Wall clock time and date at job start Mon Mar 30 2020 03:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47132 * 2 1 4 4 H 1.09002 * 109.46856 * 181.91283 * 3 2 1 5 5 C 1.50698 * 109.47063 * 61.91812 * 3 2 1 6 6 H 1.07997 * 120.00640 * 239.99796 * 5 3 2 7 7 C 1.37883 * 119.99974 * 60.00348 * 5 3 2 8 8 N 1.31507 * 120.00135 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99941 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47312 * 59.99595 * 9 7 5 11 11 H 1.48500 * 109.47008 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46838 * 299.99595 * 9 7 5 13 13 N 1.46893 * 109.47070 * 301.91809 * 3 2 1 14 14 C 1.46955 * 111.00187 * 300.72216 * 13 3 2 15 15 C 1.53048 * 109.36470 * 176.81313 * 14 13 3 16 16 H 1.09005 * 109.48919 * 298.43172 * 15 14 13 17 17 C 1.53000 * 109.48937 * 178.37360 * 15 14 13 18 18 N 1.46950 * 109.36656 * 58.40268 * 15 14 13 19 19 C 1.46959 * 110.88161 * 300.67949 * 18 15 14 20 20 C 1.46960 * 111.00002 * 176.92408 * 13 3 2 21 21 H 1.08996 * 109.50462 * 303.16684 * 20 13 3 22 22 C 1.53002 * 109.48647 * 63.22186 * 20 13 3 23 23 H 1.08994 * 109.47061 * 184.62785 * 1 2 3 24 24 H 1.09005 * 109.46911 * 304.62911 * 1 2 3 25 25 H 1.08995 * 109.47068 * 64.62744 * 1 2 3 26 26 H 1.08999 * 109.47361 * 239.99789 * 2 1 3 27 27 H 1.09002 * 109.47269 * 119.99978 * 2 1 3 28 28 H 0.97004 * 120.00495 * 180.02562 * 8 7 5 29 29 H 1.09000 * 109.48643 * 56.84872 * 14 13 3 30 30 H 1.08997 * 109.48867 * 296.77972 * 14 13 3 31 31 H 1.09006 * 109.47122 * 300.10514 * 17 15 14 32 32 H 1.09002 * 109.47807 * 60.10399 * 17 15 14 33 33 H 1.09003 * 109.47495 * 180.11316 * 17 15 14 34 34 H 1.00900 * 111.00504 * 176.81327 * 18 15 14 35 35 H 1.09005 * 109.48557 * 299.35132 * 19 18 15 36 36 H 1.08996 * 109.50641 * 179.29966 * 19 18 15 37 37 H 1.09006 * 109.46678 * 179.89277 * 22 20 13 38 38 H 1.08998 * 109.47067 * 59.89510 * 22 20 13 39 39 H 1.08998 * 109.46852 * 299.88554 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1295 1.4427 -0.0343 5 6 1.5769 2.1391 1.2535 6 1 0.9534 3.0181 1.1840 7 6 1.9493 1.6541 2.4894 8 7 2.7083 0.5835 2.5742 9 14 1.3746 2.5171 4.0433 10 1 -0.1097 2.5163 4.0899 11 1 1.9072 1.8034 5.2316 12 1 1.8691 3.9174 4.0435 13 7 1.5129 2.1482 -1.1755 14 6 1.9310 1.4857 -2.4189 15 6 1.2978 2.2027 -3.6136 16 1 0.2119 2.1394 -3.5420 17 6 1.7635 1.5403 -4.9118 18 7 1.7080 3.6137 -3.6085 19 6 1.2900 4.2763 -2.3652 20 6 1.9232 3.5594 -1.1705 21 1 1.5916 4.0314 -0.2457 22 6 3.4473 3.6482 -1.2711 23 1 -0.3633 -1.0243 0.0829 24 1 -0.3633 0.5840 0.8457 25 1 -0.3633 0.4403 -0.9285 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 2.9700 0.2421 3.4436 29 1 1.6048 0.4458 -2.4042 30 1 3.0168 1.5255 -2.5047 31 1 2.8494 1.6030 -4.9825 32 1 1.4591 0.4937 -4.9153 33 1 1.3139 2.0524 -5.7626 34 1 1.3459 4.0986 -4.4160 35 1 0.2040 4.2366 -2.2794 36 1 1.6158 5.3163 -2.3797 37 1 3.7511 4.6950 -1.2692 38 1 3.7785 3.1753 -2.1956 39 1 3.8979 3.1376 -0.4200 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083118949.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:42 Heat of formation + Delta-G solvation = 2.921263 kcal Electronic energy + Delta-G solvation = -17312.834160 eV Core-core repulsion = 14869.110291 eV Total energy + Delta-G solvation = -2443.723869 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.08695 -35.41007 -32.98567 -32.04535 -30.55168 -28.14736 -26.88963 -25.08456 -24.05503 -23.13106 -20.95638 -19.29557 -17.95002 -16.37403 -15.84845 -14.80977 -14.48196 -14.42021 -13.91311 -13.60834 -13.37414 -12.72528 -12.41594 -12.18266 -11.91104 -11.59982 -11.51178 -11.24495 -11.03311 -10.88398 -10.77969 -10.51005 -10.41832 -10.32671 -9.96729 -9.63865 -9.54514 -9.30227 -8.70667 -8.36103 -8.07284 -7.00094 -5.96745 -3.99984 3.33318 3.38066 3.40668 4.43236 4.52439 4.98411 5.29849 5.34329 5.49679 5.61135 5.75877 5.87473 5.96057 6.03490 6.11799 6.19639 6.30962 6.34469 6.42518 6.50980 6.59593 6.63165 6.70841 6.80771 6.89970 7.09834 7.16513 7.33373 7.46384 7.50748 7.68976 7.73049 7.81724 7.87662 8.27746 8.40856 8.68179 9.05229 9.63646 11.09537 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.034123 B = 0.009333 C = 0.008238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.373222 B = 2999.478204 C = 3398.130160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.112 4.112 3 C 0.217 3.783 4 H 0.002 0.998 5 C -0.494 4.494 6 H 0.060 0.940 7 C 0.060 3.940 8 N -0.892 5.892 9 Si 0.891 3.109 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.279 1.279 13 N -0.525 5.525 14 C 0.057 3.943 15 C 0.086 3.914 16 H 0.039 0.961 17 C -0.142 4.142 18 N -0.684 5.684 19 C 0.065 3.935 20 C 0.090 3.910 21 H 0.092 0.908 22 C -0.169 4.169 23 H 0.014 0.986 24 H 0.058 0.942 25 H 0.038 0.962 26 H 0.012 0.988 27 H 0.092 0.908 28 H 0.260 0.740 29 H 0.072 0.928 30 H 0.032 0.968 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.048 0.952 34 H 0.330 0.670 35 H 0.031 0.969 36 H 0.067 0.933 37 H 0.040 0.960 38 H 0.056 0.944 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.951 3.187 -10.137 10.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.151 4.151 3 C 0.111 3.889 4 H 0.020 0.980 5 C -0.533 4.533 6 H 0.078 0.922 7 C -0.141 4.141 8 N -0.532 5.532 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.250 5.250 14 C -0.072 4.072 15 C -0.024 4.024 16 H 0.057 0.943 17 C -0.200 4.200 18 N -0.315 5.315 19 C -0.065 4.065 20 C -0.019 4.019 21 H 0.110 0.890 22 C -0.227 4.227 23 H 0.033 0.967 24 H 0.077 0.923 25 H 0.057 0.943 26 H 0.031 0.969 27 H 0.110 0.890 28 H 0.070 0.930 29 H 0.090 0.910 30 H 0.050 0.950 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.146 0.854 35 H 0.049 0.951 36 H 0.085 0.915 37 H 0.059 0.941 38 H 0.075 0.925 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.746 2.900 -9.715 10.288 hybrid contribution -0.348 0.528 0.719 0.957 sum -2.094 3.428 -8.996 9.852 Atomic orbital electron populations 1.21456 0.97424 0.97490 1.01326 1.21584 0.95031 0.98441 1.00003 1.19253 0.92837 0.90527 0.86292 0.98006 1.21018 1.30817 1.11740 0.89732 0.92222 1.24886 0.95269 0.95087 0.98832 1.69862 1.36435 1.22555 1.24324 0.86671 0.79035 0.79608 0.82746 1.20339 1.21453 1.20426 1.62445 1.59372 1.01073 1.02083 1.22144 0.97476 0.97770 0.89802 1.21536 0.97338 0.88384 0.95184 0.94272 1.21774 1.01925 1.00044 0.96271 1.60559 1.64088 1.02597 1.04257 1.22060 0.97409 0.97020 0.89995 1.21587 0.92897 0.90648 0.96807 0.89029 1.22226 0.98192 1.00497 1.01834 0.96680 0.92269 0.94300 0.96927 0.89025 0.93026 0.91001 0.94997 0.92141 0.92326 0.93253 0.85375 0.95099 0.91482 0.94091 0.92509 0.92178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.65 9.52 37.16 0.35 -2.30 16 2 C -0.11 -2.69 5.06 -26.73 -0.14 -2.82 16 3 C 0.22 5.32 1.35 -68.87 -0.09 5.23 16 4 H 0.00 0.07 6.55 -51.93 -0.34 -0.27 16 5 C -0.49 -13.09 6.64 -34.44 -0.23 -13.32 16 6 H 0.06 1.59 6.47 -52.49 -0.34 1.25 16 7 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 8 N -0.89 -25.11 11.30 55.43 0.63 -24.48 16 9 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 N -0.53 -11.09 3.76 -219.95 -0.83 -11.92 16 14 C 0.06 1.06 4.20 -3.77 -0.02 1.05 16 15 C 0.09 1.32 3.19 -67.66 -0.22 1.11 16 16 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 17 C -0.14 -1.78 9.46 37.16 0.35 -1.43 16 18 N -0.68 -10.15 5.86 -106.59 -0.62 -10.78 16 19 C 0.06 1.04 6.15 -3.77 -0.02 1.02 16 20 C 0.09 1.76 2.69 -67.65 -0.18 1.58 16 21 H 0.09 1.97 6.18 -51.93 -0.32 1.65 16 22 C -0.17 -3.25 8.36 37.16 0.31 -2.94 16 23 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 24 H 0.06 1.42 7.13 -51.93 -0.37 1.05 16 25 H 0.04 0.82 7.71 -51.93 -0.40 0.42 16 26 H 0.01 0.27 6.43 -51.93 -0.33 -0.06 16 27 H 0.09 2.45 6.02 -51.93 -0.31 2.14 16 28 H 0.26 7.05 8.31 -40.82 -0.34 6.72 16 29 H 0.07 1.36 6.17 -51.93 -0.32 1.04 16 30 H 0.03 0.63 6.34 -51.93 -0.33 0.30 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.33 4.10 8.83 -39.29 -0.35 3.75 16 35 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.06 1.08 5.94 -51.93 -0.31 0.78 16 39 H 0.06 1.32 6.55 -51.93 -0.34 0.98 16 LS Contribution 287.47 15.07 4.33 4.33 Total: -1.00 -27.22 287.47 -8.07 -35.29 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -6.58 Total: 2.67 kcal Atomic # 6 Polarization: -11.32 SS G_CDS: 0.03 Total: -11.29 kcal Atomic # 7 Polarization: -46.35 SS G_CDS: -0.83 Total: -47.18 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -27.22 -8.07 -35.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083118949.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.211 kcal (2) G-P(sol) polarization free energy of solvation -27.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds