Wall clock time and date at job start Mon Mar 30 2020 03:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47373 * 2 1 4 4 H 1.09001 * 109.47598 * 175.22800 * 3 2 1 5 5 C 1.50693 * 109.47344 * 55.22135 * 3 2 1 6 6 H 1.07997 * 120.00405 * 245.73011 * 5 3 2 7 7 C 1.37879 * 119.99806 * 65.72257 * 5 3 2 8 8 N 1.31511 * 120.00142 * 5.52007 * 7 5 3 9 9 Si 1.86804 * 120.00155 * 185.51357 * 7 5 3 10 10 H 1.48493 * 109.47364 * 180.02562 * 9 7 5 11 11 H 1.48498 * 109.47488 * 300.00932 * 9 7 5 12 12 H 1.48507 * 109.46518 * 60.00464 * 9 7 5 13 13 N 1.46901 * 109.47073 * 295.22173 * 3 2 1 14 14 C 1.46896 * 111.00214 * 279.79901 * 13 3 2 15 15 C 1.53003 * 109.47212 * 184.97952 * 14 13 3 16 16 C 1.53119 * 109.52449 * 294.68061 * 15 14 13 17 17 C 1.53038 * 109.27756 * 182.43842 * 16 15 14 18 18 N 1.46853 * 109.52182 * 59.18111 * 17 16 15 19 19 C 1.46846 * 111.19547 * 298.25734 * 18 17 16 20 20 C 1.53029 * 109.52750 * 61.74470 * 19 18 17 21 21 H 1.08995 * 109.46838 * 64.94720 * 1 2 3 22 22 H 1.08997 * 109.47011 * 184.95206 * 1 2 3 23 23 H 1.09004 * 109.46832 * 304.94887 * 1 2 3 24 24 H 1.09004 * 109.46827 * 239.99872 * 2 1 3 25 25 H 1.08999 * 109.47380 * 119.99879 * 2 1 3 26 26 H 0.96996 * 119.99764 * 355.15196 * 8 7 5 27 27 H 1.00895 * 111.00051 * 155.83653 * 13 3 2 28 28 H 1.09003 * 109.46828 * 304.98084 * 14 13 3 29 29 H 1.09000 * 109.47335 * 64.98177 * 14 13 3 30 30 H 1.09001 * 109.52199 * 54.87635 * 15 14 13 31 31 H 1.08997 * 109.50023 * 302.38125 * 16 15 14 32 32 H 1.08998 * 109.49994 * 62.49836 * 16 15 14 33 33 H 1.08999 * 109.46113 * 299.16808 * 17 16 15 34 34 H 1.08994 * 109.45960 * 179.19597 * 17 16 15 35 35 H 1.00902 * 110.99873 * 62.35282 * 18 17 16 36 36 H 1.09001 * 109.46397 * 301.72155 * 19 18 17 37 37 H 1.09007 * 109.44613 * 181.75668 * 19 18 17 38 38 H 1.09003 * 109.50500 * 180.87663 * 20 19 18 39 39 H 1.08996 * 109.50812 * 60.75719 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1267 1.4437 0.0855 5 6 1.4435 2.1863 1.1669 6 1 0.7592 3.0036 0.9935 7 6 1.7712 1.8232 2.4561 8 7 2.6853 0.9017 2.6675 9 14 0.9167 2.6403 3.9024 10 1 1.4447 2.0780 5.1713 11 1 1.1712 4.1029 3.8659 12 1 -0.5447 2.3899 3.8196 13 7 1.6469 2.1009 -1.2530 14 6 2.5540 1.7329 -2.3482 15 6 2.1897 2.5306 -3.6020 16 6 0.7962 2.1180 -4.0842 17 6 0.4627 2.8744 -5.3721 18 7 1.4670 2.5641 -6.3976 19 6 2.8064 2.9944 -5.9765 20 6 3.2099 2.2416 -4.7068 21 1 -0.3633 0.4352 -0.9310 22 1 -0.3633 -1.0238 0.0887 23 1 -0.3633 0.5887 0.8424 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.0785 0.4277 1.9181 27 1 1.6064 3.1024 -1.1379 28 1 3.5810 1.9574 -2.0603 29 1 2.4595 0.6670 -2.5557 30 1 2.1956 3.5957 -3.3705 31 1 0.7810 1.0455 -4.2777 32 1 0.0596 2.3607 -3.3184 33 1 0.4647 3.9464 -5.1745 34 1 -0.5229 2.5723 -5.7258 35 1 1.4582 1.5814 -6.6265 36 1 2.7973 4.0658 -5.7762 37 1 3.5227 2.7793 -6.7695 38 1 4.1976 2.5726 -4.3858 39 1 3.2325 1.1710 -4.9100 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086701086.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:49 Heat of formation + Delta-G solvation = -46.821581 kcal Electronic energy + Delta-G solvation = -16406.216895 eV Core-core repulsion = 13960.336015 eV Total energy + Delta-G solvation = -2445.880881 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.07864 -38.23020 -35.22410 -33.24092 -31.85352 -31.60590 -28.09472 -25.97777 -25.32122 -23.74479 -22.83815 -21.19933 -21.10529 -18.95640 -17.09019 -16.27774 -16.02158 -15.79833 -15.57477 -15.49361 -15.15103 -15.00381 -14.23563 -14.10093 -13.57695 -13.44455 -13.18906 -12.95315 -12.70883 -12.58984 -12.23190 -12.14277 -11.98148 -11.96045 -11.72005 -11.58671 -11.45593 -11.23207 -10.59828 -10.40689 -9.29499 -9.13864 -8.57356 -6.29844 1.53760 1.61042 1.79706 2.57018 3.22024 3.36620 3.48344 3.70686 4.00295 4.04240 4.23567 4.32455 4.43339 4.46744 4.48080 4.51302 4.64180 4.73859 4.77326 4.88418 4.94272 4.99470 5.00217 5.09343 5.14955 5.18786 5.34117 5.35916 5.43426 5.49536 5.67236 5.88743 6.08754 6.09544 6.48036 6.49984 6.61133 6.80441 7.50095 8.79321 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.044313 B = 0.005794 C = 0.005774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.713005 B = 4831.251371 C = 4847.775535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.101 4.101 3 C 0.207 3.793 4 H -0.049 1.049 5 C -0.593 4.593 6 H 0.051 0.949 7 C -0.026 4.026 8 N -0.939 5.939 9 Si 1.111 2.889 10 H -0.288 1.288 11 H -0.273 1.273 12 H -0.271 1.271 13 N -0.668 5.668 14 C 0.068 3.932 15 C -0.076 4.076 16 C -0.133 4.133 17 C 0.061 3.939 18 N -0.689 5.689 19 C 0.063 3.937 20 C -0.146 4.146 21 H 0.055 0.945 22 H 0.038 0.962 23 H 0.040 0.960 24 H 0.032 0.968 25 H 0.030 0.970 26 H 0.258 0.742 27 H 0.331 0.669 28 H 0.001 0.999 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.345 0.655 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.064 0.936 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.362 2.711 -15.131 15.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.139 4.139 3 C 0.098 3.902 4 H -0.031 1.031 5 C -0.632 4.632 6 H 0.069 0.931 7 C -0.225 4.225 8 N -0.577 5.577 9 Si 0.934 3.066 10 H -0.214 1.214 11 H -0.198 1.198 12 H -0.196 1.196 13 N -0.297 5.297 14 C -0.061 4.061 15 C -0.094 4.094 16 C -0.172 4.172 17 C -0.069 4.069 18 N -0.318 5.318 19 C -0.067 4.067 20 C -0.186 4.186 21 H 0.074 0.926 22 H 0.057 0.943 23 H 0.059 0.941 24 H 0.051 0.949 25 H 0.049 0.951 26 H 0.069 0.931 27 H 0.148 0.852 28 H 0.020 0.980 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.163 0.837 36 H 0.088 0.912 37 H 0.107 0.893 38 H 0.083 0.917 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.986 2.884 -14.038 14.639 hybrid contribution 1.485 -0.554 -0.294 1.612 sum -1.500 2.330 -14.331 14.597 Atomic orbital electron populations 1.21315 0.94864 0.98894 1.01445 1.21397 0.97646 0.97369 0.97525 1.19096 0.90560 0.92609 0.87958 1.03147 1.22185 1.29888 1.18414 0.92684 0.93082 1.27058 0.95386 0.96852 1.03188 1.70911 1.25930 1.25627 1.35230 0.82997 0.75559 0.75432 0.72635 1.21372 1.19834 1.19613 1.60520 1.51358 1.12712 1.05154 1.22007 0.92640 0.99448 0.92046 1.21113 0.96093 0.98910 0.93332 1.22077 0.96401 0.99905 0.98836 1.22013 0.95829 0.99942 0.89087 1.60726 1.05345 1.24310 1.41387 1.21996 0.90387 0.99437 0.94868 1.22251 0.98680 1.01150 0.96523 0.92596 0.94267 0.94063 0.94912 0.95136 0.93117 0.85235 0.98034 0.92722 0.91965 0.92812 0.91828 0.91356 0.89891 0.83725 0.91244 0.89305 0.91677 0.91931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.70 9.53 71.98 0.69 -4.01 16 2 C -0.10 -4.81 5.47 30.59 0.17 -4.65 16 3 C 0.21 10.43 1.92 44.17 0.08 10.51 16 4 H -0.05 -2.79 7.31 -2.39 -0.02 -2.81 16 5 C -0.59 -32.46 6.92 25.60 0.18 -32.29 16 6 H 0.05 2.77 7.75 -2.91 -0.02 2.75 16 7 C -0.03 -1.48 5.28 84.66 0.45 -1.03 16 8 N -0.94 -56.96 13.20 21.45 0.28 -56.68 16 9 Si 1.11 49.91 29.91 68.60 2.05 51.96 16 10 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 11 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 12 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 13 N -0.67 -27.67 5.38 -495.46 -2.66 -30.33 16 14 C 0.07 2.40 4.90 86.30 0.42 2.83 16 15 C -0.08 -2.04 2.35 -10.71 -0.03 -2.06 16 16 C -0.13 -3.34 5.22 30.65 0.16 -3.18 16 17 C 0.06 1.26 6.55 86.32 0.57 1.82 16 18 N -0.69 -13.23 6.87 -514.00 -3.53 -16.76 16 19 C 0.06 1.17 6.55 86.32 0.57 1.74 16 20 C -0.15 -3.21 5.36 30.65 0.16 -3.04 16 21 H 0.05 2.28 7.89 -2.39 -0.02 2.26 16 22 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 23 H 0.04 1.96 6.89 -2.39 -0.02 1.95 16 24 H 0.03 1.44 7.13 -2.38 -0.02 1.42 16 25 H 0.03 1.60 6.18 -2.39 -0.01 1.59 16 26 H 0.26 15.90 5.62 -92.71 -0.52 15.38 16 27 H 0.33 13.75 8.29 -89.70 -0.74 13.01 16 28 H 0.00 0.06 7.95 -2.39 -0.02 0.04 16 29 H 0.05 1.98 7.20 -2.39 -0.02 1.96 16 30 H 0.06 1.74 8.12 -2.39 -0.02 1.72 16 31 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.06 1.84 7.84 -2.39 -0.02 1.83 16 33 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.34 5.94 8.86 -89.69 -0.79 5.14 16 36 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 38 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -60.77 298.92 -0.72 -61.49 By element: Atomic # 1 Polarization: 23.96 SS G_CDS: -0.28 Total: 23.68 kcal Atomic # 6 Polarization: -36.78 SS G_CDS: 3.42 Total: -33.37 kcal Atomic # 7 Polarization: -97.85 SS G_CDS: -5.91 Total: -103.76 kcal Atomic # 14 Polarization: 49.91 SS G_CDS: 2.05 Total: 51.96 kcal Total: -60.77 -0.72 -61.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086701086.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.671 kcal (2) G-P(sol) polarization free energy of solvation -60.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds