Wall clock time and date at job start Mon Mar 30 2020 03:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46629 * 2 1 4 4 H 1.08999 * 109.49279 * 54.50428 * 3 2 1 5 5 C 1.53055 * 109.48806 * 294.43900 * 3 2 1 6 6 N 1.46960 * 109.36299 * 181.63338 * 5 3 2 7 7 C 1.46901 * 111.00134 * 183.18872 * 6 5 3 8 8 C 1.52994 * 109.47448 * 170.15431 * 7 6 5 9 9 C 1.50696 * 109.47475 * 180.02562 * 8 7 6 10 10 H 1.08005 * 120.00041 * 0.02562 * 9 8 7 11 11 C 1.37879 * 120.00372 * 179.97438 * 9 8 7 12 12 N 1.31508 * 119.99499 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00276 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.46862 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47416 * 120.00281 * 13 11 9 16 16 H 1.48501 * 109.47278 * 240.00459 * 13 11 9 17 17 C 1.46958 * 110.87944 * 59.32164 * 6 5 3 18 18 C 1.53047 * 109.36616 * 300.67513 * 17 6 5 19 19 N 1.46959 * 109.48961 * 174.55170 * 3 2 1 20 20 C 1.46901 * 110.99582 * 303.15583 * 19 3 2 21 21 H 1.08999 * 109.47650 * 56.47309 * 1 2 3 22 22 H 1.08999 * 109.47092 * 296.46204 * 1 2 3 23 23 H 1.09005 * 109.47061 * 176.46840 * 1 2 3 24 24 H 1.08997 * 109.47479 * 120.00139 * 2 1 3 25 25 H 1.09001 * 109.47117 * 240.00328 * 2 1 3 26 26 H 1.08995 * 109.48980 * 301.59989 * 5 3 2 27 27 H 1.09000 * 109.49014 * 61.66634 * 5 3 2 28 28 H 1.09004 * 109.46992 * 290.15700 * 7 6 5 29 29 H 1.09004 * 109.46844 * 50.15543 * 7 6 5 30 30 H 1.09004 * 109.47243 * 300.00115 * 8 7 6 31 31 H 1.08999 * 109.47295 * 59.99810 * 8 7 6 32 32 H 0.97004 * 120.00115 * 179.97438 * 12 11 9 33 33 H 1.09000 * 109.48597 * 180.70913 * 17 6 5 34 34 H 1.09004 * 109.50609 * 60.65855 * 17 6 5 35 35 H 1.08995 * 109.49094 * 298.43801 * 18 17 6 36 36 H 1.08997 * 109.48738 * 178.36374 * 18 17 6 37 37 H 1.08996 * 109.47327 * 66.76664 * 20 19 3 38 38 H 1.09006 * 109.46743 * 186.76380 * 20 19 3 39 39 H 1.08993 * 109.47135 * 306.76051 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5986 1.9843 0.8366 5 6 1.6472 2.1229 -1.3136 6 7 2.1719 3.4956 -1.3272 7 6 1.7512 4.2080 -2.5411 8 6 2.1021 5.6913 -2.4094 9 6 1.6700 6.4223 -3.6543 10 1 1.1924 5.8828 -4.4590 11 6 1.8834 7.7799 -3.7659 12 7 2.4645 8.4367 -2.7860 13 14 1.3471 8.6860 -5.3088 14 1 0.7232 7.7262 -6.2549 15 1 0.3625 9.7375 -4.9484 16 1 2.5299 9.3144 -5.9502 17 6 3.6356 3.4982 -1.1956 18 6 4.0282 2.8179 0.1179 19 7 3.5036 1.4452 0.1315 20 6 3.9242 0.7328 1.3454 21 1 -0.3634 0.5676 -0.8566 22 1 -0.3633 0.4579 0.9200 23 1 -0.3633 -1.0258 -0.0633 24 1 1.8934 -0.5138 0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 2.0659 1.5653 -2.1513 27 1 0.5609 2.1479 -1.3996 28 1 2.2658 3.7882 -3.4055 29 1 0.6744 4.0995 -2.6712 30 1 1.5876 6.1111 -1.5450 31 1 3.1789 5.7998 -2.2792 32 1 2.6150 9.3918 -2.8645 33 1 3.9988 4.5259 -1.1957 34 1 4.0771 2.9564 -2.0320 35 1 3.6095 3.3755 0.9556 36 1 5.1145 2.7928 0.2039 37 1 3.6858 -0.3261 1.2463 38 1 4.9991 0.8520 1.4825 39 1 3.4002 1.1441 2.2081 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082478124.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:11 Heat of formation + Delta-G solvation = -23.969140 kcal Electronic energy + Delta-G solvation = -16278.580445 eV Core-core repulsion = 13833.690520 eV Total energy + Delta-G solvation = -2444.889925 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.60882 -37.25975 -35.04933 -34.75890 -31.95039 -30.45100 -28.65871 -26.23001 -25.53043 -24.20032 -22.93684 -21.37325 -20.62448 -18.62882 -17.01123 -16.67608 -16.44543 -16.16636 -15.79372 -15.39404 -15.08147 -14.58545 -14.46124 -14.07594 -13.85467 -13.44500 -13.31699 -12.86269 -12.83237 -12.67474 -12.50456 -12.41110 -12.15275 -11.94324 -11.78728 -11.71507 -11.45950 -11.24969 -10.98926 -10.54929 -9.37096 -9.19832 -8.20765 -6.32213 1.40156 1.40560 1.54059 2.39972 2.91009 3.02283 3.12767 3.80890 3.95101 4.04132 4.24085 4.28772 4.34742 4.43252 4.49998 4.54683 4.61388 4.63355 4.68582 4.78475 4.83896 4.93847 4.94900 5.01159 5.06462 5.08664 5.18002 5.33336 5.42149 5.45570 5.63676 5.76113 6.01720 6.02520 6.17249 6.29168 6.32571 6.84643 7.37007 8.91762 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.044049 B = 0.005510 C = 0.005054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.506850 B = 5080.544689 C = 5538.467819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.109 4.109 3 C 0.091 3.909 4 H 0.036 0.964 5 C 0.062 3.938 6 N -0.554 5.554 7 C 0.081 3.919 8 C 0.038 3.962 9 C -0.544 4.544 10 H 0.060 0.940 11 C 0.002 3.998 12 N -0.932 5.932 13 Si 0.968 3.032 14 H -0.262 1.262 15 H -0.277 1.277 16 H -0.277 1.277 17 C 0.058 3.942 18 C 0.067 3.933 19 N -0.550 5.550 20 C 0.024 3.976 21 H 0.051 0.949 22 H 0.053 0.947 23 H 0.071 0.929 24 H 0.079 0.921 25 H 0.067 0.933 26 H 0.032 0.968 27 H 0.082 0.918 28 H 0.018 0.982 29 H 0.064 0.936 30 H -0.009 1.009 31 H -0.005 1.005 32 H 0.264 0.736 33 H 0.063 0.937 34 H 0.031 0.969 35 H 0.031 0.969 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.115 -17.076 6.744 18.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.147 4.147 3 C -0.018 4.018 4 H 0.054 0.946 5 C -0.066 4.066 6 N -0.279 5.279 7 C -0.047 4.047 8 C 0.000 4.000 9 C -0.583 4.583 10 H 0.078 0.922 11 C -0.196 4.196 12 N -0.572 5.572 13 Si 0.792 3.208 14 H -0.186 1.186 15 H -0.203 1.203 16 H -0.203 1.203 17 C -0.070 4.070 18 C -0.062 4.062 19 N -0.275 5.275 20 C -0.124 4.124 21 H 0.070 0.930 22 H 0.073 0.927 23 H 0.090 0.910 24 H 0.098 0.902 25 H 0.086 0.914 26 H 0.050 0.950 27 H 0.100 0.900 28 H 0.036 0.964 29 H 0.082 0.918 30 H 0.009 0.991 31 H 0.013 0.987 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.049 0.951 35 H 0.049 0.951 36 H 0.113 0.887 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 0.174 -16.918 6.798 18.234 hybrid contribution -0.091 1.085 -0.673 1.279 sum 0.084 -15.833 6.125 16.977 Atomic orbital electron populations 1.21802 0.94720 1.02517 1.01879 1.21553 0.96318 0.93684 1.03117 1.21730 0.87216 0.96930 0.95931 0.94642 1.22281 0.99930 0.87413 0.96967 1.62184 1.10855 1.15708 1.39111 1.21955 0.99139 0.94804 0.88757 1.18909 0.94967 0.90745 0.95363 1.21645 1.39406 0.93996 1.03239 0.92223 1.25963 0.95048 0.98643 0.99940 1.70117 1.43997 1.09005 1.34088 0.85364 0.78104 0.78380 0.78972 1.18569 1.20268 1.20291 1.22116 0.87838 0.99766 0.97310 1.22094 1.00324 0.88122 0.95618 1.62195 1.10594 1.15345 1.39390 1.22462 1.01209 0.99531 0.89154 0.93033 0.92748 0.90976 0.90220 0.91404 0.94983 0.89997 0.96365 0.91796 0.99062 0.98703 0.92727 0.91862 0.95058 0.95070 0.88698 0.89638 0.90587 0.95622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.76 71.98 0.70 -1.96 16 2 C -0.11 -2.12 5.23 30.59 0.16 -1.96 16 3 C 0.09 2.38 2.01 44.92 0.09 2.47 16 4 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 5 C 0.06 1.94 4.62 86.31 0.40 2.34 16 6 N -0.55 -21.58 4.71 -895.70 -4.22 -25.80 16 7 C 0.08 3.62 4.90 86.30 0.42 4.04 16 8 C 0.04 2.08 4.90 29.84 0.15 2.22 16 9 C -0.54 -31.81 9.11 25.60 0.23 -31.58 16 10 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 11 C 0.00 0.12 5.46 84.66 0.46 0.58 16 12 N -0.93 -57.74 13.29 21.45 0.28 -57.45 16 13 Si 0.97 44.85 29.54 68.60 2.03 46.88 16 14 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 15 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 16 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 17 C 0.06 2.13 5.41 86.31 0.47 2.60 16 18 C 0.07 1.96 5.61 86.31 0.48 2.44 16 19 N -0.55 -14.31 4.78 -896.55 -4.29 -18.60 16 20 C 0.02 0.46 8.98 127.69 1.15 1.60 16 21 H 0.05 1.00 6.46 -2.39 -0.02 0.98 16 22 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 23 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 24 H 0.08 1.32 6.21 -2.39 -0.01 1.30 16 25 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.08 2.44 6.52 -2.39 -0.02 2.42 16 28 H 0.02 0.81 8.12 -2.38 -0.02 0.79 16 29 H 0.06 2.78 8.03 -2.39 -0.02 2.76 16 30 H -0.01 -0.55 8.14 -2.38 -0.02 -0.57 16 31 H -0.01 -0.31 6.49 -2.39 -0.02 -0.33 16 32 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 33 H 0.06 2.62 6.33 -2.39 -0.02 2.61 16 34 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.09 2.39 8.07 -2.39 -0.02 2.37 16 37 H 0.09 1.36 6.53 -2.39 -0.02 1.34 16 38 H 0.08 1.29 8.02 -2.38 -0.02 1.27 16 39 H 0.03 0.49 8.11 -2.39 -0.02 0.47 16 Total: -1.00 -65.49 299.70 -0.50 -65.99 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: 0.98 Total: 6.19 kcal Atomic # 6 Polarization: -21.92 SS G_CDS: 4.71 Total: -17.21 kcal Atomic # 7 Polarization: -93.63 SS G_CDS: -8.22 Total: -101.85 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -65.49 -0.50 -65.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082478124.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.022 kcal (2) G-P(sol) polarization free energy of solvation -65.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds