Wall clock time and date at job start Mon Mar 30 2020 03:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47281 * 2 1 4 4 H 1.09008 * 109.47060 * 177.66118 * 3 2 1 5 5 C 1.50692 * 109.47123 * 297.66189 * 3 2 1 6 6 H 1.08001 * 119.99861 * 120.00420 * 5 3 2 7 7 C 1.37870 * 120.00351 * 299.99889 * 5 3 2 8 8 N 1.31520 * 120.00058 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00180 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47303 * 60.00373 * 9 7 5 11 11 H 1.48503 * 109.47305 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47313 * 299.99906 * 9 7 5 13 13 N 1.46902 * 109.46974 * 57.66488 * 3 2 1 14 14 C 1.46904 * 110.99718 * 183.37741 * 13 3 2 15 15 C 1.46895 * 110.99839 * 59.42440 * 13 3 2 16 16 H 1.08993 * 109.50696 * 308.12252 * 15 13 3 17 17 C 1.53123 * 109.50143 * 188.00636 * 15 13 3 18 18 C 1.53123 * 109.16189 * 182.40468 * 17 15 13 19 19 C 1.53042 * 109.27790 * 57.65528 * 18 17 15 20 20 N 1.46854 * 109.51941 * 300.82118 * 19 18 17 21 21 C 1.46837 * 111.19851 * 61.74395 * 20 19 18 22 22 H 1.09001 * 109.46808 * 295.63005 * 1 2 3 23 23 H 1.09000 * 109.47139 * 55.62609 * 1 2 3 24 24 H 1.09000 * 109.47236 * 175.62852 * 1 2 3 25 25 H 1.08998 * 109.47140 * 120.00268 * 2 1 3 26 26 H 1.08999 * 109.46869 * 240.00168 * 2 1 3 27 27 H 0.96999 * 119.99949 * 179.97438 * 8 7 5 28 28 H 1.09000 * 109.46839 * 60.00303 * 14 13 3 29 29 H 1.09000 * 109.46838 * 179.97438 * 14 13 3 30 30 H 1.08997 * 109.47046 * 299.99768 * 14 13 3 31 31 H 1.09002 * 109.52001 * 302.30911 * 17 15 13 32 32 H 1.08997 * 109.52595 * 62.49775 * 17 15 13 33 33 H 1.08991 * 109.50371 * 297.71093 * 18 17 15 34 34 H 1.09003 * 109.53567 * 177.61363 * 18 17 15 35 35 H 1.08994 * 109.46114 * 180.80449 * 19 18 17 36 36 H 1.08995 * 109.46262 * 60.83195 * 19 18 17 37 37 H 1.00895 * 110.99731 * 297.64402 * 20 19 18 38 38 H 1.09001 * 109.46219 * 178.23962 * 21 20 19 39 39 H 1.08995 * 109.46617 * 58.27353 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1293 1.4427 0.0419 5 6 1.5856 2.1359 -1.2584 6 1 0.9617 3.0152 -1.1951 7 6 1.9664 1.6481 -2.4903 8 7 2.7259 0.5771 -2.5674 9 14 1.4025 2.5073 -4.0502 10 1 1.8970 3.9075 -4.0505 11 1 1.9442 1.7914 -5.2332 12 1 -0.0814 2.5063 -4.1071 13 7 1.5048 2.1510 1.1702 14 6 1.9091 3.5633 1.1608 15 6 1.9171 1.4938 2.4176 16 1 1.6719 0.4329 2.3682 17 6 1.1838 2.1342 3.5994 18 6 1.6636 1.4845 4.9004 19 6 3.1802 1.6521 5.0195 20 7 3.8355 1.0223 3.8660 21 6 3.4263 1.6610 2.6087 22 1 -0.3633 0.4445 0.9266 23 1 -0.3633 0.5802 -0.8482 24 1 -0.3634 -1.0247 -0.0783 25 1 1.8933 -0.5139 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 2.9936 0.2337 -3.4342 28 1 1.5308 4.0435 0.2583 29 1 1.4991 4.0645 2.0376 30 1 2.9969 3.6300 1.1792 31 1 1.3981 3.2027 3.6252 32 1 0.1105 1.9796 3.4893 33 1 1.4143 0.4236 4.8907 34 1 1.1767 1.9651 5.7490 35 1 3.5269 1.1781 5.9377 36 1 3.4276 2.7133 5.0429 37 1 3.6531 0.0302 3.8437 38 1 3.9518 1.1935 1.7760 39 1 3.6725 2.7222 2.6435 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082499471.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:12 Heat of formation + Delta-G solvation = -18.206163 kcal Electronic energy + Delta-G solvation = -17152.266553 eV Core-core repulsion = 14707.626529 eV Total energy + Delta-G solvation = -2444.640023 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.66664 -37.71499 -34.84439 -32.96160 -32.42687 -30.48093 -28.11199 -26.86871 -24.83840 -24.37670 -23.01145 -21.38758 -20.10620 -18.12153 -17.16216 -16.92277 -16.19167 -15.88178 -15.62847 -15.34777 -15.03719 -14.34255 -13.96680 -13.72153 -13.57613 -13.45912 -13.03713 -12.81006 -12.78211 -12.60297 -12.24225 -12.22027 -12.15421 -12.04818 -11.64186 -11.51314 -11.29623 -11.01771 -10.73833 -10.44202 -9.69921 -8.51701 -8.06477 -6.16301 1.42443 1.43238 1.50406 2.43637 3.19147 3.27409 3.58122 3.82692 4.05887 4.18199 4.23936 4.39831 4.51006 4.55936 4.66193 4.69343 4.74328 4.78988 4.89776 4.94220 5.04782 5.05954 5.13290 5.18307 5.26019 5.30865 5.42708 5.49162 5.54060 5.74639 5.80585 5.87249 6.05431 6.33767 6.42520 6.48829 6.82927 6.97818 7.51359 8.98425 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.041849 B = 0.007744 C = 0.007630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.904843 B = 3614.815999 C = 3668.679022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.106 4.106 3 C 0.225 3.775 4 H -0.037 1.037 5 C -0.507 4.507 6 H 0.056 0.944 7 C 0.014 3.986 8 N -0.919 5.919 9 Si 0.950 3.050 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.273 1.273 13 N -0.530 5.530 14 C 0.038 3.962 15 C 0.050 3.950 16 H 0.068 0.932 17 C -0.105 4.105 18 C -0.147 4.147 19 C 0.057 3.943 20 N -0.689 5.689 21 C 0.038 3.962 22 H 0.050 0.950 23 H 0.035 0.965 24 H 0.034 0.966 25 H 0.024 0.976 26 H 0.061 0.939 27 H 0.259 0.741 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.007 0.993 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.067 0.933 37 H 0.342 0.658 38 H 0.043 0.957 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.025 1.595 12.897 13.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.144 4.144 3 C 0.118 3.882 4 H -0.019 1.019 5 C -0.545 4.545 6 H 0.074 0.926 7 C -0.185 4.185 8 N -0.559 5.559 9 Si 0.777 3.223 10 H -0.199 1.199 11 H -0.213 1.213 12 H -0.198 1.198 13 N -0.253 5.253 14 C -0.111 4.111 15 C -0.060 4.060 16 H 0.086 0.914 17 C -0.143 4.143 18 C -0.186 4.186 19 C -0.073 4.073 20 N -0.318 5.318 21 C -0.093 4.093 22 H 0.069 0.931 23 H 0.054 0.946 24 H 0.053 0.947 25 H 0.042 0.958 26 H 0.079 0.921 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.026 0.974 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.106 0.894 35 H 0.111 0.889 36 H 0.086 0.914 37 H 0.160 0.840 38 H 0.062 0.938 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.865 1.847 12.786 13.052 hybrid contribution -0.022 -0.052 -1.455 1.456 sum -1.887 1.795 11.331 11.626 Atomic orbital electron populations 1.21310 0.95859 0.98428 1.00862 1.21427 0.96253 0.97740 0.98990 1.19005 0.90346 0.91378 0.87473 1.01937 1.21314 1.30525 1.11756 0.90948 0.92563 1.25602 0.95421 0.95712 1.01726 1.70005 1.37264 1.23643 1.25010 0.85730 0.78672 0.78650 0.79290 1.19919 1.21265 1.19792 1.62222 1.59258 1.02148 1.01676 1.22227 0.96956 0.90284 1.01590 1.22445 0.93821 0.98936 0.90827 0.91427 1.21586 0.99824 0.99777 0.93108 1.22216 0.97746 1.01241 0.97443 1.22114 0.91489 1.00200 0.93459 1.60647 1.60781 1.08074 1.02299 1.22477 0.95481 0.99541 0.91811 0.93092 0.94559 0.94700 0.95751 0.92100 0.93179 0.92610 0.90841 0.97402 0.91899 0.91880 0.91862 0.89435 0.88871 0.91401 0.84004 0.93826 0.91639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.66 9.52 71.98 0.69 -3.97 16 2 C -0.11 -5.07 5.07 30.59 0.16 -4.91 16 3 C 0.22 11.17 1.51 44.17 0.07 11.24 16 4 H -0.04 -2.08 6.59 -2.38 -0.02 -2.09 16 5 C -0.51 -27.40 6.71 25.60 0.17 -27.23 16 6 H 0.06 3.04 6.43 -2.91 -0.02 3.02 16 7 C 0.01 0.76 5.30 84.65 0.45 1.21 16 8 N -0.92 -52.94 11.30 21.45 0.24 -52.70 16 9 Si 0.95 43.84 29.54 68.60 2.03 45.86 16 10 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 11 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 12 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 13 N -0.53 -21.83 3.81 -875.89 -3.34 -25.16 16 14 C 0.04 1.45 8.40 127.69 1.07 2.52 16 15 C 0.05 1.72 2.13 44.97 0.10 1.82 16 16 H 0.07 2.47 5.94 -2.39 -0.01 2.46 16 17 C -0.11 -2.86 5.22 30.68 0.16 -2.70 16 18 C -0.15 -3.07 6.08 30.65 0.19 -2.88 16 19 C 0.06 1.22 6.55 86.33 0.57 1.79 16 20 N -0.69 -19.10 6.87 -514.02 -3.53 -22.62 16 21 C 0.04 1.31 5.12 86.33 0.44 1.75 16 22 H 0.05 2.06 7.69 -2.39 -0.02 2.05 16 23 H 0.04 1.72 7.15 -2.39 -0.02 1.70 16 24 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.02 1.07 6.35 -2.39 -0.02 1.05 16 26 H 0.06 3.32 6.01 -2.39 -0.01 3.31 16 27 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 28 H 0.06 2.32 6.27 -2.39 -0.01 2.31 16 29 H 0.07 2.35 6.18 -2.39 -0.01 2.34 16 30 H 0.01 0.30 6.45 -2.39 -0.02 0.28 16 31 H 0.06 1.69 6.32 -2.39 -0.02 1.67 16 32 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.34 8.92 8.86 -89.70 -0.79 8.13 16 38 H 0.04 1.79 6.68 -2.39 -0.02 1.77 16 39 H 0.07 2.28 6.38 -2.39 -0.02 2.27 16 Total: -1.00 -58.54 284.91 -0.31 -58.86 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: 0.23 Total: 17.13 kcal Atomic # 6 Polarization: -25.41 SS G_CDS: 4.05 Total: -21.36 kcal Atomic # 7 Polarization: -93.86 SS G_CDS: -6.62 Total: -100.48 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -58.54 -0.31 -58.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082499471.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.650 kcal (2) G-P(sol) polarization free energy of solvation -58.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds