Wall clock time and date at job start Mon Mar 30 2020 03:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.47315 * 2 1 4 4 H 1.09005 * 109.46862 * 305.00337 * 3 2 1 5 5 C 1.50702 * 109.47047 * 185.00041 * 3 2 1 6 6 H 1.07998 * 119.99712 * 244.95927 * 5 3 2 7 7 C 1.37872 * 119.99868 * 64.96688 * 5 3 2 8 8 N 1.31515 * 120.00216 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00027 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47314 * 59.99705 * 9 7 5 11 11 H 1.48504 * 109.47492 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47331 * 299.99559 * 9 7 5 13 13 N 1.46905 * 109.46965 * 65.00244 * 3 2 1 14 14 C 1.46953 * 111.00153 * 70.47103 * 13 3 2 15 15 C 1.53043 * 109.36419 * 183.18872 * 14 13 3 16 16 N 1.46956 * 109.36379 * 301.59795 * 15 14 13 17 17 C 1.47002 * 110.89306 * 59.32302 * 16 15 14 18 18 C 1.46953 * 110.99859 * 194.27430 * 13 3 2 19 19 C 1.53002 * 109.48845 * 296.77866 * 18 13 3 20 20 C 1.53001 * 109.49140 * 56.82184 * 18 13 3 21 21 H 1.09005 * 109.46562 * 299.99817 * 1 2 3 22 22 H 1.09000 * 109.47183 * 59.99463 * 1 2 3 23 23 H 1.09001 * 109.47274 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47083 * 240.00244 * 2 1 3 25 25 H 1.08999 * 109.47526 * 119.99840 * 2 1 3 26 26 H 0.97002 * 120.00142 * 180.02562 * 8 7 5 27 27 H 1.09001 * 109.49022 * 303.15758 * 14 13 3 28 28 H 1.09001 * 109.48878 * 63.19511 * 14 13 3 29 29 H 1.09000 * 109.49100 * 61.56732 * 15 14 13 30 30 H 1.09008 * 109.48997 * 181.63551 * 15 14 13 31 31 H 1.00902 * 111.00391 * 295.45440 * 16 15 14 32 32 H 1.08991 * 109.51989 * 180.71873 * 17 16 15 33 33 H 1.09008 * 109.47968 * 60.63715 * 17 16 15 34 34 H 1.08997 * 109.47339 * 187.46320 * 19 18 13 35 35 H 1.09001 * 109.47345 * 67.45996 * 19 18 13 36 36 H 1.08999 * 109.47252 * 307.45922 * 19 18 13 37 37 H 1.09008 * 109.46872 * 296.99692 * 20 18 13 38 38 H 1.08992 * 109.47365 * 56.99900 * 20 18 13 39 39 H 1.08999 * 109.47176 * 177.00194 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1502 1.8160 0.6875 7 6 4.1394 0.9715 -1.2729 8 7 3.3987 0.5185 -2.2607 9 14 6.0010 0.9743 -1.4267 10 1 6.5882 0.1400 -0.3477 11 1 6.3895 0.4188 -2.7481 12 1 6.5056 2.3658 -1.3066 13 7 1.6515 2.0993 1.2553 14 6 2.4120 1.5580 2.3903 15 6 1.9229 2.2097 3.6858 16 7 2.0891 3.6667 3.5912 17 6 1.3285 4.2085 2.4560 18 6 1.8176 3.5563 1.1607 19 6 3.2959 3.8888 0.9484 20 6 1.0004 4.0878 -0.0186 21 1 -0.3633 0.5138 0.8901 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.8191 0.1855 -3.0690 27 1 2.2629 0.4797 2.4468 28 1 3.4719 1.7717 2.2528 29 1 0.8698 1.9728 3.8370 30 1 2.5054 1.8310 4.5258 31 1 3.0646 3.9159 3.5246 32 1 1.4775 5.2867 2.3991 33 1 0.2685 3.9943 2.5932 34 1 3.4382 4.9677 1.0106 35 1 3.6100 3.5369 -0.0342 36 1 3.8926 3.3988 1.7177 37 1 1.3829 3.6626 -0.9466 38 1 -0.0448 3.8053 0.1069 39 1 1.0811 5.1742 -0.0563 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083842790.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:52 Heat of formation + Delta-G solvation = 9.931478 kcal Electronic energy + Delta-G solvation = -17712.305597 eV Core-core repulsion = 15268.885714 eV Total energy + Delta-G solvation = -2443.419883 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.55421 -35.10094 -32.96954 -31.97052 -30.68023 -27.18020 -26.89238 -26.16212 -24.04765 -22.56587 -21.37158 -19.58966 -17.80474 -16.51828 -15.54985 -14.87557 -14.60562 -14.30963 -13.93318 -13.42803 -13.03666 -12.78028 -12.33074 -12.01844 -11.61362 -11.54695 -11.26884 -11.21503 -11.06449 -10.92125 -10.71850 -10.64704 -10.52705 -10.35816 -10.22728 -9.64949 -9.54863 -9.43919 -8.93471 -8.34591 -7.83791 -7.07478 -6.01384 -4.08577 3.24444 3.30498 3.32918 4.37145 4.75573 4.93624 5.23761 5.56360 5.66280 5.80386 5.81744 5.94184 6.04616 6.10294 6.30524 6.33102 6.37818 6.44808 6.47872 6.52291 6.54119 6.66419 6.76341 6.81837 6.97491 7.10516 7.17301 7.31082 7.37314 7.45711 7.61441 7.73088 7.78091 7.97738 8.15882 8.32076 8.49485 8.97570 9.53790 10.99694 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.025199 B = 0.011881 C = 0.010327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.886928 B = 2356.129248 C = 2710.791496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.105 4.105 3 C 0.208 3.792 4 H 0.050 0.950 5 C -0.540 4.540 6 H 0.064 0.936 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.881 3.119 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.519 5.519 14 C 0.021 3.979 15 C 0.057 3.943 16 N -0.689 5.689 17 C 0.071 3.929 18 C 0.080 3.920 19 C -0.179 4.179 20 C -0.133 4.133 21 H 0.048 0.952 22 H 0.038 0.962 23 H 0.024 0.976 24 H 0.081 0.919 25 H 0.030 0.970 26 H 0.261 0.739 27 H 0.070 0.930 28 H 0.045 0.955 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.334 0.666 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.027 0.973 35 H 0.099 0.901 36 H 0.045 0.955 37 H 0.067 0.933 38 H 0.052 0.948 39 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.785 4.112 6.275 8.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.143 4.143 3 C 0.101 3.899 4 H 0.068 0.932 5 C -0.579 4.579 6 H 0.082 0.918 7 C -0.136 4.136 8 N -0.524 5.524 9 Si 0.709 3.291 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.243 5.243 14 C -0.109 4.109 15 C -0.073 4.073 16 N -0.317 5.317 17 C -0.060 4.060 18 C -0.012 4.012 19 C -0.237 4.237 20 C -0.191 4.191 21 H 0.067 0.933 22 H 0.057 0.943 23 H 0.043 0.957 24 H 0.099 0.901 25 H 0.049 0.951 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.063 0.937 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.151 0.849 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.046 0.954 35 H 0.117 0.883 36 H 0.064 0.936 37 H 0.086 0.914 38 H 0.071 0.929 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.790 4.069 6.648 8.667 hybrid contribution 2.611 -0.304 -1.152 2.870 sum -1.179 3.765 5.496 6.765 Atomic orbital electron populations 1.21699 0.98824 0.98365 1.00588 1.21516 0.92312 0.99422 1.01077 1.19403 0.93120 0.90928 0.86421 0.93216 1.21918 0.92982 1.41444 1.01511 0.91758 1.24901 0.97394 0.95267 0.96022 1.69900 1.34774 1.41790 1.05908 0.86837 0.86704 0.78298 0.77244 1.20440 1.21332 1.20397 1.62726 1.54504 1.01627 1.05484 1.22675 0.97132 0.99787 0.91308 1.22126 1.01552 0.87155 0.96510 1.60884 1.15296 1.12000 1.43532 1.22117 0.98352 0.97535 0.87950 1.21483 0.94222 0.90270 0.95230 1.22838 0.97247 0.98279 1.05316 1.21808 0.99665 0.98879 0.98758 0.93281 0.94287 0.95714 0.90074 0.95094 0.92925 0.91195 0.93731 0.91084 0.91719 0.84935 0.91687 0.91082 0.95372 0.88268 0.93589 0.91368 0.92898 0.93742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.80 37.16 0.36 -2.40 16 2 C -0.10 -2.42 5.27 -26.73 -0.14 -2.56 16 3 C 0.21 4.82 1.35 -68.86 -0.09 4.73 16 4 H 0.05 1.29 5.61 -51.93 -0.29 1.00 16 5 C -0.54 -13.52 5.05 -34.44 -0.17 -13.69 16 6 H 0.06 1.61 4.15 -52.49 -0.22 1.39 16 7 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 8 N -0.89 -24.28 11.68 55.43 0.65 -23.63 16 9 Si 0.88 20.66 29.54 -169.99 -5.02 15.64 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 N -0.52 -10.36 3.90 -212.32 -0.83 -11.19 16 14 C 0.02 0.39 4.62 -3.77 -0.02 0.38 16 15 C 0.06 0.90 6.72 -3.77 -0.03 0.88 16 16 N -0.69 -10.78 6.84 -113.61 -0.78 -11.55 16 17 C 0.07 1.13 5.49 -3.74 -0.02 1.11 16 18 C 0.08 1.45 0.68 -131.55 -0.09 1.36 16 19 C -0.18 -3.41 6.32 37.16 0.23 -3.17 16 20 C -0.13 -2.36 8.09 37.16 0.30 -2.06 16 21 H 0.05 0.96 7.75 -51.93 -0.40 0.55 16 22 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.08 2.10 6.38 -51.93 -0.33 1.77 16 25 H 0.03 0.70 6.46 -51.93 -0.34 0.37 16 26 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 27 H 0.07 1.38 6.44 -51.93 -0.33 1.05 16 28 H 0.04 0.92 4.48 -51.93 -0.23 0.69 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.06 0.93 8.14 -51.92 -0.42 0.50 16 31 H 0.33 5.11 7.46 -39.29 -0.29 4.82 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.07 1.16 8.14 -51.92 -0.42 0.74 16 34 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.10 2.23 5.64 -51.93 -0.29 1.94 16 36 H 0.05 0.88 4.61 -51.93 -0.24 0.64 16 37 H 0.07 1.39 6.23 -51.92 -0.32 1.06 16 38 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 278.75 15.07 4.20 4.20 Total: -1.00 -25.62 278.75 -7.77 -33.38 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -6.23 Total: 6.93 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: 0.24 Total: -13.78 kcal Atomic # 7 Polarization: -45.42 SS G_CDS: -0.96 Total: -46.37 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -25.62 -7.77 -33.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083842790.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.315 kcal (2) G-P(sol) polarization free energy of solvation -25.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds