Wall clock time and date at job start Mon Mar 30 2020 03:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47087 * 2 1 4 4 H 1.09003 * 109.46616 * 54.48917 * 3 2 1 5 5 C 1.50694 * 109.47078 * 174.49132 * 3 2 1 6 6 H 1.08000 * 120.00188 * 120.00144 * 5 3 2 7 7 C 1.37877 * 120.00128 * 299.99866 * 5 3 2 8 8 N 1.31517 * 120.00012 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00296 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47255 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47605 * 120.00049 * 9 7 5 12 12 H 1.48498 * 109.47332 * 240.00356 * 9 7 5 13 13 N 1.46897 * 109.47087 * 294.49012 * 3 2 1 14 14 C 1.46903 * 110.99905 * 152.94982 * 13 3 2 15 15 C 1.52995 * 109.47221 * 273.64807 * 14 13 3 16 16 C 1.53001 * 109.47157 * 179.97438 * 15 14 13 17 17 C 1.52996 * 109.47277 * 59.99822 * 16 15 14 18 18 N 1.46903 * 109.47003 * 60.00049 * 17 16 15 19 19 C 1.52999 * 109.47174 * 300.00544 * 17 16 15 20 20 C 1.52997 * 109.46889 * 153.64685 * 14 13 3 21 21 H 1.09001 * 109.46687 * 180.72854 * 1 2 3 22 22 H 1.08996 * 109.46986 * 60.72871 * 1 2 3 23 23 H 1.08996 * 109.46950 * 300.72615 * 1 2 3 24 24 H 1.08999 * 109.47269 * 119.99937 * 2 1 3 25 25 H 1.09000 * 109.47257 * 240.00331 * 2 1 3 26 26 H 0.97005 * 120.00312 * 179.97438 * 8 7 5 27 27 H 1.00906 * 111.00132 * 29.00198 * 13 3 2 28 28 H 1.08996 * 109.46942 * 33.64727 * 14 13 3 29 29 H 1.08999 * 109.47509 * 300.00123 * 15 14 13 30 30 H 1.09004 * 109.47326 * 59.99803 * 15 14 13 31 31 H 1.09003 * 109.47349 * 299.99753 * 16 15 14 32 32 H 1.08999 * 109.47355 * 179.97438 * 16 15 14 33 33 H 1.09002 * 109.47549 * 180.02562 * 17 16 15 34 34 H 1.00903 * 110.99942 * 60.00355 * 18 17 16 35 35 H 1.00904 * 111.00137 * 183.95766 * 18 17 16 36 36 H 1.09006 * 109.46894 * 299.99177 * 19 17 16 37 37 H 1.09004 * 109.47327 * 179.97438 * 19 17 16 38 38 H 1.08999 * 109.47137 * 300.00231 * 20 14 13 39 39 H 1.08996 * 109.47294 * 60.00257 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5983 1.9840 0.8366 5 6 3.5408 1.4447 0.1364 6 1 4.1526 1.8870 -0.6359 7 6 4.1329 0.8821 1.2472 8 7 3.3880 0.3431 2.1875 9 14 5.9932 0.8855 1.4166 10 1 6.5969 1.5480 0.2327 11 1 6.3770 1.6245 2.6461 12 1 6.4846 -0.5130 1.5060 13 7 1.6619 2.0956 -1.2604 14 6 1.5343 3.5482 -1.0830 15 6 0.1212 3.8808 -0.5999 16 6 -0.0115 5.3938 -0.4146 17 6 0.2499 6.0959 -1.7485 18 7 -0.7284 5.6368 -2.7435 19 6 1.6630 5.7632 -2.2316 20 6 1.7955 4.2498 -2.4173 21 1 -0.3633 -1.0276 0.0131 22 1 -0.3633 0.5025 -0.8964 23 1 -0.3633 0.5251 0.8834 24 1 1.8934 -0.5138 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 3.8045 -0.0531 2.9689 27 1 0.8107 1.7005 -1.6312 28 1 2.2602 3.8893 -0.3449 29 1 -0.6048 3.5398 -1.3379 30 1 -0.0649 3.3810 0.3507 31 1 0.7144 5.7345 0.3238 32 1 -1.0183 5.6308 -0.0708 33 1 0.1558 7.1738 -1.6164 34 1 -1.6703 5.8451 -2.4474 35 1 -0.5375 6.0370 -3.6499 36 1 2.3890 6.1040 -1.4934 37 1 1.8491 6.2631 -3.1822 38 1 2.8022 4.0128 -2.7614 39 1 1.0696 3.9088 -3.1553 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086729852.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:29 Heat of formation + Delta-G solvation = -43.913232 kcal Electronic energy + Delta-G solvation = -16712.092949 eV Core-core repulsion = 14266.338184 eV Total energy + Delta-G solvation = -2445.754765 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.08432 -37.59977 -34.71892 -33.43831 -31.59885 -31.34559 -28.93063 -27.26789 -24.61950 -23.49202 -22.17717 -21.48048 -19.96390 -18.27872 -16.88143 -16.70425 -16.59683 -16.02820 -15.70093 -15.01020 -14.61676 -14.44481 -14.35070 -13.70258 -13.42781 -13.16826 -13.04261 -12.96398 -12.77171 -12.59293 -12.43827 -12.02251 -11.90128 -11.84642 -11.58500 -11.52200 -11.22190 -10.88728 -10.80748 -10.42086 -9.38004 -8.83263 -8.04922 -6.17135 1.38929 1.40663 1.53049 2.44312 3.18991 3.58592 3.80803 3.92139 3.97532 4.26147 4.41525 4.49397 4.51885 4.58380 4.63947 4.72495 4.74286 4.75389 4.90679 5.06522 5.10785 5.14926 5.18775 5.26568 5.35117 5.37698 5.43688 5.54840 5.63039 5.68337 5.80873 5.94716 6.39425 6.41213 6.63631 6.77839 6.98994 7.11095 7.52369 8.97850 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.029239 B = 0.007921 C = 0.006868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.400161 B = 3534.244007 C = 4076.029796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.123 4.123 3 C 0.229 3.771 4 H -0.033 1.033 5 C -0.509 4.509 6 H 0.046 0.954 7 C 0.007 3.993 8 N -0.921 5.921 9 Si 0.954 3.046 10 H -0.272 1.272 11 H -0.281 1.281 12 H -0.279 1.279 13 N -0.686 5.686 14 C 0.099 3.901 15 C -0.124 4.124 16 C -0.106 4.106 17 C 0.101 3.899 18 N -0.845 5.845 19 C -0.110 4.110 20 C -0.085 4.085 21 H 0.057 0.943 22 H 0.056 0.944 23 H 0.034 0.966 24 H 0.066 0.934 25 H 0.035 0.965 26 H 0.259 0.741 27 H 0.326 0.674 28 H 0.034 0.966 29 H 0.076 0.924 30 H 0.025 0.975 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.047 0.953 34 H 0.346 0.654 35 H 0.348 0.652 36 H 0.056 0.944 37 H 0.076 0.924 38 H 0.039 0.961 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.118 10.327 -7.720 15.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.161 4.161 3 C 0.120 3.880 4 H -0.015 1.015 5 C -0.548 4.548 6 H 0.064 0.936 7 C -0.190 4.190 8 N -0.562 5.562 9 Si 0.781 3.219 10 H -0.196 1.196 11 H -0.207 1.207 12 H -0.204 1.204 13 N -0.316 5.316 14 C -0.012 4.012 15 C -0.163 4.163 16 C -0.145 4.145 17 C -0.010 4.010 18 N -0.377 5.377 19 C -0.148 4.148 20 C -0.124 4.124 21 H 0.076 0.924 22 H 0.075 0.925 23 H 0.053 0.947 24 H 0.085 0.915 25 H 0.053 0.947 26 H 0.069 0.931 27 H 0.144 0.856 28 H 0.052 0.948 29 H 0.095 0.905 30 H 0.044 0.956 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.065 0.935 34 H 0.159 0.841 35 H 0.162 0.838 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.058 0.942 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.147 9.533 -7.631 14.149 hybrid contribution 0.075 0.720 1.064 1.287 sum -7.072 10.253 -6.567 14.081 Atomic orbital electron populations 1.21725 0.96283 1.01063 1.00305 1.21614 0.94245 0.99265 1.01019 1.18867 0.93631 0.90394 0.85080 1.01520 1.21545 0.93102 1.36138 1.04028 0.93593 1.25691 1.02291 0.95437 0.95599 1.70016 1.36099 1.40112 1.09940 0.85558 0.80870 0.77762 0.77748 1.19637 1.20696 1.20431 1.60702 1.37787 1.03214 1.29902 1.21413 0.94746 0.88259 0.96761 1.21968 0.98018 0.96804 0.99536 1.21498 1.01404 0.94732 0.96880 1.21176 0.92279 0.95910 0.91682 1.58590 1.05845 1.67885 1.05429 1.21582 0.96048 0.95793 1.01416 1.21251 1.00336 0.94383 0.96401 0.92353 0.92548 0.94676 0.91522 0.94668 0.93136 0.85585 0.94767 0.90546 0.95621 0.92833 0.91206 0.93479 0.84055 0.83841 0.92565 0.90500 0.94223 0.90943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.36 9.74 71.98 0.70 -4.66 16 2 C -0.12 -6.05 5.35 30.60 0.16 -5.88 16 3 C 0.23 11.97 1.82 44.17 0.08 12.05 16 4 H -0.03 -1.91 7.22 -2.39 -0.02 -1.93 16 5 C -0.51 -29.63 8.61 25.60 0.22 -29.41 16 6 H 0.05 2.74 7.81 -2.91 -0.02 2.72 16 7 C 0.01 0.43 5.29 84.65 0.45 0.88 16 8 N -0.92 -54.59 11.29 21.45 0.24 -54.34 16 9 Si 0.95 45.59 29.54 68.60 2.03 47.62 16 10 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 11 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 12 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 13 N -0.69 -30.42 6.05 -473.32 -2.87 -33.28 16 14 C 0.10 3.85 2.26 44.91 0.10 3.95 16 15 C -0.12 -4.15 5.00 30.59 0.15 -3.99 16 16 C -0.11 -2.82 5.61 30.59 0.17 -2.65 16 17 C 0.10 2.19 3.57 44.91 0.16 2.36 16 18 N -0.85 -15.70 7.72 -168.68 -1.30 -17.00 16 19 C -0.11 -2.77 5.57 30.61 0.17 -2.60 16 20 C -0.09 -2.77 5.37 30.61 0.16 -2.60 16 21 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 22 H 0.06 1.98 6.48 -2.39 -0.02 1.96 16 23 H 0.03 1.40 8.14 -2.39 -0.02 1.39 16 24 H 0.07 3.71 5.94 -2.39 -0.01 3.70 16 25 H 0.03 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.26 14.59 8.31 -92.70 -0.77 13.82 16 27 H 0.33 13.21 6.22 -89.69 -0.56 12.65 16 28 H 0.03 1.58 7.70 -2.39 -0.02 1.56 16 29 H 0.08 2.42 7.59 -2.39 -0.02 2.40 16 30 H 0.02 0.97 7.56 -2.39 -0.02 0.95 16 31 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.35 5.32 9.04 -89.69 -0.81 4.51 16 35 H 0.35 5.26 8.99 -89.69 -0.81 4.45 16 36 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 37 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.07 2.26 7.61 -2.39 -0.02 2.24 16 Total: -1.00 -63.24 297.86 -0.51 -63.75 By element: Atomic # 1 Polarization: 26.96 SS G_CDS: -1.14 Total: 25.82 kcal Atomic # 6 Polarization: -35.10 SS G_CDS: 2.54 Total: -32.56 kcal Atomic # 7 Polarization: -100.70 SS G_CDS: -3.93 Total: -104.62 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -63.24 -0.51 -63.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086729852.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.837 kcal (2) G-P(sol) polarization free energy of solvation -63.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds