Wall clock time and date at job start Mon Mar 30 2020 03:03:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.53000 * 109.46629 * 2 1
4 4 H 1.08999 * 109.49279 * 54.50428 * 3 2 1
5 5 C 1.53055 * 109.48806 * 294.43900 * 3 2 1
6 6 N 1.46960 * 109.36299 * 181.63338 * 5 3 2
7 7 C 1.46901 * 111.00134 * 183.18872 * 6 5 3
8 8 C 1.52994 * 109.47448 * 170.15431 * 7 6 5
9 9 C 1.50696 * 109.47475 * 180.02562 * 8 7 6
10 10 H 1.08005 * 120.00041 * 0.02562 * 9 8 7
11 11 C 1.37879 * 120.00372 * 179.97438 * 9 8 7
12 12 N 1.31508 * 119.99499 * 0.02562 * 11 9 8
13 13 Si 1.86795 * 120.00276 * 180.02562 * 11 9 8
14 14 H 1.48505 * 109.46862 * 359.97438 * 13 11 9
15 15 H 1.48496 * 109.47416 * 120.00281 * 13 11 9
16 16 H 1.48501 * 109.47278 * 240.00459 * 13 11 9
17 17 C 1.46958 * 110.87944 * 59.32164 * 6 5 3
18 18 C 1.53047 * 109.36616 * 300.67513 * 17 6 5
19 19 N 1.46959 * 109.48961 * 174.55170 * 3 2 1
20 20 C 1.46901 * 110.99582 * 303.15583 * 19 3 2
21 21 H 1.08999 * 109.47650 * 56.47309 * 1 2 3
22 22 H 1.08999 * 109.47092 * 296.46204 * 1 2 3
23 23 H 1.09005 * 109.47061 * 176.46840 * 1 2 3
24 24 H 1.08997 * 109.47479 * 120.00139 * 2 1 3
25 25 H 1.09001 * 109.47117 * 240.00328 * 2 1 3
26 26 H 1.08995 * 109.48980 * 301.59989 * 5 3 2
27 27 H 1.09000 * 109.49014 * 61.66634 * 5 3 2
28 28 H 1.09004 * 109.46992 * 290.15700 * 7 6 5
29 29 H 1.09004 * 109.46844 * 50.15543 * 7 6 5
30 30 H 1.09004 * 109.47243 * 300.00115 * 8 7 6
31 31 H 1.08999 * 109.47295 * 59.99810 * 8 7 6
32 32 H 0.97004 * 120.00115 * 179.97438 * 12 11 9
33 33 H 1.09000 * 109.48597 * 180.70913 * 17 6 5
34 34 H 1.09004 * 109.50609 * 60.65855 * 17 6 5
35 35 H 1.08995 * 109.49094 * 298.43801 * 18 17 6
36 36 H 1.08997 * 109.48738 * 178.36374 * 18 17 6
37 37 H 1.08996 * 109.47327 * 66.76664 * 20 19 3
38 38 H 1.09006 * 109.46743 * 186.76380 * 20 19 3
39 39 H 1.08993 * 109.47135 * 306.76051 * 20 19 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 1 1.5986 1.9843 0.8366
5 6 1.6472 2.1229 -1.3136
6 7 2.1719 3.4956 -1.3272
7 6 1.7512 4.2080 -2.5411
8 6 2.1021 5.6913 -2.4094
9 6 1.6700 6.4223 -3.6543
10 1 1.1924 5.8828 -4.4590
11 6 1.8834 7.7799 -3.7659
12 7 2.4645 8.4367 -2.7860
13 14 1.3471 8.6860 -5.3088
14 1 0.7232 7.7262 -6.2549
15 1 0.3625 9.7375 -4.9484
16 1 2.5299 9.3144 -5.9502
17 6 3.6356 3.4982 -1.1956
18 6 4.0282 2.8179 0.1179
19 7 3.5036 1.4452 0.1315
20 6 3.9242 0.7328 1.3454
21 1 -0.3634 0.5676 -0.8566
22 1 -0.3633 0.4579 0.9200
23 1 -0.3633 -1.0258 -0.0633
24 1 1.8934 -0.5138 0.8899
25 1 1.8933 -0.5138 -0.8900
26 1 2.0659 1.5653 -2.1513
27 1 0.5609 2.1479 -1.3996
28 1 2.2658 3.7882 -3.4055
29 1 0.6744 4.0995 -2.6712
30 1 1.5876 6.1111 -1.5450
31 1 3.1789 5.7998 -2.2792
32 1 2.6150 9.3918 -2.8645
33 1 3.9988 4.5259 -1.1957
34 1 4.0771 2.9564 -2.0320
35 1 3.6095 3.3755 0.9556
36 1 5.1145 2.7928 0.2039
37 1 3.6858 -0.3261 1.2463
38 1 4.9991 0.8520 1.4825
39 1 3.4002 1.1441 2.2081
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000082478124.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:03:11
Heat of formation + Delta-G solvation = -23.969140 kcal
Electronic energy + Delta-G solvation = -16278.580445 eV
Core-core repulsion = 13833.690520 eV
Total energy + Delta-G solvation = -2444.889925 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-40.60882 -37.25975 -35.04933 -34.75890 -31.95039 -30.45100 -28.65871 -26.23001
-25.53043 -24.20032 -22.93684 -21.37325 -20.62448 -18.62882 -17.01123 -16.67608
-16.44543 -16.16636 -15.79372 -15.39404 -15.08147 -14.58545 -14.46124 -14.07594
-13.85467 -13.44500 -13.31699 -12.86269 -12.83237 -12.67474 -12.50456 -12.41110
-12.15275 -11.94324 -11.78728 -11.71507 -11.45950 -11.24969 -10.98926 -10.54929
-9.37096 -9.19832 -8.20765 -6.32213 1.40156 1.40560 1.54059 2.39972
2.91009 3.02283 3.12767 3.80890 3.95101 4.04132 4.24085 4.28772
4.34742 4.43252 4.49998 4.54683 4.61388 4.63355 4.68582 4.78475
4.83896 4.93847 4.94900 5.01159 5.06462 5.08664 5.18002 5.33336
5.42149 5.45570 5.63676 5.76113 6.01720 6.02520 6.17249 6.29168
6.32571 6.84643 7.37007 8.91762
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.044049 B = 0.005510 C = 0.005054
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 635.506850 B = 5080.544689 C = 5538.467819
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C -0.109 4.109
3 C 0.091 3.909
4 H 0.036 0.964
5 C 0.062 3.938
6 N -0.554 5.554
7 C 0.081 3.919
8 C 0.038 3.962
9 C -0.544 4.544
10 H 0.060 0.940
11 C 0.002 3.998
12 N -0.932 5.932
13 Si 0.968 3.032
14 H -0.262 1.262
15 H -0.277 1.277
16 H -0.277 1.277
17 C 0.058 3.942
18 C 0.067 3.933
19 N -0.550 5.550
20 C 0.024 3.976
21 H 0.051 0.949
22 H 0.053 0.947
23 H 0.071 0.929
24 H 0.079 0.921
25 H 0.067 0.933
26 H 0.032 0.968
27 H 0.082 0.918
28 H 0.018 0.982
29 H 0.064 0.936
30 H -0.009 1.009
31 H -0.005 1.005
32 H 0.264 0.736
33 H 0.063 0.937
34 H 0.031 0.969
35 H 0.031 0.969
36 H 0.095 0.905
37 H 0.085 0.915
38 H 0.075 0.925
39 H 0.025 0.975
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.115 -17.076 6.744 18.359
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.147 4.147
3 C -0.018 4.018
4 H 0.054 0.946
5 C -0.066 4.066
6 N -0.279 5.279
7 C -0.047 4.047
8 C 0.000 4.000
9 C -0.583 4.583
10 H 0.078 0.922
11 C -0.196 4.196
12 N -0.572 5.572
13 Si 0.792 3.208
14 H -0.186 1.186
15 H -0.203 1.203
16 H -0.203 1.203
17 C -0.070 4.070
18 C -0.062 4.062
19 N -0.275 5.275
20 C -0.124 4.124
21 H 0.070 0.930
22 H 0.073 0.927
23 H 0.090 0.910
24 H 0.098 0.902
25 H 0.086 0.914
26 H 0.050 0.950
27 H 0.100 0.900
28 H 0.036 0.964
29 H 0.082 0.918
30 H 0.009 0.991
31 H 0.013 0.987
32 H 0.073 0.927
33 H 0.081 0.919
34 H 0.049 0.951
35 H 0.049 0.951
36 H 0.113 0.887
37 H 0.104 0.896
38 H 0.094 0.906
39 H 0.044 0.956
Dipole moment (debyes) X Y Z Total
from point charges 0.174 -16.918 6.798 18.234
hybrid contribution -0.091 1.085 -0.673 1.279
sum 0.084 -15.833 6.125 16.977
Atomic orbital electron populations
1.21802 0.94720 1.02517 1.01879 1.21553 0.96318 0.93684 1.03117
1.21730 0.87216 0.96930 0.95931 0.94642 1.22281 0.99930 0.87413
0.96967 1.62184 1.10855 1.15708 1.39111 1.21955 0.99139 0.94804
0.88757 1.18909 0.94967 0.90745 0.95363 1.21645 1.39406 0.93996
1.03239 0.92223 1.25963 0.95048 0.98643 0.99940 1.70117 1.43997
1.09005 1.34088 0.85364 0.78104 0.78380 0.78972 1.18569 1.20268
1.20291 1.22116 0.87838 0.99766 0.97310 1.22094 1.00324 0.88122
0.95618 1.62195 1.10594 1.15345 1.39390 1.22462 1.01209 0.99531
0.89154 0.93033 0.92748 0.90976 0.90220 0.91404 0.94983 0.89997
0.96365 0.91796 0.99062 0.98703 0.92727 0.91862 0.95058 0.95070
0.88698 0.89638 0.90587 0.95622
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.67 9.76 71.98 0.70 -1.96 16
2 C -0.11 -2.12 5.23 30.59 0.16 -1.96 16
3 C 0.09 2.38 2.01 44.92 0.09 2.47 16
4 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16
5 C 0.06 1.94 4.62 86.31 0.40 2.34 16
6 N -0.55 -21.58 4.71 -895.70 -4.22 -25.80 16
7 C 0.08 3.62 4.90 86.30 0.42 4.04 16
8 C 0.04 2.08 4.90 29.84 0.15 2.22 16
9 C -0.54 -31.81 9.11 25.60 0.23 -31.58 16
10 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16
11 C 0.00 0.12 5.46 84.66 0.46 0.58 16
12 N -0.93 -57.74 13.29 21.45 0.28 -57.45 16
13 Si 0.97 44.85 29.54 68.60 2.03 46.88 16
14 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16
15 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16
16 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16
17 C 0.06 2.13 5.41 86.31 0.47 2.60 16
18 C 0.07 1.96 5.61 86.31 0.48 2.44 16
19 N -0.55 -14.31 4.78 -896.55 -4.29 -18.60 16
20 C 0.02 0.46 8.98 127.69 1.15 1.60 16
21 H 0.05 1.00 6.46 -2.39 -0.02 0.98 16
22 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16
23 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16
24 H 0.08 1.32 6.21 -2.39 -0.01 1.30 16
25 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16
26 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16
27 H 0.08 2.44 6.52 -2.39 -0.02 2.42 16
28 H 0.02 0.81 8.12 -2.38 -0.02 0.79 16
29 H 0.06 2.78 8.03 -2.39 -0.02 2.76 16
30 H -0.01 -0.55 8.14 -2.38 -0.02 -0.57 16
31 H -0.01 -0.31 6.49 -2.39 -0.02 -0.33 16
32 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16
33 H 0.06 2.62 6.33 -2.39 -0.02 2.61 16
34 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16
35 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16
36 H 0.09 2.39 8.07 -2.39 -0.02 2.37 16
37 H 0.09 1.36 6.53 -2.39 -0.02 1.34 16
38 H 0.08 1.29 8.02 -2.38 -0.02 1.27 16
39 H 0.03 0.49 8.11 -2.39 -0.02 0.47 16
Total: -1.00 -65.49 299.70 -0.50 -65.99
By element:
Atomic # 1 Polarization: 5.20 SS G_CDS: 0.98 Total: 6.19 kcal
Atomic # 6 Polarization: -21.92 SS G_CDS: 4.71 Total: -17.21 kcal
Atomic # 7 Polarization: -93.63 SS G_CDS: -8.22 Total: -101.85 kcal
Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal
Total: -65.49 -0.50 -65.99 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000082478124.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 42.022 kcal
(2) G-P(sol) polarization free energy of solvation -65.491 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.469 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.500 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.991 kcal
(6) G-S(sol) free energy of system = (1) + (5) -23.969 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds