Wall clock time and date at job start Mon Mar 30 2020 03:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47140 * 2 1 4 4 H 1.08997 * 109.47404 * 54.42402 * 3 2 1 5 5 C 1.50703 * 109.47111 * 174.42572 * 3 2 1 6 6 H 1.07994 * 120.00291 * 119.99843 * 5 3 2 7 7 C 1.37877 * 119.99531 * 299.99456 * 5 3 2 8 8 N 1.31515 * 119.99875 * 180.02562 * 7 5 3 9 9 Si 1.86799 * 120.00210 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.47311 * 90.00027 * 9 7 5 11 11 H 1.48502 * 109.47114 * 209.99844 * 9 7 5 12 12 H 1.48500 * 109.47335 * 329.99943 * 9 7 5 13 13 N 1.46905 * 109.46940 * 294.41894 * 3 2 1 14 14 C 1.46902 * 110.99980 * 154.19062 * 13 3 2 15 15 C 1.52997 * 109.47198 * 185.69420 * 14 13 3 16 16 C 1.53119 * 109.52201 * 294.69006 * 15 14 13 17 17 C 1.53044 * 109.27580 * 182.44513 * 16 15 14 18 18 N 1.46839 * 109.52718 * 59.17234 * 17 16 15 19 19 C 1.46847 * 111.20256 * 298.26003 * 18 17 16 20 20 C 1.53041 * 109.52122 * 61.73804 * 19 18 17 21 21 H 1.08999 * 109.47231 * 55.36175 * 1 2 3 22 22 H 1.08996 * 109.47374 * 175.36147 * 1 2 3 23 23 H 1.09002 * 109.46979 * 295.35809 * 1 2 3 24 24 H 1.09001 * 109.46638 * 239.99518 * 2 1 3 25 25 H 1.08999 * 109.46590 * 119.99793 * 2 1 3 26 26 H 0.96996 * 120.00257 * 180.02562 * 8 7 5 27 27 H 1.00900 * 111.00012 * 278.14999 * 13 3 2 28 28 H 1.08999 * 109.47257 * 305.69722 * 14 13 3 29 29 H 1.09003 * 109.46811 * 65.69522 * 14 13 3 30 30 H 1.09002 * 109.52154 * 54.87276 * 15 14 13 31 31 H 1.09006 * 109.50013 * 302.37422 * 16 15 14 32 32 H 1.08992 * 109.50728 * 62.49601 * 16 15 14 33 33 H 1.09000 * 109.45863 * 299.15516 * 17 16 15 34 34 H 1.09000 * 109.45823 * 179.19625 * 17 16 15 35 35 H 1.00898 * 110.99877 * 62.36003 * 18 17 16 36 36 H 1.08999 * 109.45842 * 301.73122 * 19 18 17 37 37 H 1.08994 * 109.45532 * 181.75187 * 19 18 17 38 38 H 1.09002 * 109.50178 * 180.88271 * 20 19 18 39 39 H 1.09006 * 109.50281 * 60.76560 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5975 1.9843 0.8358 5 6 3.5407 1.4447 0.1380 6 1 4.1533 1.8866 -0.6338 7 6 4.1315 0.8826 1.2498 8 7 5.4411 0.8849 1.3705 9 14 3.0719 0.1176 2.5845 10 1 2.8539 -1.3196 2.2806 11 1 3.7568 0.2480 3.8957 12 1 1.7626 0.8162 2.6383 13 7 1.6634 2.0950 -1.2611 14 6 1.5642 3.5508 -1.0915 15 6 1.0346 4.1796 -2.3818 16 6 2.0551 3.9787 -3.5055 17 6 1.5476 4.6623 -4.7772 18 7 1.3518 6.0947 -4.5197 19 6 0.3412 6.3136 -3.4771 20 6 0.8127 5.6793 -2.1666 21 1 -0.3634 0.5841 -0.8455 22 1 -0.3634 -1.0242 -0.0831 23 1 -0.3633 0.4401 0.9287 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 5.8568 0.4891 2.1524 27 1 2.3119 1.8600 -1.9976 28 1 0.8825 3.7754 -0.2713 29 1 2.5499 3.9583 -0.8667 30 1 0.0913 3.7076 -2.6566 31 1 3.0094 4.4168 -3.2129 32 1 2.1854 2.9128 -3.6924 33 1 0.6001 4.2144 -5.0769 34 1 2.2786 4.5333 -5.5753 35 1 2.2237 6.5410 -4.2775 36 1 -0.6006 5.8578 -3.7828 37 1 0.1962 7.3839 -3.3310 38 1 0.0553 5.8283 -1.3969 39 1 1.7475 6.1441 -1.8529 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086701083.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:47 Heat of formation + Delta-G solvation = -40.887610 kcal Electronic energy + Delta-G solvation = -16390.256752 eV Core-core repulsion = 13944.633187 eV Total energy + Delta-G solvation = -2445.623564 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.04196 -38.04909 -34.94867 -33.95182 -31.94277 -31.57736 -28.91801 -26.25173 -24.30327 -23.75688 -22.59311 -21.64021 -20.95574 -19.13571 -17.14670 -16.95089 -16.34530 -15.67482 -15.53453 -15.24260 -15.04423 -14.55244 -14.50259 -14.25861 -13.69168 -13.57317 -13.21274 -13.09357 -12.94815 -12.57026 -12.37325 -12.26455 -12.11596 -11.88535 -11.57304 -11.45718 -11.29424 -11.21610 -11.13800 -10.71775 -9.30438 -9.09222 -8.37570 -6.42828 1.26735 1.31378 1.42329 2.26050 2.97860 3.38092 3.52353 3.82612 4.00592 4.07146 4.25459 4.35180 4.45277 4.48370 4.50102 4.59737 4.69876 4.70491 4.82835 4.91197 4.96901 5.01588 5.05279 5.11029 5.14064 5.17991 5.26006 5.32208 5.41759 5.46200 5.53914 5.62472 6.04771 6.11872 6.37731 6.48629 6.59579 6.76029 7.26367 8.78799 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.036121 B = 0.006619 C = 0.006185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.983489 B = 4229.422671 C = 4526.360405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.117 4.117 3 C 0.188 3.812 4 H 0.022 0.978 5 C -0.547 4.547 6 H 0.030 0.970 7 C 0.015 3.985 8 N -0.947 5.947 9 Si 0.952 3.048 10 H -0.264 1.264 11 H -0.299 1.299 12 H -0.248 1.248 13 N -0.667 5.667 14 C 0.073 3.927 15 C -0.072 4.072 16 C -0.149 4.149 17 C 0.065 3.935 18 N -0.691 5.691 19 C 0.063 3.937 20 C -0.148 4.148 21 H 0.070 0.930 22 H 0.058 0.942 23 H 0.040 0.960 24 H 0.054 0.946 25 H 0.032 0.968 26 H 0.266 0.734 27 H 0.331 0.669 28 H 0.058 0.942 29 H -0.001 1.001 30 H 0.078 0.922 31 H 0.043 0.957 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.342 0.658 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.958 6.963 -7.997 15.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.155 4.155 3 C 0.078 3.922 4 H 0.040 0.960 5 C -0.586 4.586 6 H 0.049 0.951 7 C -0.184 4.184 8 N -0.587 5.587 9 Si 0.779 3.221 10 H -0.190 1.190 11 H -0.227 1.227 12 H -0.172 1.172 13 N -0.296 5.296 14 C -0.057 4.057 15 C -0.091 4.091 16 C -0.188 4.188 17 C -0.065 4.065 18 N -0.319 5.319 19 C -0.067 4.067 20 C -0.187 4.187 21 H 0.089 0.911 22 H 0.077 0.923 23 H 0.060 0.940 24 H 0.073 0.927 25 H 0.050 0.950 26 H 0.075 0.925 27 H 0.148 0.852 28 H 0.076 0.924 29 H 0.018 0.982 30 H 0.097 0.903 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.160 0.840 36 H 0.094 0.906 37 H 0.105 0.895 38 H 0.092 0.908 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.962 6.908 -8.345 16.893 hybrid contribution 2.051 -0.571 1.884 2.843 sum -10.912 6.337 -6.461 14.176 Atomic orbital electron populations 1.21653 0.94473 1.01364 1.01745 1.21749 0.96582 0.97506 0.99650 1.19441 0.91129 0.92255 0.89382 0.96045 1.22065 0.92938 1.37915 1.05643 0.95122 1.25884 0.95907 0.96027 1.00546 1.70063 1.11202 1.46893 1.30500 0.85795 0.79405 0.79671 0.77226 1.19021 1.22727 1.17223 1.60811 1.53671 1.07663 1.07412 1.21876 0.97541 0.88495 0.97818 1.21085 0.99028 0.95430 0.93537 1.22254 0.98018 1.01537 0.96995 1.21967 1.01580 0.87454 0.95496 1.60740 1.13677 1.12259 1.45216 1.22016 0.95589 1.01026 0.88039 1.22259 1.01632 0.94774 1.00085 0.91122 0.92332 0.94049 0.92694 0.94982 0.92533 0.85211 0.92360 0.98241 0.90343 0.93793 0.91899 0.90586 0.90190 0.84040 0.90629 0.89475 0.90848 0.92946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.57 9.86 71.98 0.71 -3.86 16 2 C -0.12 -4.93 5.10 30.59 0.16 -4.77 16 3 C 0.19 8.72 1.56 44.17 0.07 8.79 16 4 H 0.02 1.05 6.75 -2.39 -0.02 1.03 16 5 C -0.55 -31.05 9.05 25.60 0.23 -30.82 16 6 H 0.03 1.93 7.97 -2.91 -0.02 1.91 16 7 C 0.01 0.85 5.45 84.65 0.46 1.31 16 8 N -0.95 -59.47 13.96 21.45 0.30 -59.17 16 9 Si 0.95 45.49 24.41 68.60 1.67 47.16 16 10 H -0.26 -12.01 6.83 99.48 0.68 -11.33 16 11 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 12 H -0.25 -11.09 6.53 99.48 0.65 -10.44 16 13 N -0.67 -26.29 5.60 -495.44 -2.77 -29.07 16 14 C 0.07 2.60 4.97 86.30 0.43 3.03 16 15 C -0.07 -1.95 2.46 -10.72 -0.03 -1.98 16 16 C -0.15 -3.91 5.08 30.65 0.16 -3.75 16 17 C 0.06 1.38 6.55 86.33 0.57 1.94 16 18 N -0.69 -14.02 6.87 -514.01 -3.53 -17.55 16 19 C 0.06 1.19 6.55 86.33 0.57 1.76 16 20 C -0.15 -3.34 5.36 30.65 0.16 -3.18 16 21 H 0.07 2.29 7.65 -2.39 -0.02 2.27 16 22 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 23 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 25 H 0.03 1.43 3.21 -2.39 -0.01 1.42 16 26 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 27 H 0.33 13.44 6.94 -89.69 -0.62 12.81 16 28 H 0.06 2.08 7.91 -2.39 -0.02 2.06 16 29 H 0.00 -0.03 8.12 -2.39 -0.02 -0.05 16 30 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 32 H 0.06 1.77 6.95 -2.39 -0.02 1.76 16 33 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.34 6.63 8.86 -89.70 -0.79 5.84 16 36 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.07 1.56 8.14 -2.39 -0.02 1.55 16 39 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 Total: -1.00 -62.88 295.54 -1.33 -64.21 By element: Atomic # 1 Polarization: 26.42 SS G_CDS: -0.49 Total: 25.93 kcal Atomic # 6 Polarization: -35.01 SS G_CDS: 3.48 Total: -31.53 kcal Atomic # 7 Polarization: -99.78 SS G_CDS: -6.00 Total: -105.78 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.67 Total: 47.16 kcal Total: -62.88 -1.33 -64.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086701083.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.324 kcal (2) G-P(sol) polarization free energy of solvation -62.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds