Wall clock time and date at job start Mon Mar 30 2020 03:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47268 * 2 1 4 4 H 1.08997 * 109.46890 * 303.99737 * 3 2 1 5 5 C 1.50696 * 109.47092 * 184.00026 * 3 2 1 6 6 H 1.08000 * 120.00204 * 239.99770 * 5 3 2 7 7 C 1.37888 * 120.00007 * 59.99933 * 5 3 2 8 8 N 1.31511 * 119.99875 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 119.99988 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47339 * 59.99872 * 9 7 5 11 11 H 1.48500 * 109.47064 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47465 * 299.99912 * 9 7 5 13 13 N 1.46895 * 109.47176 * 64.00039 * 3 2 1 14 14 C 1.46907 * 110.99952 * 203.92070 * 13 3 2 15 15 C 1.53008 * 109.46818 * 85.45012 * 14 13 3 16 16 C 1.52995 * 109.47148 * 180.02562 * 15 14 13 17 17 C 1.53002 * 109.46915 * 300.00058 * 16 15 14 18 18 N 1.46907 * 109.46775 * 180.02562 * 17 16 15 19 19 C 1.52998 * 109.47389 * 59.99961 * 17 16 15 20 20 C 1.52993 * 109.47340 * 205.44667 * 14 13 3 21 21 H 1.09000 * 109.47227 * 174.92681 * 1 2 3 22 22 H 1.09002 * 109.47037 * 294.92699 * 1 2 3 23 23 H 1.08991 * 109.46998 * 54.92636 * 1 2 3 24 24 H 1.08993 * 109.47431 * 239.99134 * 2 1 3 25 25 H 1.09007 * 109.47160 * 119.99483 * 2 1 3 26 26 H 0.96997 * 119.99905 * 179.97438 * 8 7 5 27 27 H 1.00906 * 111.00175 * 79.97589 * 13 3 2 28 28 H 1.08998 * 109.47016 * 325.45447 * 14 13 3 29 29 H 1.09006 * 109.46903 * 299.99924 * 15 14 13 30 30 H 1.09003 * 109.47025 * 59.99656 * 15 14 13 31 31 H 1.09002 * 109.46943 * 179.97438 * 16 15 14 32 32 H 1.08995 * 109.47201 * 59.99807 * 16 15 14 33 33 H 1.09001 * 109.46882 * 299.99439 * 17 16 15 34 34 H 1.00900 * 111.00276 * 60.00055 * 18 17 16 35 35 H 1.00900 * 110.99691 * 183.95389 * 18 17 16 36 36 H 1.08996 * 109.46958 * 179.97438 * 19 17 16 37 37 H 1.09006 * 109.46664 * 59.99860 * 19 17 16 38 38 H 1.08998 * 109.47703 * 300.00360 * 20 14 13 39 39 H 1.09002 * 109.47075 * 60.00518 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6194 1.9765 -0.8520 5 6 3.5437 1.4436 -0.0991 6 1 4.1362 1.8927 0.6842 7 6 4.1632 0.8712 -1.1900 8 7 3.4417 0.3239 -2.1436 9 14 6.0270 0.8732 -1.3132 10 1 6.6007 0.1460 -0.1524 11 1 6.4406 0.2024 -2.5718 12 1 6.5216 2.2734 -1.3136 13 7 1.6309 2.1065 1.2448 14 6 1.5797 3.5644 1.0715 15 6 0.2171 3.9626 0.5007 16 6 0.1640 5.4809 0.3197 17 6 0.3691 6.1635 1.6736 18 7 0.3175 7.6213 1.4997 19 6 1.7316 5.7653 2.2443 20 6 1.7845 4.2465 2.4256 21 1 -0.3634 -1.0236 -0.0909 22 1 -0.3633 0.4331 0.9320 23 1 -0.3633 0.5905 -0.8410 24 1 1.8933 -0.5139 -0.8898 25 1 1.8933 -0.5138 0.8901 26 1 3.8774 -0.0784 -2.9112 27 1 2.2421 1.8543 2.0070 28 1 2.3665 3.8765 0.3847 29 1 0.0712 3.4767 -0.4640 30 1 -0.5697 3.6505 1.1875 31 1 -0.8066 5.7645 -0.0874 32 1 0.9508 5.7926 -0.3672 33 1 -0.4178 5.8518 2.3604 34 1 -0.5735 7.9094 1.1239 35 1 0.5142 8.0961 2.3680 36 1 1.8779 6.2519 3.2086 37 1 2.5184 6.0770 1.5573 38 1 0.9977 3.9344 3.1123 39 1 2.7552 3.9628 2.8322 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086729855.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:31 Heat of formation + Delta-G solvation = -31.030162 kcal Electronic energy + Delta-G solvation = -16565.488661 eV Core-core repulsion = 14120.292548 eV Total energy + Delta-G solvation = -2445.196113 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.64858 -35.84157 -33.37871 -31.62764 -30.48006 -30.20474 -27.04698 -25.17544 -22.77132 -22.34119 -20.68487 -19.39195 -19.12530 -16.53558 -15.42965 -15.28274 -14.89017 -14.76325 -14.19394 -13.72319 -13.21657 -12.88489 -12.76449 -12.02885 -11.86782 -11.72397 -11.38605 -11.21775 -11.01539 -10.98481 -10.71434 -10.64284 -10.60630 -10.19351 -10.04640 -9.64141 -9.48891 -9.36489 -8.97525 -8.67175 -8.33581 -7.18994 -5.96150 -4.09085 3.29867 3.34977 3.37446 4.41872 4.48406 4.97960 5.03824 5.22122 5.30999 5.52682 5.58017 5.79273 5.81963 5.89194 5.93669 6.18581 6.24449 6.34798 6.43038 6.45650 6.53322 6.56662 6.66348 6.75290 6.81468 6.98201 7.17765 7.19716 7.21217 7.43066 7.50195 7.64763 7.81492 8.13559 8.22398 8.39836 8.73432 9.04550 9.58399 11.03679 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.026769 B = 0.007749 C = 0.006690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.733705 B = 3612.441579 C = 4184.486260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.107 4.107 3 C 0.216 3.784 4 H 0.033 0.967 5 C -0.545 4.545 6 H 0.052 0.948 7 C 0.067 3.933 8 N -0.886 5.886 9 Si 0.887 3.113 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.687 5.687 14 C 0.093 3.907 15 C -0.101 4.101 16 C -0.110 4.110 17 C 0.092 3.908 18 N -0.850 5.850 19 C -0.108 4.108 20 C -0.117 4.117 21 H 0.023 0.977 22 H 0.046 0.954 23 H 0.036 0.964 24 H 0.089 0.911 25 H 0.029 0.971 26 H 0.261 0.739 27 H 0.326 0.674 28 H 0.048 0.952 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.068 0.932 33 H 0.031 0.969 34 H 0.337 0.663 35 H 0.336 0.664 36 H 0.053 0.947 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.070 8.690 6.888 12.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.145 4.145 3 C 0.108 3.892 4 H 0.051 0.949 5 C -0.584 4.584 6 H 0.070 0.930 7 C -0.135 4.135 8 N -0.524 5.524 9 Si 0.715 3.285 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.204 1.204 13 N -0.316 5.316 14 C -0.017 4.017 15 C -0.140 4.140 16 C -0.148 4.148 17 C -0.018 4.018 18 N -0.379 5.379 19 C -0.146 4.146 20 C -0.155 4.155 21 H 0.042 0.958 22 H 0.065 0.935 23 H 0.055 0.945 24 H 0.107 0.893 25 H 0.048 0.952 26 H 0.071 0.929 27 H 0.143 0.857 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.049 0.951 34 H 0.149 0.851 35 H 0.148 0.852 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.129 8.384 6.064 12.026 hybrid contribution 1.285 0.152 0.497 1.386 sum -4.844 8.535 6.561 11.805 Atomic orbital electron populations 1.21680 0.99041 0.98141 1.00351 1.21500 0.92044 0.99408 1.01579 1.19159 0.92410 0.91002 0.86649 0.94915 1.21855 0.92846 1.37829 1.05856 0.93025 1.24928 0.97863 0.95044 0.95663 1.69865 1.34938 1.37998 1.09586 0.86739 0.86239 0.78169 0.77330 1.20330 1.21243 1.20414 1.60925 1.56513 1.05039 1.09142 1.21306 0.96058 0.89596 0.94772 1.21476 0.97959 0.93204 1.01380 1.21544 1.01319 0.95794 0.96190 1.21372 0.96765 0.86907 0.96795 1.58744 1.38725 1.06506 1.33925 1.21510 0.96964 0.96069 1.00095 1.21695 1.01435 0.94079 0.98333 0.95807 0.93483 0.94506 0.89279 0.95210 0.92872 0.85731 0.93417 0.91778 0.92354 0.92833 0.91360 0.95062 0.85053 0.85177 0.92869 0.91242 0.92010 0.92183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 9.73 37.16 0.36 -2.44 16 2 C -0.11 -2.57 5.44 -26.73 -0.15 -2.72 16 3 C 0.22 5.32 1.80 -68.87 -0.12 5.20 16 4 H 0.03 0.90 7.15 -51.93 -0.37 0.53 16 5 C -0.54 -14.72 8.21 -34.44 -0.28 -15.01 16 6 H 0.05 1.39 7.76 -52.49 -0.41 0.98 16 7 C 0.07 1.86 5.30 -17.82 -0.09 1.76 16 8 N -0.89 -25.18 11.30 55.43 0.63 -24.56 16 9 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 13 N -0.69 -14.27 5.55 -100.96 -0.56 -14.83 16 14 C 0.09 1.73 2.30 -67.71 -0.16 1.57 16 15 C -0.10 -1.72 5.41 -26.73 -0.14 -1.86 16 16 C -0.11 -1.60 5.50 -26.73 -0.15 -1.74 16 17 C 0.09 1.19 3.24 -67.71 -0.22 0.97 16 18 N -0.85 -9.40 9.25 -4.66 -0.04 -9.44 16 19 C -0.11 -1.47 5.47 -26.71 -0.15 -1.62 16 20 C -0.12 -1.79 5.19 -26.71 -0.14 -1.93 16 21 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.05 0.93 7.87 -51.93 -0.41 0.52 16 23 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.09 2.40 5.97 -51.93 -0.31 2.09 16 25 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 27 H 0.33 6.74 8.06 -39.29 -0.32 6.43 16 28 H 0.05 1.04 7.59 -51.93 -0.39 0.64 16 29 H 0.06 1.21 7.45 -51.93 -0.39 0.82 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.34 3.20 9.04 -39.29 -0.36 2.85 16 35 H 0.34 3.13 8.99 -39.29 -0.35 2.78 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.06 0.93 8.12 -51.93 -0.42 0.51 16 LS Contribution 302.27 15.07 4.56 4.56 Total: -1.00 -27.60 302.27 -8.77 -36.37 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -7.09 Total: 9.44 kcal Atomic # 6 Polarization: -16.58 SS G_CDS: -1.24 Total: -17.82 kcal Atomic # 7 Polarization: -48.85 SS G_CDS: 0.02 Total: -48.83 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -27.60 -8.77 -36.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086729855.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.340 kcal (2) G-P(sol) polarization free energy of solvation -27.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds