Wall clock time and date at job start Mon Mar 30 2020 03:09:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.53004 * 109.47132 * 2 1
4 4 H 1.09002 * 109.46856 * 181.91283 * 3 2 1
5 5 C 1.50698 * 109.47063 * 61.91812 * 3 2 1
6 6 H 1.07997 * 120.00640 * 239.99796 * 5 3 2
7 7 C 1.37883 * 119.99974 * 60.00348 * 5 3 2
8 8 N 1.31507 * 120.00135 * 359.97438 * 7 5 3
9 9 Si 1.86804 * 119.99941 * 180.02562 * 7 5 3
10 10 H 1.48502 * 109.47312 * 59.99595 * 9 7 5
11 11 H 1.48500 * 109.47008 * 179.97438 * 9 7 5
12 12 H 1.48501 * 109.46838 * 299.99595 * 9 7 5
13 13 N 1.46893 * 109.47070 * 301.91809 * 3 2 1
14 14 C 1.46955 * 111.00187 * 300.72216 * 13 3 2
15 15 C 1.53048 * 109.36470 * 176.81313 * 14 13 3
16 16 H 1.09005 * 109.48919 * 298.43172 * 15 14 13
17 17 C 1.53000 * 109.48937 * 178.37360 * 15 14 13
18 18 N 1.46950 * 109.36656 * 58.40268 * 15 14 13
19 19 C 1.46959 * 110.88161 * 300.67949 * 18 15 14
20 20 C 1.46960 * 111.00002 * 176.92408 * 13 3 2
21 21 H 1.08996 * 109.50462 * 303.16684 * 20 13 3
22 22 C 1.53002 * 109.48647 * 63.22186 * 20 13 3
23 23 H 1.08994 * 109.47061 * 184.62785 * 1 2 3
24 24 H 1.09005 * 109.46911 * 304.62911 * 1 2 3
25 25 H 1.08995 * 109.47068 * 64.62744 * 1 2 3
26 26 H 1.08999 * 109.47361 * 239.99789 * 2 1 3
27 27 H 1.09002 * 109.47269 * 119.99978 * 2 1 3
28 28 H 0.97004 * 120.00495 * 180.02562 * 8 7 5
29 29 H 1.09000 * 109.48643 * 56.84872 * 14 13 3
30 30 H 1.08997 * 109.48867 * 296.77972 * 14 13 3
31 31 H 1.09006 * 109.47122 * 300.10514 * 17 15 14
32 32 H 1.09002 * 109.47807 * 60.10399 * 17 15 14
33 33 H 1.09003 * 109.47495 * 180.11316 * 17 15 14
34 34 H 1.00900 * 111.00504 * 176.81327 * 18 15 14
35 35 H 1.09005 * 109.48557 * 299.35132 * 19 18 15
36 36 H 1.08996 * 109.50641 * 179.29966 * 19 18 15
37 37 H 1.09006 * 109.46678 * 179.89277 * 22 20 13
38 38 H 1.08998 * 109.47067 * 59.89510 * 22 20 13
39 39 H 1.08998 * 109.46852 * 299.88554 * 22 20 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 3.1295 1.4427 -0.0343
5 6 1.5769 2.1391 1.2535
6 1 0.9534 3.0181 1.1840
7 6 1.9493 1.6541 2.4894
8 7 2.7083 0.5835 2.5742
9 14 1.3746 2.5171 4.0433
10 1 -0.1097 2.5163 4.0899
11 1 1.9072 1.8034 5.2316
12 1 1.8691 3.9174 4.0435
13 7 1.5129 2.1482 -1.1755
14 6 1.9310 1.4857 -2.4189
15 6 1.2978 2.2027 -3.6136
16 1 0.2119 2.1394 -3.5420
17 6 1.7635 1.5403 -4.9118
18 7 1.7080 3.6137 -3.6085
19 6 1.2900 4.2763 -2.3652
20 6 1.9232 3.5594 -1.1705
21 1 1.5916 4.0314 -0.2457
22 6 3.4473 3.6482 -1.2711
23 1 -0.3633 -1.0243 0.0829
24 1 -0.3633 0.5840 0.8457
25 1 -0.3633 0.4403 -0.9285
26 1 1.8934 -0.5139 -0.8899
27 1 1.8934 -0.5138 0.8900
28 1 2.9700 0.2421 3.4436
29 1 1.6048 0.4458 -2.4042
30 1 3.0168 1.5255 -2.5047
31 1 2.8494 1.6030 -4.9825
32 1 1.4591 0.4937 -4.9153
33 1 1.3139 2.0524 -5.7626
34 1 1.3459 4.0986 -4.4160
35 1 0.2040 4.2366 -2.2794
36 1 1.6158 5.3163 -2.3797
37 1 3.7511 4.6950 -1.2692
38 1 3.7785 3.1753 -2.1956
39 1 3.8979 3.1376 -0.4200
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000083118949.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:09:42
Heat of formation + Delta-G solvation = -15.165267 kcal
Electronic energy + Delta-G solvation = -17313.618451 eV
Core-core repulsion = 14869.110291 eV
Total energy + Delta-G solvation = -2444.508160 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-40.61895 -37.06436 -34.58064 -33.81448 -32.22201 -29.60887 -28.75218 -26.50083
-25.83460 -24.82605 -22.36661 -21.12355 -19.50710 -17.89770 -17.83358 -16.60190
-16.10913 -15.76207 -15.44224 -15.26166 -14.95522 -14.31556 -14.05211 -13.99261
-13.44749 -12.95158 -12.93218 -12.80428 -12.72299 -12.58339 -12.48467 -12.32139
-11.98813 -11.86161 -11.77014 -11.47836 -11.35834 -10.97611 -10.67071 -10.41352
-9.31588 -8.74577 -8.05330 -6.14442 1.42180 1.43077 1.50084 2.44166
3.22269 3.33285 3.41218 4.04187 4.16628 4.29417 4.41013 4.47622
4.61383 4.64876 4.73030 4.80002 4.81808 4.85839 4.91498 4.94417
4.96311 5.14113 5.16531 5.22432 5.28524 5.41362 5.46933 5.54900
5.59768 5.75842 5.81830 5.89631 6.12993 6.35813 6.47677 6.67165
6.85326 6.99548 7.52789 8.99968
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.034123 B = 0.009333 C = 0.008238
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 820.373222 B = 2999.478204 C = 3398.130160
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.105 4.105
2 C -0.109 4.109
3 C 0.225 3.775
4 H -0.038 1.038
5 C -0.499 4.499
6 H 0.054 0.946
7 C 0.014 3.986
8 N -0.920 5.920
9 Si 0.949 3.051
10 H -0.273 1.273
11 H -0.287 1.287
12 H -0.274 1.274
13 N -0.528 5.528
14 C 0.057 3.943
15 C 0.092 3.908
16 H 0.037 0.963
17 C -0.134 4.134
18 N -0.682 5.682
19 C 0.075 3.925
20 C 0.083 3.917
21 H 0.068 0.932
22 C -0.155 4.155
23 H 0.034 0.966
24 H 0.035 0.965
25 H 0.049 0.951
26 H 0.025 0.975
27 H 0.061 0.939
28 H 0.259 0.741
29 H 0.067 0.933
30 H 0.017 0.983
31 H 0.055 0.945
32 H 0.065 0.935
33 H 0.073 0.927
34 H 0.351 0.649
35 H 0.030 0.970
36 H 0.090 0.910
37 H 0.061 0.939
38 H 0.058 0.942
39 H 0.021 0.979
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.002 4.166 -11.766 12.838
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C -0.148 4.148
3 C 0.118 3.882
4 H -0.021 1.021
5 C -0.537 4.537
6 H 0.072 0.928
7 C -0.185 4.185
8 N -0.560 5.560
9 Si 0.775 3.225
10 H -0.198 1.198
11 H -0.213 1.213
12 H -0.199 1.199
13 N -0.252 5.252
14 C -0.071 4.071
15 C -0.019 4.019
16 H 0.055 0.945
17 C -0.192 4.192
18 N -0.316 5.316
19 C -0.055 4.055
20 C -0.026 4.026
21 H 0.086 0.914
22 C -0.213 4.213
23 H 0.054 0.946
24 H 0.054 0.946
25 H 0.068 0.932
26 H 0.043 0.957
27 H 0.079 0.921
28 H 0.068 0.932
29 H 0.085 0.915
30 H 0.036 0.964
31 H 0.074 0.926
32 H 0.084 0.916
33 H 0.092 0.908
34 H 0.170 0.830
35 H 0.048 0.952
36 H 0.108 0.892
37 H 0.080 0.920
38 H 0.077 0.923
39 H 0.040 0.960
Dipole moment (debyes) X Y Z Total
from point charges -2.807 3.897 -11.375 12.347
hybrid contribution 0.015 0.226 1.189 1.210
sum -2.792 4.123 -10.186 11.338
Atomic orbital electron populations
1.21292 0.95755 0.98439 1.00773 1.21465 0.96376 0.97827 0.99084
1.18989 0.90411 0.91292 0.87464 1.02081 1.21217 1.30270 1.11481
0.90765 0.92783 1.25589 0.95501 0.95733 1.01633 1.70003 1.37522
1.23774 1.24715 0.85754 0.78682 0.78688 0.79367 1.19814 1.21304
1.19911 1.62403 1.59056 1.01824 1.01913 1.22207 0.96871 0.97983
0.90076 1.21468 0.96791 0.88674 0.94925 0.94535 1.21712 1.01729
1.00490 0.95279 1.60485 1.64210 1.02380 1.04506 1.21910 0.96949
0.97662 0.88935 1.21641 0.93202 0.89936 0.97788 0.91420 1.22072
0.97898 1.01255 1.00117 0.94648 0.94570 0.93199 0.95685 0.92051
0.93231 0.91487 0.96450 0.92579 0.91637 0.90799 0.82998 0.95184
0.89157 0.91995 0.92300 0.95971
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -4.61 9.52 71.98 0.69 -3.93 16
2 C -0.11 -5.31 5.06 30.60 0.15 -5.16 16
3 C 0.23 11.39 1.35 44.17 0.06 11.45 16
4 H -0.04 -2.21 6.55 -2.39 -0.02 -2.23 16
5 C -0.50 -27.06 6.64 25.60 0.17 -26.89 16
6 H 0.05 2.94 6.47 -2.91 -0.02 2.92 16
7 C 0.01 0.76 5.30 84.66 0.45 1.20 16
8 N -0.92 -53.30 11.30 21.45 0.24 -53.06 16
9 Si 0.95 44.02 29.54 68.60 2.03 46.05 16
10 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16
11 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16
12 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16
13 N -0.53 -22.33 3.76 -849.80 -3.20 -25.53 16
14 C 0.06 2.10 4.20 86.31 0.36 2.46 16
15 C 0.09 2.60 3.19 44.92 0.14 2.75 16
16 H 0.04 1.09 8.14 -2.38 -0.02 1.07 16
17 C -0.13 -2.94 9.46 71.98 0.68 -2.26 16
18 N -0.68 -18.18 5.86 -491.14 -2.88 -21.06 16
19 C 0.08 2.25 6.15 86.31 0.53 2.78 16
20 C 0.08 3.25 2.69 44.92 0.12 3.37 16
21 H 0.07 2.94 6.18 -2.39 -0.01 2.93 16
22 C -0.15 -5.98 8.36 71.98 0.60 -5.37 16
23 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16
24 H 0.04 1.73 7.13 -2.38 -0.02 1.71 16
25 H 0.05 2.04 7.71 -2.39 -0.02 2.02 16
26 H 0.02 1.12 6.43 -2.39 -0.02 1.10 16
27 H 0.06 3.38 6.02 -2.39 -0.01 3.37 16
28 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16
29 H 0.07 2.49 6.17 -2.39 -0.01 2.48 16
30 H 0.02 0.69 6.34 -2.39 -0.02 0.67 16
31 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16
32 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16
33 H 0.07 1.28 8.14 -2.39 -0.02 1.27 16
34 H 0.35 7.26 8.83 -89.69 -0.79 6.47 16
35 H 0.03 0.92 8.14 -2.38 -0.02 0.90 16
36 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16
37 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16
38 H 0.06 2.22 5.94 -2.39 -0.01 2.21 16
39 H 0.02 0.99 6.55 -2.39 -0.02 0.97 16
Total: -1.00 -59.62 287.47 0.38 -59.24
By element:
Atomic # 1 Polarization: 13.73 SS G_CDS: 0.23 Total: 13.96 kcal
Atomic # 6 Polarization: -23.56 SS G_CDS: 3.96 Total: -19.60 kcal
Atomic # 7 Polarization: -93.81 SS G_CDS: -5.83 Total: -99.65 kcal
Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal
Total: -59.62 0.38 -59.24 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000083118949.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 44.074 kcal
(2) G-P(sol) polarization free energy of solvation -59.620 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.546 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.380 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.239 kcal
(6) G-S(sol) free energy of system = (1) + (5) -15.165 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds