Wall clock time and date at job start Mon Mar 30 2020 03:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.47315 * 2 1 4 4 H 1.09005 * 109.46862 * 305.00337 * 3 2 1 5 5 C 1.50702 * 109.47047 * 185.00041 * 3 2 1 6 6 H 1.07998 * 119.99712 * 244.95927 * 5 3 2 7 7 C 1.37872 * 119.99868 * 64.96688 * 5 3 2 8 8 N 1.31515 * 120.00216 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00027 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47314 * 59.99705 * 9 7 5 11 11 H 1.48504 * 109.47492 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47331 * 299.99559 * 9 7 5 13 13 N 1.46905 * 109.46965 * 65.00244 * 3 2 1 14 14 C 1.46953 * 111.00153 * 70.47103 * 13 3 2 15 15 C 1.53043 * 109.36419 * 183.18872 * 14 13 3 16 16 N 1.46956 * 109.36379 * 301.59795 * 15 14 13 17 17 C 1.47002 * 110.89306 * 59.32302 * 16 15 14 18 18 C 1.46953 * 110.99859 * 194.27430 * 13 3 2 19 19 C 1.53002 * 109.48845 * 296.77866 * 18 13 3 20 20 C 1.53001 * 109.49140 * 56.82184 * 18 13 3 21 21 H 1.09005 * 109.46562 * 299.99817 * 1 2 3 22 22 H 1.09000 * 109.47183 * 59.99463 * 1 2 3 23 23 H 1.09001 * 109.47274 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47083 * 240.00244 * 2 1 3 25 25 H 1.08999 * 109.47526 * 119.99840 * 2 1 3 26 26 H 0.97002 * 120.00142 * 180.02562 * 8 7 5 27 27 H 1.09001 * 109.49022 * 303.15758 * 14 13 3 28 28 H 1.09001 * 109.48878 * 63.19511 * 14 13 3 29 29 H 1.09000 * 109.49100 * 61.56732 * 15 14 13 30 30 H 1.09008 * 109.48997 * 181.63551 * 15 14 13 31 31 H 1.00902 * 111.00391 * 295.45440 * 16 15 14 32 32 H 1.08991 * 109.51989 * 180.71873 * 17 16 15 33 33 H 1.09008 * 109.47968 * 60.63715 * 17 16 15 34 34 H 1.08997 * 109.47339 * 187.46320 * 19 18 13 35 35 H 1.09001 * 109.47345 * 67.45996 * 19 18 13 36 36 H 1.08999 * 109.47252 * 307.45922 * 19 18 13 37 37 H 1.09008 * 109.46872 * 296.99692 * 20 18 13 38 38 H 1.08992 * 109.47365 * 56.99900 * 20 18 13 39 39 H 1.08999 * 109.47176 * 177.00194 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1502 1.8160 0.6875 7 6 4.1394 0.9715 -1.2729 8 7 3.3987 0.5185 -2.2607 9 14 6.0010 0.9743 -1.4267 10 1 6.5882 0.1400 -0.3477 11 1 6.3895 0.4188 -2.7481 12 1 6.5056 2.3658 -1.3066 13 7 1.6515 2.0993 1.2553 14 6 2.4120 1.5580 2.3903 15 6 1.9229 2.2097 3.6858 16 7 2.0891 3.6667 3.5912 17 6 1.3285 4.2085 2.4560 18 6 1.8176 3.5563 1.1607 19 6 3.2959 3.8888 0.9484 20 6 1.0004 4.0878 -0.0186 21 1 -0.3633 0.5138 0.8901 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.8191 0.1855 -3.0690 27 1 2.2629 0.4797 2.4468 28 1 3.4719 1.7717 2.2528 29 1 0.8698 1.9728 3.8370 30 1 2.5054 1.8310 4.5258 31 1 3.0646 3.9159 3.5246 32 1 1.4775 5.2867 2.3991 33 1 0.2685 3.9943 2.5932 34 1 3.4382 4.9677 1.0106 35 1 3.6100 3.5369 -0.0342 36 1 3.8926 3.3988 1.7177 37 1 1.3829 3.6626 -0.9466 38 1 -0.0448 3.8053 0.1069 39 1 1.0811 5.1742 -0.0563 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083842790.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:52 Heat of formation + Delta-G solvation = -7.192055 kcal Electronic energy + Delta-G solvation = -17713.048129 eV Core-core repulsion = 15268.885714 eV Total energy + Delta-G solvation = -2444.162416 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.07969 -36.74483 -34.46160 -33.85781 -32.29966 -28.89747 -28.43360 -27.72923 -25.59822 -24.33034 -22.77964 -21.33489 -19.38642 -18.35003 -17.15488 -16.60510 -16.10375 -15.88087 -15.46514 -15.06317 -14.61881 -14.53183 -13.89088 -13.62440 -13.22619 -13.18753 -13.03670 -12.75051 -12.62659 -12.49558 -12.43599 -12.28522 -12.10596 -11.91424 -11.82791 -11.38043 -11.31491 -11.16162 -10.76975 -10.34252 -9.22286 -8.76539 -7.99218 -6.12849 1.35211 1.37721 1.42550 2.41024 3.20958 3.34833 3.52781 4.12571 4.22107 4.41124 4.43915 4.46790 4.58910 4.72523 4.75203 4.77886 4.86381 4.89976 4.97490 5.03846 5.06711 5.09463 5.24194 5.31487 5.36481 5.41937 5.46779 5.59622 5.65155 5.74460 5.84893 6.07287 6.12556 6.28978 6.44232 6.55248 6.80140 7.03966 7.51647 8.97435 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.025199 B = 0.011881 C = 0.010327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.886928 B = 2356.129248 C = 2710.791496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.102 4.102 3 C 0.215 3.785 4 H 0.022 0.978 5 C -0.531 4.531 6 H 0.063 0.937 7 C 0.019 3.981 8 N -0.915 5.915 9 Si 0.933 3.067 10 H -0.277 1.277 11 H -0.290 1.290 12 H -0.275 1.275 13 N -0.517 5.517 14 C 0.024 3.976 15 C 0.067 3.933 16 N -0.682 5.682 17 C 0.079 3.921 18 C 0.074 3.926 19 C -0.169 4.169 20 C -0.127 4.127 21 H 0.057 0.943 22 H 0.031 0.969 23 H 0.042 0.958 24 H 0.048 0.952 25 H 0.028 0.972 26 H 0.257 0.743 27 H 0.058 0.942 28 H 0.026 0.974 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.338 0.662 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.051 0.949 35 H 0.060 0.940 36 H 0.042 0.958 37 H 0.033 0.967 38 H 0.057 0.943 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.088 5.227 8.139 10.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.140 4.140 3 C 0.108 3.892 4 H 0.039 0.961 5 C -0.571 4.571 6 H 0.081 0.919 7 C -0.180 4.180 8 N -0.555 5.555 9 Si 0.760 3.240 10 H -0.203 1.203 11 H -0.216 1.216 12 H -0.200 1.200 13 N -0.241 5.241 14 C -0.106 4.106 15 C -0.063 4.063 16 N -0.310 5.310 17 C -0.051 4.051 18 C -0.017 4.017 19 C -0.227 4.227 20 C -0.185 4.185 21 H 0.076 0.924 22 H 0.050 0.950 23 H 0.061 0.939 24 H 0.067 0.933 25 H 0.047 0.953 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.044 0.956 29 H 0.092 0.908 30 H 0.104 0.896 31 H 0.155 0.845 32 H 0.105 0.895 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.052 0.948 38 H 0.076 0.924 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.087 5.196 8.532 10.794 hybrid contribution 2.697 -0.616 -1.706 3.250 sum -1.390 4.581 6.826 8.337 Atomic orbital electron populations 1.21546 0.96387 0.99592 1.00602 1.21384 0.94465 0.98907 0.99265 1.19139 0.91870 0.90941 0.87227 0.96069 1.22172 0.94165 1.39747 1.00974 0.91864 1.25515 1.00646 0.95710 0.96165 1.70025 1.35914 1.43318 1.06282 0.86009 0.82909 0.78199 0.76874 1.20254 1.21613 1.20044 1.62685 1.54368 1.02787 1.04291 1.22692 0.96012 0.99466 0.92451 1.22074 1.01924 0.87131 0.95190 1.60900 1.15611 1.11508 1.42983 1.22082 0.98332 0.98466 0.86237 1.21673 0.93851 0.89199 0.96992 1.22652 0.97738 0.99592 1.02757 1.21739 0.99556 1.00304 0.96902 0.92360 0.94997 0.93901 0.93331 0.95329 0.93386 0.92388 0.95582 0.90797 0.89597 0.84472 0.89538 0.90861 0.93049 0.92132 0.93936 0.94821 0.92434 0.91152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.91 9.80 71.98 0.71 -4.21 16 2 C -0.10 -4.75 5.27 30.60 0.16 -4.59 16 3 C 0.22 10.16 1.35 44.17 0.06 10.22 16 4 H 0.02 1.14 5.61 -2.38 -0.01 1.13 16 5 C -0.53 -27.08 5.05 25.60 0.13 -26.95 16 6 H 0.06 3.19 4.15 -2.91 -0.01 3.18 16 7 C 0.02 1.00 5.30 84.65 0.45 1.45 16 8 N -0.92 -51.83 11.68 21.45 0.25 -51.58 16 9 Si 0.93 43.10 29.54 68.60 2.03 45.13 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 11 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 12 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 13 N -0.52 -20.24 3.90 -825.64 -3.22 -23.46 16 14 C 0.02 0.87 4.62 86.31 0.40 1.27 16 15 C 0.07 1.94 6.72 86.31 0.58 2.52 16 16 N -0.68 -18.97 6.84 -513.34 -3.51 -22.48 16 17 C 0.08 2.26 5.49 86.30 0.47 2.73 16 18 C 0.07 2.59 0.68 3.53 0.00 2.59 16 19 C -0.17 -6.23 6.32 71.98 0.45 -5.78 16 20 C -0.13 -4.37 8.09 71.98 0.58 -3.79 16 21 H 0.06 2.18 7.75 -2.38 -0.02 2.17 16 22 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.05 2.59 6.38 -2.38 -0.02 2.58 16 25 H 0.03 1.31 6.46 -2.39 -0.02 1.29 16 26 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 27 H 0.06 2.24 6.44 -2.39 -0.02 2.23 16 28 H 0.03 1.05 4.48 -2.39 -0.01 1.04 16 29 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.09 2.17 8.14 -2.38 -0.02 2.15 16 31 H 0.34 9.20 7.46 -89.69 -0.67 8.53 16 32 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 34 H 0.05 1.62 8.14 -2.39 -0.02 1.61 16 35 H 0.06 2.72 5.64 -2.39 -0.01 2.71 16 36 H 0.04 1.57 4.61 -2.39 -0.01 1.56 16 37 H 0.03 1.38 6.23 -2.38 -0.01 1.36 16 38 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -55.34 278.75 -0.09 -55.42 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: 0.37 Total: 21.51 kcal Atomic # 6 Polarization: -28.53 SS G_CDS: 4.00 Total: -24.54 kcal Atomic # 7 Polarization: -91.04 SS G_CDS: -6.48 Total: -97.52 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -55.34 -0.09 -55.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083842790.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.232 kcal (2) G-P(sol) polarization free energy of solvation -55.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds