Wall clock time and date at job start Mon Mar 30 2020 03:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47140 * 2 1 4 4 H 1.08997 * 109.47404 * 54.42402 * 3 2 1 5 5 C 1.50703 * 109.47111 * 174.42572 * 3 2 1 6 6 H 1.07994 * 120.00291 * 119.99843 * 5 3 2 7 7 C 1.37877 * 119.99531 * 299.99456 * 5 3 2 8 8 N 1.31515 * 119.99875 * 180.02562 * 7 5 3 9 9 Si 1.86799 * 120.00210 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.47311 * 90.00027 * 9 7 5 11 11 H 1.48502 * 109.47114 * 209.99844 * 9 7 5 12 12 H 1.48500 * 109.47335 * 329.99943 * 9 7 5 13 13 N 1.46905 * 109.46940 * 294.41894 * 3 2 1 14 14 C 1.46902 * 110.99980 * 154.19062 * 13 3 2 15 15 C 1.52997 * 109.47198 * 185.69420 * 14 13 3 16 16 C 1.53119 * 109.52201 * 294.69006 * 15 14 13 17 17 C 1.53044 * 109.27580 * 182.44513 * 16 15 14 18 18 N 1.46839 * 109.52718 * 59.17234 * 17 16 15 19 19 C 1.46847 * 111.20256 * 298.26003 * 18 17 16 20 20 C 1.53041 * 109.52122 * 61.73804 * 19 18 17 21 21 H 1.08999 * 109.47231 * 55.36175 * 1 2 3 22 22 H 1.08996 * 109.47374 * 175.36147 * 1 2 3 23 23 H 1.09002 * 109.46979 * 295.35809 * 1 2 3 24 24 H 1.09001 * 109.46638 * 239.99518 * 2 1 3 25 25 H 1.08999 * 109.46590 * 119.99793 * 2 1 3 26 26 H 0.96996 * 120.00257 * 180.02562 * 8 7 5 27 27 H 1.00900 * 111.00012 * 278.14999 * 13 3 2 28 28 H 1.08999 * 109.47257 * 305.69722 * 14 13 3 29 29 H 1.09003 * 109.46811 * 65.69522 * 14 13 3 30 30 H 1.09002 * 109.52154 * 54.87276 * 15 14 13 31 31 H 1.09006 * 109.50013 * 302.37422 * 16 15 14 32 32 H 1.08992 * 109.50728 * 62.49601 * 16 15 14 33 33 H 1.09000 * 109.45863 * 299.15516 * 17 16 15 34 34 H 1.09000 * 109.45823 * 179.19625 * 17 16 15 35 35 H 1.00898 * 110.99877 * 62.36003 * 18 17 16 36 36 H 1.08999 * 109.45842 * 301.73122 * 19 18 17 37 37 H 1.08994 * 109.45532 * 181.75187 * 19 18 17 38 38 H 1.09002 * 109.50178 * 180.88271 * 20 19 18 39 39 H 1.09006 * 109.50281 * 60.76560 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5975 1.9843 0.8358 5 6 3.5407 1.4447 0.1380 6 1 4.1533 1.8866 -0.6338 7 6 4.1315 0.8826 1.2498 8 7 5.4411 0.8849 1.3705 9 14 3.0719 0.1176 2.5845 10 1 2.8539 -1.3196 2.2806 11 1 3.7568 0.2480 3.8957 12 1 1.7626 0.8162 2.6383 13 7 1.6634 2.0950 -1.2611 14 6 1.5642 3.5508 -1.0915 15 6 1.0346 4.1796 -2.3818 16 6 2.0551 3.9787 -3.5055 17 6 1.5476 4.6623 -4.7772 18 7 1.3518 6.0947 -4.5197 19 6 0.3412 6.3136 -3.4771 20 6 0.8127 5.6793 -2.1666 21 1 -0.3634 0.5841 -0.8455 22 1 -0.3634 -1.0242 -0.0831 23 1 -0.3633 0.4401 0.9287 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 5.8568 0.4891 2.1524 27 1 2.3119 1.8600 -1.9976 28 1 0.8825 3.7754 -0.2713 29 1 2.5499 3.9583 -0.8667 30 1 0.0913 3.7076 -2.6566 31 1 3.0094 4.4168 -3.2129 32 1 2.1854 2.9128 -3.6924 33 1 0.6001 4.2144 -5.0769 34 1 2.2786 4.5333 -5.5753 35 1 2.2237 6.5410 -4.2775 36 1 -0.6006 5.8578 -3.7828 37 1 0.1962 7.3839 -3.3310 38 1 0.0553 5.8283 -1.3969 39 1 1.7475 6.1441 -1.8529 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086701083.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:48 Heat of formation + Delta-G solvation = -19.591902 kcal Electronic energy + Delta-G solvation = -16389.333300 eV Core-core repulsion = 13944.633187 eV Total energy + Delta-G solvation = -2444.700113 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.93507 -36.38196 -33.42245 -31.95618 -30.84101 -30.30963 -27.09750 -24.80490 -22.84939 -22.46752 -21.41339 -19.90692 -19.72752 -17.02642 -15.94678 -15.21260 -14.85599 -14.60750 -14.22451 -13.92990 -13.26260 -13.12559 -13.07271 -12.69691 -12.28066 -12.10898 -11.79533 -11.59898 -11.44178 -11.13400 -11.08577 -10.77894 -10.63883 -10.30561 -10.19798 -10.05085 -9.76380 -9.45246 -9.22418 -8.60324 -8.32987 -7.34989 -6.14902 -4.15792 3.24214 3.34599 3.37238 4.32976 4.35162 4.78151 4.93542 5.13460 5.18754 5.23020 5.35144 5.47523 5.54542 5.71213 5.88183 5.91245 5.98169 6.02224 6.06354 6.10663 6.16994 6.25468 6.30954 6.37841 6.47424 6.69357 6.71214 6.75243 6.97927 7.02455 7.10112 7.27498 7.35566 7.55312 8.03951 8.37635 8.48269 8.87371 9.48817 10.98087 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.036121 B = 0.006619 C = 0.006185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.983489 B = 4229.422671 C = 4526.360405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 C 0.183 3.817 4 H 0.030 0.970 5 C -0.546 4.546 6 H 0.071 0.929 7 C 0.072 3.928 8 N -0.899 5.899 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.298 1.298 12 H -0.265 1.265 13 N -0.681 5.681 14 C 0.071 3.929 15 C -0.082 4.082 16 C -0.152 4.152 17 C 0.057 3.943 18 N -0.689 5.689 19 C 0.058 3.942 20 C -0.153 4.153 21 H 0.063 0.937 22 H 0.033 0.967 23 H 0.037 0.963 24 H 0.057 0.943 25 H 0.044 0.956 26 H 0.264 0.736 27 H 0.333 0.667 28 H 0.058 0.942 29 H 0.030 0.970 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.338 0.662 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.424 6.884 -7.656 13.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.153 4.153 3 C 0.074 3.926 4 H 0.048 0.952 5 C -0.584 4.584 6 H 0.089 0.911 7 C -0.131 4.131 8 N -0.536 5.536 9 Si 0.721 3.279 10 H -0.204 1.204 11 H -0.226 1.226 12 H -0.190 1.190 13 N -0.310 5.310 14 C -0.059 4.059 15 C -0.101 4.101 16 C -0.191 4.191 17 C -0.072 4.072 18 N -0.318 5.318 19 C -0.072 4.072 20 C -0.192 4.192 21 H 0.082 0.918 22 H 0.052 0.948 23 H 0.056 0.944 24 H 0.075 0.925 25 H 0.062 0.938 26 H 0.074 0.926 27 H 0.150 0.850 28 H 0.077 0.923 29 H 0.048 0.952 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.155 0.845 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.406 6.817 -7.982 14.781 hybrid contribution 1.190 -0.610 1.845 2.279 sum -9.217 6.206 -6.138 12.694 Atomic orbital electron populations 1.21743 0.97614 0.99513 1.01266 1.21811 0.93814 0.99399 1.00319 1.19559 0.94268 0.90649 0.88162 0.95196 1.21744 0.90635 1.39160 1.06888 0.91096 1.25018 0.94796 0.95292 0.97967 1.69917 1.09177 1.45130 1.29405 0.86799 0.80652 0.79863 0.80583 1.20426 1.22612 1.18990 1.60767 1.54595 1.06577 1.09074 1.21804 0.98998 0.89655 0.95459 1.21180 0.99120 0.94190 0.95590 1.22290 0.98801 1.02044 0.96000 1.22017 1.01207 0.87429 0.96587 1.60715 1.13277 1.12707 1.45060 1.21995 0.95749 1.00085 0.89326 1.22287 1.01693 0.96503 0.98752 0.91769 0.94805 0.94385 0.92469 0.93794 0.92640 0.85010 0.92338 0.95205 0.90832 0.92247 0.90832 0.91118 0.91099 0.84452 0.91134 0.91176 0.91597 0.92108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.86 37.16 0.37 -2.31 16 2 C -0.12 -2.54 5.10 -26.73 -0.14 -2.67 16 3 C 0.18 4.27 1.56 -68.86 -0.11 4.16 16 4 H 0.03 0.74 6.75 -51.93 -0.35 0.39 16 5 C -0.55 -15.08 9.05 -34.44 -0.31 -15.39 16 6 H 0.07 2.13 7.97 -52.49 -0.42 1.71 16 7 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 8 N -0.90 -27.41 13.96 55.43 0.77 -26.63 16 9 Si 0.89 22.14 24.41 -169.99 -4.15 17.99 16 10 H -0.28 -6.73 6.83 56.52 0.39 -6.35 16 11 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 12 H -0.26 -6.35 6.53 56.52 0.37 -5.98 16 13 N -0.68 -13.49 5.60 -107.95 -0.60 -14.09 16 14 C 0.07 1.27 4.97 -3.82 -0.02 1.25 16 15 C -0.08 -1.15 2.46 -90.50 -0.22 -1.37 16 16 C -0.15 -2.03 5.08 -26.65 -0.14 -2.17 16 17 C 0.06 0.66 6.55 -3.83 -0.03 0.63 16 18 N -0.69 -7.73 6.87 -113.82 -0.78 -8.51 16 19 C 0.06 0.63 6.55 -3.83 -0.03 0.60 16 20 C -0.15 -1.85 5.36 -26.65 -0.14 -1.99 16 21 H 0.06 1.15 7.65 -51.93 -0.40 0.75 16 22 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 25 H 0.04 1.03 3.21 -51.93 -0.17 0.86 16 26 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 27 H 0.33 6.66 6.94 -39.29 -0.27 6.38 16 28 H 0.06 1.06 7.91 -51.93 -0.41 0.65 16 29 H 0.03 0.60 8.12 -51.93 -0.42 0.18 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 1.04 6.95 -51.93 -0.36 0.68 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.34 3.57 8.86 -39.29 -0.35 3.22 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 295.54 15.07 4.45 4.45 Total: -1.00 -28.94 295.54 -8.15 -37.09 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -6.98 Total: 7.00 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: -0.86 Total: -17.29 kcal Atomic # 7 Polarization: -48.63 SS G_CDS: -0.61 Total: -49.24 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.15 Total: 17.99 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.94 -8.15 -37.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086701083.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.499 kcal (2) G-P(sol) polarization free energy of solvation -28.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds