Wall clock time and date at job start Mon Mar 30 2020 03:11:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.52998 * 109.47281 * 2 1
4 4 H 1.09008 * 109.47060 * 177.66118 * 3 2 1
5 5 C 1.50692 * 109.47123 * 297.66189 * 3 2 1
6 6 H 1.08001 * 119.99861 * 120.00420 * 5 3 2
7 7 C 1.37870 * 120.00351 * 299.99889 * 5 3 2
8 8 N 1.31520 * 120.00058 * 0.02562 * 7 5 3
9 9 Si 1.86799 * 120.00180 * 179.97438 * 7 5 3
10 10 H 1.48495 * 109.47303 * 60.00373 * 9 7 5
11 11 H 1.48503 * 109.47305 * 179.97438 * 9 7 5
12 12 H 1.48503 * 109.47313 * 299.99906 * 9 7 5
13 13 N 1.46902 * 109.46974 * 57.66488 * 3 2 1
14 14 C 1.46904 * 110.99718 * 183.37741 * 13 3 2
15 15 C 1.46895 * 110.99839 * 59.42440 * 13 3 2
16 16 H 1.08993 * 109.50696 * 308.12252 * 15 13 3
17 17 C 1.53123 * 109.50143 * 188.00636 * 15 13 3
18 18 C 1.53123 * 109.16189 * 182.40468 * 17 15 13
19 19 C 1.53042 * 109.27790 * 57.65528 * 18 17 15
20 20 N 1.46854 * 109.51941 * 300.82118 * 19 18 17
21 21 C 1.46837 * 111.19851 * 61.74395 * 20 19 18
22 22 H 1.09001 * 109.46808 * 295.63005 * 1 2 3
23 23 H 1.09000 * 109.47139 * 55.62609 * 1 2 3
24 24 H 1.09000 * 109.47236 * 175.62852 * 1 2 3
25 25 H 1.08998 * 109.47140 * 120.00268 * 2 1 3
26 26 H 1.08999 * 109.46869 * 240.00168 * 2 1 3
27 27 H 0.96999 * 119.99949 * 179.97438 * 8 7 5
28 28 H 1.09000 * 109.46839 * 60.00303 * 14 13 3
29 29 H 1.09000 * 109.46838 * 179.97438 * 14 13 3
30 30 H 1.08997 * 109.47046 * 299.99768 * 14 13 3
31 31 H 1.09002 * 109.52001 * 302.30911 * 17 15 13
32 32 H 1.08997 * 109.52595 * 62.49775 * 17 15 13
33 33 H 1.08991 * 109.50371 * 297.71093 * 18 17 15
34 34 H 1.09003 * 109.53567 * 177.61363 * 18 17 15
35 35 H 1.08994 * 109.46114 * 180.80449 * 19 18 17
36 36 H 1.08995 * 109.46262 * 60.83195 * 19 18 17
37 37 H 1.00895 * 110.99731 * 297.64402 * 20 19 18
38 38 H 1.09001 * 109.46219 * 178.23962 * 21 20 19
39 39 H 1.08995 * 109.46617 * 58.27353 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 3.1293 1.4427 0.0419
5 6 1.5856 2.1359 -1.2584
6 1 0.9617 3.0152 -1.1951
7 6 1.9664 1.6481 -2.4903
8 7 2.7259 0.5771 -2.5674
9 14 1.4025 2.5073 -4.0502
10 1 1.8970 3.9075 -4.0505
11 1 1.9442 1.7914 -5.2332
12 1 -0.0814 2.5063 -4.1071
13 7 1.5048 2.1510 1.1702
14 6 1.9091 3.5633 1.1608
15 6 1.9171 1.4938 2.4176
16 1 1.6719 0.4329 2.3682
17 6 1.1838 2.1342 3.5994
18 6 1.6636 1.4845 4.9004
19 6 3.1802 1.6521 5.0195
20 7 3.8355 1.0223 3.8660
21 6 3.4263 1.6610 2.6087
22 1 -0.3633 0.4445 0.9266
23 1 -0.3633 0.5802 -0.8482
24 1 -0.3634 -1.0247 -0.0783
25 1 1.8933 -0.5139 0.8899
26 1 1.8933 -0.5138 -0.8900
27 1 2.9936 0.2337 -3.4342
28 1 1.5308 4.0435 0.2583
29 1 1.4991 4.0645 2.0376
30 1 2.9969 3.6300 1.1792
31 1 1.3981 3.2027 3.6252
32 1 0.1105 1.9796 3.4893
33 1 1.4143 0.4236 4.8907
34 1 1.1767 1.9651 5.7490
35 1 3.5269 1.1781 5.9377
36 1 3.4276 2.7133 5.0429
37 1 3.6531 0.0302 3.8437
38 1 3.9518 1.1935 1.7760
39 1 3.6725 2.7222 2.6435
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000082499471.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:11:12
Heat of formation + Delta-G solvation = -18.206163 kcal
Electronic energy + Delta-G solvation = -17152.266553 eV
Core-core repulsion = 14707.626529 eV
Total energy + Delta-G solvation = -2444.640023 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-40.66664 -37.71499 -34.84439 -32.96160 -32.42687 -30.48093 -28.11199 -26.86871
-24.83840 -24.37670 -23.01145 -21.38758 -20.10620 -18.12153 -17.16216 -16.92277
-16.19167 -15.88178 -15.62847 -15.34777 -15.03719 -14.34255 -13.96680 -13.72153
-13.57613 -13.45912 -13.03713 -12.81006 -12.78211 -12.60297 -12.24225 -12.22027
-12.15421 -12.04818 -11.64186 -11.51314 -11.29623 -11.01771 -10.73833 -10.44202
-9.69921 -8.51701 -8.06477 -6.16301 1.42443 1.43238 1.50406 2.43637
3.19147 3.27409 3.58122 3.82692 4.05887 4.18199 4.23936 4.39831
4.51006 4.55936 4.66193 4.69343 4.74328 4.78988 4.89776 4.94220
5.04782 5.05954 5.13290 5.18307 5.26019 5.30865 5.42708 5.49162
5.54060 5.74639 5.80585 5.87249 6.05431 6.33767 6.42520 6.48829
6.82927 6.97818 7.51359 8.98425
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.041849 B = 0.007744 C = 0.007630
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 668.904843 B = 3614.815999 C = 3668.679022
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.107 4.107
2 C -0.106 4.106
3 C 0.225 3.775
4 H -0.037 1.037
5 C -0.507 4.507
6 H 0.056 0.944
7 C 0.014 3.986
8 N -0.919 5.919
9 Si 0.950 3.050
10 H -0.274 1.274
11 H -0.287 1.287
12 H -0.273 1.273
13 N -0.530 5.530
14 C 0.038 3.962
15 C 0.050 3.950
16 H 0.068 0.932
17 C -0.105 4.105
18 C -0.147 4.147
19 C 0.057 3.943
20 N -0.689 5.689
21 C 0.038 3.962
22 H 0.050 0.950
23 H 0.035 0.965
24 H 0.034 0.966
25 H 0.024 0.976
26 H 0.061 0.939
27 H 0.259 0.741
28 H 0.055 0.945
29 H 0.073 0.927
30 H 0.007 0.993
31 H 0.062 0.938
32 H 0.062 0.938
33 H 0.063 0.937
34 H 0.087 0.913
35 H 0.093 0.907
36 H 0.067 0.933
37 H 0.342 0.658
38 H 0.043 0.957
39 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.025 1.595 12.897 13.152
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.165 4.165
2 C -0.144 4.144
3 C 0.118 3.882
4 H -0.019 1.019
5 C -0.545 4.545
6 H 0.074 0.926
7 C -0.185 4.185
8 N -0.559 5.559
9 Si 0.777 3.223
10 H -0.199 1.199
11 H -0.213 1.213
12 H -0.198 1.198
13 N -0.253 5.253
14 C -0.111 4.111
15 C -0.060 4.060
16 H 0.086 0.914
17 C -0.143 4.143
18 C -0.186 4.186
19 C -0.073 4.073
20 N -0.318 5.318
21 C -0.093 4.093
22 H 0.069 0.931
23 H 0.054 0.946
24 H 0.053 0.947
25 H 0.042 0.958
26 H 0.079 0.921
27 H 0.068 0.932
28 H 0.074 0.926
29 H 0.092 0.908
30 H 0.026 0.974
31 H 0.081 0.919
32 H 0.081 0.919
33 H 0.081 0.919
34 H 0.106 0.894
35 H 0.111 0.889
36 H 0.086 0.914
37 H 0.160 0.840
38 H 0.062 0.938
39 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges -1.865 1.847 12.786 13.052
hybrid contribution -0.022 -0.052 -1.455 1.456
sum -1.887 1.795 11.331 11.626
Atomic orbital electron populations
1.21310 0.95859 0.98428 1.00862 1.21427 0.96253 0.97740 0.98990
1.19005 0.90346 0.91378 0.87473 1.01937 1.21314 1.30525 1.11756
0.90948 0.92563 1.25602 0.95421 0.95712 1.01726 1.70005 1.37264
1.23643 1.25010 0.85730 0.78672 0.78650 0.79290 1.19919 1.21265
1.19792 1.62222 1.59258 1.02148 1.01676 1.22227 0.96956 0.90284
1.01590 1.22445 0.93821 0.98936 0.90827 0.91427 1.21586 0.99824
0.99777 0.93108 1.22216 0.97746 1.01241 0.97443 1.22114 0.91489
1.00200 0.93459 1.60647 1.60781 1.08074 1.02299 1.22477 0.95481
0.99541 0.91811 0.93092 0.94559 0.94700 0.95751 0.92100 0.93179
0.92610 0.90841 0.97402 0.91899 0.91880 0.91862 0.89435 0.88871
0.91401 0.84004 0.93826 0.91639
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -4.66 9.52 71.98 0.69 -3.97 16
2 C -0.11 -5.07 5.07 30.59 0.16 -4.91 16
3 C 0.22 11.17 1.51 44.17 0.07 11.24 16
4 H -0.04 -2.08 6.59 -2.38 -0.02 -2.09 16
5 C -0.51 -27.40 6.71 25.60 0.17 -27.23 16
6 H 0.06 3.04 6.43 -2.91 -0.02 3.02 16
7 C 0.01 0.76 5.30 84.65 0.45 1.21 16
8 N -0.92 -52.94 11.30 21.45 0.24 -52.70 16
9 Si 0.95 43.84 29.54 68.60 2.03 45.86 16
10 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16
11 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16
12 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16
13 N -0.53 -21.83 3.81 -875.89 -3.34 -25.16 16
14 C 0.04 1.45 8.40 127.69 1.07 2.52 16
15 C 0.05 1.72 2.13 44.97 0.10 1.82 16
16 H 0.07 2.47 5.94 -2.39 -0.01 2.46 16
17 C -0.11 -2.86 5.22 30.68 0.16 -2.70 16
18 C -0.15 -3.07 6.08 30.65 0.19 -2.88 16
19 C 0.06 1.22 6.55 86.33 0.57 1.79 16
20 N -0.69 -19.10 6.87 -514.02 -3.53 -22.62 16
21 C 0.04 1.31 5.12 86.33 0.44 1.75 16
22 H 0.05 2.06 7.69 -2.39 -0.02 2.05 16
23 H 0.04 1.72 7.15 -2.39 -0.02 1.70 16
24 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16
25 H 0.02 1.07 6.35 -2.39 -0.02 1.05 16
26 H 0.06 3.32 6.01 -2.39 -0.01 3.31 16
27 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16
28 H 0.06 2.32 6.27 -2.39 -0.01 2.31 16
29 H 0.07 2.35 6.18 -2.39 -0.01 2.34 16
30 H 0.01 0.30 6.45 -2.39 -0.02 0.28 16
31 H 0.06 1.69 6.32 -2.39 -0.02 1.67 16
32 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16
33 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16
34 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16
35 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16
36 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16
37 H 0.34 8.92 8.86 -89.70 -0.79 8.13 16
38 H 0.04 1.79 6.68 -2.39 -0.02 1.77 16
39 H 0.07 2.28 6.38 -2.39 -0.02 2.27 16
Total: -1.00 -58.54 284.91 -0.31 -58.86
By element:
Atomic # 1 Polarization: 16.89 SS G_CDS: 0.23 Total: 17.13 kcal
Atomic # 6 Polarization: -25.41 SS G_CDS: 4.05 Total: -21.36 kcal
Atomic # 7 Polarization: -93.86 SS G_CDS: -6.62 Total: -100.48 kcal
Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal
Total: -58.54 -0.31 -58.86 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000082499471.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 40.650 kcal
(2) G-P(sol) polarization free energy of solvation -58.544 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.894 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.312 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.856 kcal
(6) G-S(sol) free energy of system = (1) + (5) -18.206 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds