Wall clock time and date at job start Mon Mar 30 2020 03:09:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.53004 * 109.47132 * 2 1
4 4 H 1.09002 * 109.46856 * 181.91283 * 3 2 1
5 5 C 1.50698 * 109.47063 * 61.91812 * 3 2 1
6 6 H 1.07997 * 120.00640 * 239.99796 * 5 3 2
7 7 C 1.37883 * 119.99974 * 60.00348 * 5 3 2
8 8 N 1.31507 * 120.00135 * 359.97438 * 7 5 3
9 9 Si 1.86804 * 119.99941 * 180.02562 * 7 5 3
10 10 H 1.48502 * 109.47312 * 59.99595 * 9 7 5
11 11 H 1.48500 * 109.47008 * 179.97438 * 9 7 5
12 12 H 1.48501 * 109.46838 * 299.99595 * 9 7 5
13 13 N 1.46893 * 109.47070 * 301.91809 * 3 2 1
14 14 C 1.46955 * 111.00187 * 300.72216 * 13 3 2
15 15 C 1.53048 * 109.36470 * 176.81313 * 14 13 3
16 16 H 1.09005 * 109.48919 * 298.43172 * 15 14 13
17 17 C 1.53000 * 109.48937 * 178.37360 * 15 14 13
18 18 N 1.46950 * 109.36656 * 58.40268 * 15 14 13
19 19 C 1.46959 * 110.88161 * 300.67949 * 18 15 14
20 20 C 1.46960 * 111.00002 * 176.92408 * 13 3 2
21 21 H 1.08996 * 109.50462 * 303.16684 * 20 13 3
22 22 C 1.53002 * 109.48647 * 63.22186 * 20 13 3
23 23 H 1.08994 * 109.47061 * 184.62785 * 1 2 3
24 24 H 1.09005 * 109.46911 * 304.62911 * 1 2 3
25 25 H 1.08995 * 109.47068 * 64.62744 * 1 2 3
26 26 H 1.08999 * 109.47361 * 239.99789 * 2 1 3
27 27 H 1.09002 * 109.47269 * 119.99978 * 2 1 3
28 28 H 0.97004 * 120.00495 * 180.02562 * 8 7 5
29 29 H 1.09000 * 109.48643 * 56.84872 * 14 13 3
30 30 H 1.08997 * 109.48867 * 296.77972 * 14 13 3
31 31 H 1.09006 * 109.47122 * 300.10514 * 17 15 14
32 32 H 1.09002 * 109.47807 * 60.10399 * 17 15 14
33 33 H 1.09003 * 109.47495 * 180.11316 * 17 15 14
34 34 H 1.00900 * 111.00504 * 176.81327 * 18 15 14
35 35 H 1.09005 * 109.48557 * 299.35132 * 19 18 15
36 36 H 1.08996 * 109.50641 * 179.29966 * 19 18 15
37 37 H 1.09006 * 109.46678 * 179.89277 * 22 20 13
38 38 H 1.08998 * 109.47067 * 59.89510 * 22 20 13
39 39 H 1.08998 * 109.46852 * 299.88554 * 22 20 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 3.1295 1.4427 -0.0343
5 6 1.5769 2.1391 1.2535
6 1 0.9534 3.0181 1.1840
7 6 1.9493 1.6541 2.4894
8 7 2.7083 0.5835 2.5742
9 14 1.3746 2.5171 4.0433
10 1 -0.1097 2.5163 4.0899
11 1 1.9072 1.8034 5.2316
12 1 1.8691 3.9174 4.0435
13 7 1.5129 2.1482 -1.1755
14 6 1.9310 1.4857 -2.4189
15 6 1.2978 2.2027 -3.6136
16 1 0.2119 2.1394 -3.5420
17 6 1.7635 1.5403 -4.9118
18 7 1.7080 3.6137 -3.6085
19 6 1.2900 4.2763 -2.3652
20 6 1.9232 3.5594 -1.1705
21 1 1.5916 4.0314 -0.2457
22 6 3.4473 3.6482 -1.2711
23 1 -0.3633 -1.0243 0.0829
24 1 -0.3633 0.5840 0.8457
25 1 -0.3633 0.4403 -0.9285
26 1 1.8934 -0.5139 -0.8899
27 1 1.8934 -0.5138 0.8900
28 1 2.9700 0.2421 3.4436
29 1 1.6048 0.4458 -2.4042
30 1 3.0168 1.5255 -2.5047
31 1 2.8494 1.6030 -4.9825
32 1 1.4591 0.4937 -4.9153
33 1 1.3139 2.0524 -5.7626
34 1 1.3459 4.0986 -4.4160
35 1 0.2040 4.2366 -2.2794
36 1 1.6158 5.3163 -2.3797
37 1 3.7511 4.6950 -1.2692
38 1 3.7785 3.1753 -2.1956
39 1 3.8979 3.1376 -0.4200
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000083118949.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:09:42
Heat of formation + Delta-G solvation = 2.921263 kcal
Electronic energy + Delta-G solvation = -17312.834160 eV
Core-core repulsion = 14869.110291 eV
Total energy + Delta-G solvation = -2443.723869 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-39.08695 -35.41007 -32.98567 -32.04535 -30.55168 -28.14736 -26.88963 -25.08456
-24.05503 -23.13106 -20.95638 -19.29557 -17.95002 -16.37403 -15.84845 -14.80977
-14.48196 -14.42021 -13.91311 -13.60834 -13.37414 -12.72528 -12.41594 -12.18266
-11.91104 -11.59982 -11.51178 -11.24495 -11.03311 -10.88398 -10.77969 -10.51005
-10.41832 -10.32671 -9.96729 -9.63865 -9.54514 -9.30227 -8.70667 -8.36103
-8.07284 -7.00094 -5.96745 -3.99984 3.33318 3.38066 3.40668 4.43236
4.52439 4.98411 5.29849 5.34329 5.49679 5.61135 5.75877 5.87473
5.96057 6.03490 6.11799 6.19639 6.30962 6.34469 6.42518 6.50980
6.59593 6.63165 6.70841 6.80771 6.89970 7.09834 7.16513 7.33373
7.46384 7.50748 7.68976 7.73049 7.81724 7.87662 8.27746 8.40856
8.68179 9.05229 9.63646 11.09537
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.034123 B = 0.009333 C = 0.008238
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 820.373222 B = 2999.478204 C = 3398.130160
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.120 4.120
2 C -0.112 4.112
3 C 0.217 3.783
4 H 0.002 0.998
5 C -0.494 4.494
6 H 0.060 0.940
7 C 0.060 3.940
8 N -0.892 5.892
9 Si 0.891 3.109
10 H -0.278 1.278
11 H -0.289 1.289
12 H -0.279 1.279
13 N -0.525 5.525
14 C 0.057 3.943
15 C 0.086 3.914
16 H 0.039 0.961
17 C -0.142 4.142
18 N -0.684 5.684
19 C 0.065 3.935
20 C 0.090 3.910
21 H 0.092 0.908
22 C -0.169 4.169
23 H 0.014 0.986
24 H 0.058 0.942
25 H 0.038 0.962
26 H 0.012 0.988
27 H 0.092 0.908
28 H 0.260 0.740
29 H 0.072 0.928
30 H 0.032 0.968
31 H 0.059 0.941
32 H 0.058 0.942
33 H 0.048 0.952
34 H 0.330 0.670
35 H 0.031 0.969
36 H 0.067 0.933
37 H 0.040 0.960
38 H 0.056 0.944
39 H 0.059 0.941
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.951 3.187 -10.137 10.804
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.177 4.177
2 C -0.151 4.151
3 C 0.111 3.889
4 H 0.020 0.980
5 C -0.533 4.533
6 H 0.078 0.922
7 C -0.141 4.141
8 N -0.532 5.532
9 Si 0.719 3.281
10 H -0.203 1.203
11 H -0.215 1.215
12 H -0.204 1.204
13 N -0.250 5.250
14 C -0.072 4.072
15 C -0.024 4.024
16 H 0.057 0.943
17 C -0.200 4.200
18 N -0.315 5.315
19 C -0.065 4.065
20 C -0.019 4.019
21 H 0.110 0.890
22 C -0.227 4.227
23 H 0.033 0.967
24 H 0.077 0.923
25 H 0.057 0.943
26 H 0.031 0.969
27 H 0.110 0.890
28 H 0.070 0.930
29 H 0.090 0.910
30 H 0.050 0.950
31 H 0.079 0.921
32 H 0.077 0.923
33 H 0.067 0.933
34 H 0.146 0.854
35 H 0.049 0.951
36 H 0.085 0.915
37 H 0.059 0.941
38 H 0.075 0.925
39 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges -1.746 2.900 -9.715 10.288
hybrid contribution -0.348 0.528 0.719 0.957
sum -2.094 3.428 -8.996 9.852
Atomic orbital electron populations
1.21456 0.97424 0.97490 1.01326 1.21584 0.95031 0.98441 1.00003
1.19253 0.92837 0.90527 0.86292 0.98006 1.21018 1.30817 1.11740
0.89732 0.92222 1.24886 0.95269 0.95087 0.98832 1.69862 1.36435
1.22555 1.24324 0.86671 0.79035 0.79608 0.82746 1.20339 1.21453
1.20426 1.62445 1.59372 1.01073 1.02083 1.22144 0.97476 0.97770
0.89802 1.21536 0.97338 0.88384 0.95184 0.94272 1.21774 1.01925
1.00044 0.96271 1.60559 1.64088 1.02597 1.04257 1.22060 0.97409
0.97020 0.89995 1.21587 0.92897 0.90648 0.96807 0.89029 1.22226
0.98192 1.00497 1.01834 0.96680 0.92269 0.94300 0.96927 0.89025
0.93026 0.91001 0.94997 0.92141 0.92326 0.93253 0.85375 0.95099
0.91482 0.94091 0.92509 0.92178
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -2.65 9.52 37.16 0.35 -2.30 16
2 C -0.11 -2.69 5.06 -26.73 -0.14 -2.82 16
3 C 0.22 5.32 1.35 -68.87 -0.09 5.23 16
4 H 0.00 0.07 6.55 -51.93 -0.34 -0.27 16
5 C -0.49 -13.09 6.64 -34.44 -0.23 -13.32 16
6 H 0.06 1.59 6.47 -52.49 -0.34 1.25 16
7 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16
8 N -0.89 -25.11 11.30 55.43 0.63 -24.48 16
9 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16
10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16
11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16
12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16
13 N -0.53 -11.09 3.76 -219.95 -0.83 -11.92 16
14 C 0.06 1.06 4.20 -3.77 -0.02 1.05 16
15 C 0.09 1.32 3.19 -67.66 -0.22 1.11 16
16 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16
17 C -0.14 -1.78 9.46 37.16 0.35 -1.43 16
18 N -0.68 -10.15 5.86 -106.59 -0.62 -10.78 16
19 C 0.06 1.04 6.15 -3.77 -0.02 1.02 16
20 C 0.09 1.76 2.69 -67.65 -0.18 1.58 16
21 H 0.09 1.97 6.18 -51.93 -0.32 1.65 16
22 C -0.17 -3.25 8.36 37.16 0.31 -2.94 16
23 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16
24 H 0.06 1.42 7.13 -51.93 -0.37 1.05 16
25 H 0.04 0.82 7.71 -51.93 -0.40 0.42 16
26 H 0.01 0.27 6.43 -51.93 -0.33 -0.06 16
27 H 0.09 2.45 6.02 -51.93 -0.31 2.14 16
28 H 0.26 7.05 8.31 -40.82 -0.34 6.72 16
29 H 0.07 1.36 6.17 -51.93 -0.32 1.04 16
30 H 0.03 0.63 6.34 -51.93 -0.33 0.30 16
31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16
32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16
33 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16
34 H 0.33 4.10 8.83 -39.29 -0.35 3.75 16
35 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16
36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16
37 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16
38 H 0.06 1.08 5.94 -51.93 -0.31 0.78 16
39 H 0.06 1.32 6.55 -51.93 -0.34 0.98 16
LS Contribution 287.47 15.07 4.33 4.33
Total: -1.00 -27.22 287.47 -8.07 -35.29
By element:
Atomic # 1 Polarization: 9.25 SS G_CDS: -6.58 Total: 2.67 kcal
Atomic # 6 Polarization: -11.32 SS G_CDS: 0.03 Total: -11.29 kcal
Atomic # 7 Polarization: -46.35 SS G_CDS: -0.83 Total: -47.18 kcal
Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal
Total LS contribution 4.33 Total: 4.33 kcal
Total: -27.22 -8.07 -35.29 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000083118949.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 38.211 kcal
(2) G-P(sol) polarization free energy of solvation -27.224 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.987 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.066 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.289 kcal
(6) G-S(sol) free energy of system = (1) + (5) 2.921 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds