Wall clock time and date at job start Mon Mar 30 2020 03:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47087 * 2 1 4 4 H 1.09003 * 109.46616 * 54.48917 * 3 2 1 5 5 C 1.50694 * 109.47078 * 174.49132 * 3 2 1 6 6 H 1.08000 * 120.00188 * 120.00144 * 5 3 2 7 7 C 1.37877 * 120.00128 * 299.99866 * 5 3 2 8 8 N 1.31517 * 120.00012 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00296 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47255 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47605 * 120.00049 * 9 7 5 12 12 H 1.48498 * 109.47332 * 240.00356 * 9 7 5 13 13 N 1.46897 * 109.47087 * 294.49012 * 3 2 1 14 14 C 1.46903 * 110.99905 * 152.94982 * 13 3 2 15 15 C 1.52995 * 109.47221 * 273.64807 * 14 13 3 16 16 C 1.53001 * 109.47157 * 179.97438 * 15 14 13 17 17 C 1.52996 * 109.47277 * 59.99822 * 16 15 14 18 18 N 1.46903 * 109.47003 * 60.00049 * 17 16 15 19 19 C 1.52999 * 109.47174 * 300.00544 * 17 16 15 20 20 C 1.52997 * 109.46889 * 153.64685 * 14 13 3 21 21 H 1.09001 * 109.46687 * 180.72854 * 1 2 3 22 22 H 1.08996 * 109.46986 * 60.72871 * 1 2 3 23 23 H 1.08996 * 109.46950 * 300.72615 * 1 2 3 24 24 H 1.08999 * 109.47269 * 119.99937 * 2 1 3 25 25 H 1.09000 * 109.47257 * 240.00331 * 2 1 3 26 26 H 0.97005 * 120.00312 * 179.97438 * 8 7 5 27 27 H 1.00906 * 111.00132 * 29.00198 * 13 3 2 28 28 H 1.08996 * 109.46942 * 33.64727 * 14 13 3 29 29 H 1.08999 * 109.47509 * 300.00123 * 15 14 13 30 30 H 1.09004 * 109.47326 * 59.99803 * 15 14 13 31 31 H 1.09003 * 109.47349 * 299.99753 * 16 15 14 32 32 H 1.08999 * 109.47355 * 179.97438 * 16 15 14 33 33 H 1.09002 * 109.47549 * 180.02562 * 17 16 15 34 34 H 1.00903 * 110.99942 * 60.00355 * 18 17 16 35 35 H 1.00904 * 111.00137 * 183.95766 * 18 17 16 36 36 H 1.09006 * 109.46894 * 299.99177 * 19 17 16 37 37 H 1.09004 * 109.47327 * 179.97438 * 19 17 16 38 38 H 1.08999 * 109.47137 * 300.00231 * 20 14 13 39 39 H 1.08996 * 109.47294 * 60.00257 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5983 1.9840 0.8366 5 6 3.5408 1.4447 0.1364 6 1 4.1526 1.8870 -0.6359 7 6 4.1329 0.8821 1.2472 8 7 3.3880 0.3431 2.1875 9 14 5.9932 0.8855 1.4166 10 1 6.5969 1.5480 0.2327 11 1 6.3770 1.6245 2.6461 12 1 6.4846 -0.5130 1.5060 13 7 1.6619 2.0956 -1.2604 14 6 1.5343 3.5482 -1.0830 15 6 0.1212 3.8808 -0.5999 16 6 -0.0115 5.3938 -0.4146 17 6 0.2499 6.0959 -1.7485 18 7 -0.7284 5.6368 -2.7435 19 6 1.6630 5.7632 -2.2316 20 6 1.7955 4.2498 -2.4173 21 1 -0.3633 -1.0276 0.0131 22 1 -0.3633 0.5025 -0.8964 23 1 -0.3633 0.5251 0.8834 24 1 1.8934 -0.5138 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 3.8045 -0.0531 2.9689 27 1 0.8107 1.7005 -1.6312 28 1 2.2602 3.8893 -0.3449 29 1 -0.6048 3.5398 -1.3379 30 1 -0.0649 3.3810 0.3507 31 1 0.7144 5.7345 0.3238 32 1 -1.0183 5.6308 -0.0708 33 1 0.1558 7.1738 -1.6164 34 1 -1.6703 5.8451 -2.4474 35 1 -0.5375 6.0370 -3.6499 36 1 2.3890 6.1040 -1.4934 37 1 1.8491 6.2631 -3.1822 38 1 2.8022 4.0128 -2.7614 39 1 1.0696 3.9088 -3.1553 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086729852.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:30 Heat of formation + Delta-G solvation = -24.079379 kcal Electronic energy + Delta-G solvation = -16711.232889 eV Core-core repulsion = 14266.338184 eV Total energy + Delta-G solvation = -2444.894705 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.74828 -35.90320 -33.05307 -31.58062 -30.34673 -29.93159 -27.26658 -25.53616 -22.73154 -22.21378 -20.77873 -19.55724 -18.67780 -16.10351 -15.67039 -15.50530 -14.86707 -14.68464 -13.90906 -13.44334 -13.21506 -12.93663 -12.61207 -12.12338 -12.02783 -11.72738 -11.54727 -11.37473 -11.06004 -10.81254 -10.62740 -10.54400 -10.51468 -9.95512 -9.86522 -9.79350 -9.57395 -9.25346 -8.93059 -8.51621 -8.27140 -7.00625 -5.88714 -3.92118 3.35544 3.43339 3.49087 4.51176 4.58625 4.99916 5.07550 5.23996 5.39254 5.52721 5.67963 5.78550 5.91015 5.93523 6.00505 6.19526 6.25337 6.25768 6.30597 6.40052 6.48619 6.52568 6.70072 6.72642 6.93828 6.94733 7.07762 7.20767 7.22812 7.31325 7.50158 7.65499 7.88458 8.03217 8.47927 8.54141 8.93164 9.17343 9.72720 11.16440 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.029239 B = 0.007921 C = 0.006868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.400161 B = 3534.244007 C = 4076.029796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.127 4.127 3 C 0.219 3.781 4 H 0.002 0.998 5 C -0.488 4.488 6 H 0.061 0.939 7 C 0.053 3.947 8 N -0.898 5.898 9 Si 0.892 3.108 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.286 1.286 13 N -0.683 5.683 14 C 0.099 3.901 15 C -0.136 4.136 16 C -0.107 4.107 17 C 0.093 3.907 18 N -0.838 5.838 19 C -0.112 4.112 20 C -0.095 4.095 21 H 0.035 0.965 22 H 0.036 0.964 23 H 0.041 0.959 24 H 0.098 0.902 25 H 0.039 0.961 26 H 0.257 0.743 27 H 0.317 0.683 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.050 0.950 33 H 0.025 0.975 34 H 0.335 0.665 35 H 0.336 0.664 36 H 0.063 0.937 37 H 0.052 0.948 38 H 0.058 0.942 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.351 9.249 -6.529 13.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.165 4.165 3 C 0.111 3.889 4 H 0.020 0.980 5 C -0.527 4.527 6 H 0.079 0.921 7 C -0.147 4.147 8 N -0.538 5.538 9 Si 0.721 3.279 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.212 1.212 13 N -0.312 5.312 14 C -0.012 4.012 15 C -0.175 4.175 16 C -0.146 4.146 17 C -0.018 4.018 18 N -0.368 5.368 19 C -0.151 4.151 20 C -0.134 4.134 21 H 0.054 0.946 22 H 0.055 0.945 23 H 0.060 0.940 24 H 0.116 0.884 25 H 0.058 0.942 26 H 0.067 0.933 27 H 0.134 0.866 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.043 0.957 34 H 0.147 0.853 35 H 0.148 0.852 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.362 8.442 -6.422 12.369 hybrid contribution -0.156 1.057 0.700 1.277 sum -6.518 9.498 -5.722 12.863 Atomic orbital electron populations 1.21873 0.99651 0.99406 0.99687 1.21779 0.91210 1.00653 1.02890 1.19139 0.95138 0.89783 0.84796 0.98049 1.21306 0.91522 1.35804 1.04025 0.92102 1.24963 0.97927 0.95860 0.95956 1.69891 1.34449 1.39862 1.09648 0.86530 0.86111 0.77529 0.77762 1.19821 1.21352 1.21205 1.60764 1.37070 1.01654 1.31751 1.21389 0.94118 0.89730 0.95926 1.22145 0.99826 0.94580 1.00959 1.21499 1.00494 0.97023 0.95576 1.21320 0.92924 0.94975 0.92601 1.58678 1.05479 1.67537 1.05126 1.21594 0.95000 0.98260 1.00233 1.21368 1.01370 0.92269 0.98350 0.94587 0.94502 0.93999 0.88412 0.94205 0.93289 0.86559 0.90987 0.91394 0.92968 0.91857 0.93123 0.95738 0.85301 0.85180 0.91832 0.92890 0.92335 0.91572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 9.74 37.16 0.36 -2.61 16 2 C -0.13 -3.07 5.35 -26.73 -0.14 -3.21 16 3 C 0.22 5.54 1.82 -68.87 -0.13 5.41 16 4 H 0.00 0.05 7.22 -51.93 -0.37 -0.32 16 5 C -0.49 -13.73 8.61 -34.44 -0.30 -14.02 16 6 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 7 C 0.05 1.48 5.29 -17.82 -0.09 1.39 16 8 N -0.90 -25.99 11.29 55.43 0.63 -25.36 16 9 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 10 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 13 N -0.68 -14.87 6.05 -100.96 -0.61 -15.48 16 14 C 0.10 1.90 2.26 -67.71 -0.15 1.75 16 15 C -0.14 -2.29 5.00 -26.73 -0.13 -2.42 16 16 C -0.11 -1.50 5.61 -26.73 -0.15 -1.65 16 17 C 0.09 1.14 3.57 -67.71 -0.24 0.90 16 18 N -0.84 -9.20 7.72 -4.67 -0.04 -9.24 16 19 C -0.11 -1.52 5.57 -26.70 -0.15 -1.67 16 20 C -0.10 -1.58 5.37 -26.71 -0.14 -1.72 16 21 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.04 0.67 6.48 -51.93 -0.34 0.33 16 23 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.10 2.65 5.94 -51.93 -0.31 2.34 16 25 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 27 H 0.32 6.47 6.22 -39.29 -0.24 6.23 16 28 H 0.07 1.58 7.70 -51.93 -0.40 1.19 16 29 H 0.07 1.13 7.59 -51.93 -0.39 0.74 16 30 H 0.05 0.98 7.56 -51.93 -0.39 0.58 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.33 3.19 9.04 -39.29 -0.36 2.83 16 35 H 0.34 3.17 8.99 -39.29 -0.35 2.82 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.07 1.09 7.61 -51.93 -0.39 0.70 16 LS Contribution 297.86 15.07 4.49 4.49 Total: -1.00 -28.69 297.86 -8.73 -37.42 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -6.90 Total: 9.17 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: -1.27 Total: -17.86 kcal Atomic # 7 Polarization: -50.06 SS G_CDS: -0.02 Total: -50.08 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -28.69 -8.73 -37.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086729852.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.339 kcal (2) G-P(sol) polarization free energy of solvation -28.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds