656
-8.23793 -7.66960 -5.97966 -4.00056 3.32456 3.39788 3.43945 3.97718
4.38622 4.55926 4.87642 5.02622 5.12755 5.30801 5.38127 5.40108
5.45886 5.50907 5.53597 5.70597 5.74415 5.78806 5.81571 5.95665
5.98769 6.01784 6.17551 6.27757 6.30357 6.37695 6.46835 6.54821
6.99701 7.12736 7.18077 7.55667 7.61796 7.83193 7.92487 8.10659
8.46002 9.07422 9.63552 11.13553
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.044049 B = 0.005510 C = 0.005054
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 635.506850 B = 5080.544689 C = 5538.467819
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C -0.117 4.117
3 C 0.087 3.913
4 H 0.048 0.952
5 C 0.061 3.939
6 N -0.542 5.542
7 C 0.064 3.936
8 C 0.028 3.972
9 C -0.520 4.520
10 H 0.054 0.946
11 C 0.058 3.942
12 N -0.894 5.894
13 Si 0.892 3.108
14 H -0.273 1.273
15 H -0.284 1.284
16 H -0.284 1.284
17 C 0.057 3.943
18 C 0.058 3.942
19 N -0.543 5.543
20 C 0.024 3.976
21 H 0.060 0.940
22 H 0.053 0.947
23 H 0.053 0.947
24 H 0.063 0.937
25 H 0.067 0.933
26 H 0.034 0.966
27 H 0.076 0.924
28 H 0.020 0.980
29 H 0.060 0.940
30 H 0.024 0.976
31 H 0.017 0.983
32 H 0.260 0.740
33 H 0.090 0.910
34 H 0.034 0.966
35 H 0.041 0.959
36 H 0.075 0.925
37 H 0.067 0.933
38 H 0.064 0.936
39 H 0.023 0.977
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.470 -15.531 6.994 17.040
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C -0.156 4.156
3 C -0.021 4.021
4 H 0.066 0.934
5 C -0.067 4.067
6 N -0.266 5.266
7 C -0.062 4.062
8 C -0.010 4.010
9 C -0.559 4.559
10 H 0.072 0.928
11 C -0.143 4.143
12 N -0.533 5.533
13 Si 0.720 3.280
14 H -0.198 1.198
15 H -0.210 1.210
16 H -0.210 1.210
17 C -0.072 4.072
18 C -0.070 4.070
19 N -0.268 5.268
20 C -0.124 4.124
21 H 0.079 0.921
22 H 0.072 0.928
23 H 0.072 0.928
24 H 0.081 0.919
25 H 0.086 0.914
26 H 0.052 0.948
27 H 0.094 0.906
28 H 0.038 0.962
29 H 0.078 0.922
30 H 0.042 0.958
31 H 0.035 0.965
32 H 0.069 0.931
33 H 0.108 0.892
34 H 0.053 0.947
35 H 0.059 0.941
36 H 0.093 0.907
37 H 0.086 0.914
38 H 0.083 0.917
39 H 0.042 0.958
Dipole moment (debyes) X Y Z Total
from point charges 0.530 -15.345 7.036 16.890
hybrid contribution -0.225 0.621 -0.801 1.038
sum 0.304 -14.724 6.235 15.993
Atomic orbital electron populations
1.21808 0.95518 1.01476 1.02254 1.21601 0.95705 0.95901 1.02347
1.21735 0.87014 0.95399 0.97975 0.93422 1.22190 0.99656 0.89362
0.95521 1.62248 1.09960 1.13603 1.40804 1.22312 0.99035 0.97412
0.87486 1.19097 0.96929 0.87730 0.97200 1.21239 1.39077 0.93161
1.02460 0.92754 1.24990 0.95291 0.97680 0.96352 1.69982 1.43062
1.08468 1.31795 0.86545 0.78332 0.79795 0.83377 1.19769 1.21000
1.21044 1.22166 0.88587 1.00931 0.95493 1.22204 0.99150 0.87516
0.98087 1.62169 1.10719 1.16342 1.37526 1.22374 1.00453 0.99060
0.90552 0.92121 0.92801 0.92795 0.91875 0.91405 0.94793 0.90618
0.96178 0.92178 0.95802 0.96494 0.93079 0.89171 0.94740 0.94102
0.90697 0.91399 0.91749 0.95803
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.52 9.76 37.16 0.36 -1.16 16
2 C -0.12 -1.29 5.23 -26.73 -0.14 -1.43 16
3 C 0.09 1.21 2.01 -67.65 -0.14 1.07 16
4 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16
5 C 0.06 0.98 4.62 -3.76 -0.02 0.96 16
6 N -0.54 -10.36 4.71 -234.46 -1.10 -11.47 16
7 C 0.06 1.40 4.90 -3.83 -0.02 1.38 16
8 C 0.03 0.74 4.90 -27.89 -0.14 0.60 16
9 C -0.52 -14.93 9.11 -34.44 -0.31 -15.25 16
10 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16
11 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16
12 N -0.89 -27.12 13.29 55.43 0.74 -26.38 16
13 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16
14 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16
15 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16
16 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16
17 C 0.06 1.01 5.41 -3.77 -0.02 0.99 16
18 C 0.06 0.87 5.61 -3.77 -0.02 0.85 16
19 N -0.54 -7.53 4.78 -234.73 -1.12 -8.65 16
20 C 0.02 0.26 8.98 60.07 0.54 0.80 16
21 H 0.06 0.64 6.46 -51.93 -0.34 0.30 16
22 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16
23 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16
24 H 0.06 0.63 6.21 -51.93 -0.32 0.31 16
25 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16
26 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16
27 H 0.08 1.15 6.52 -51.93 -0.34 0.82 16
28 H 0.02 0.44 8.12 -51.93 -0.42 0.02 16
29 H 0.06 1.29 8.03 -51.93 -0.42 0.87 16
30 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16
31 H 0.02 0.47 6.49 -51.93 -0.34 0.13 16
32 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16
33 H 0.09 1.76 6.33 -51.93 -0.33 1.44 16
34 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16
35 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16
36 H 0.07 0.99 8.07 -51.93 -0.42 0.57 16
37 H 0.07 0.66 6.53 -51.93 -0.34 0.32 16
38 H 0.06 0.64 8.02 -51.93 -0.42 0.23 16
39 H 0.02 0.26 8.11 -51.93 -0.42 -0.16 16
LS Contribution 299.70 15.07 4.52 4.52
Total: -1.00 -30.24 299.70 -9.01 -39.25
By element:
Atomic # 1 Polarization: 2.54 SS G_CDS: -7.02 Total: -4.48 kcal
Atomic # 6 Polarization: -9.59 SS G_CDS: 0.00 Total: -9.59 kcal
Atomic # 7 Polarization: -45.01 SS G_CDS: -1.49 Total: -46.50 kcal
Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal
Total LS contribution 4.52 Total: 4.52 kcal
Total: -30.24 -9.01 -39.25 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000082478124.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 36.102 kcal
(2) G-P(sol) polarization free energy of solvation -30.236 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.866 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.015 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.251 kcal
(6) G-S(sol) free energy of system = (1) + (5) -3.149 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds