Wall clock time and date at job start Mon Mar 30 2020 03:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47268 * 2 1 4 4 H 1.08997 * 109.46890 * 303.99737 * 3 2 1 5 5 C 1.50696 * 109.47092 * 184.00026 * 3 2 1 6 6 H 1.08000 * 120.00204 * 239.99770 * 5 3 2 7 7 C 1.37888 * 120.00007 * 59.99933 * 5 3 2 8 8 N 1.31511 * 119.99875 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 119.99988 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47339 * 59.99872 * 9 7 5 11 11 H 1.48500 * 109.47064 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47465 * 299.99912 * 9 7 5 13 13 N 1.46895 * 109.47176 * 64.00039 * 3 2 1 14 14 C 1.46907 * 110.99952 * 203.92070 * 13 3 2 15 15 C 1.53008 * 109.46818 * 85.45012 * 14 13 3 16 16 C 1.52995 * 109.47148 * 180.02562 * 15 14 13 17 17 C 1.53002 * 109.46915 * 300.00058 * 16 15 14 18 18 N 1.46907 * 109.46775 * 180.02562 * 17 16 15 19 19 C 1.52998 * 109.47389 * 59.99961 * 17 16 15 20 20 C 1.52993 * 109.47340 * 205.44667 * 14 13 3 21 21 H 1.09000 * 109.47227 * 174.92681 * 1 2 3 22 22 H 1.09002 * 109.47037 * 294.92699 * 1 2 3 23 23 H 1.08991 * 109.46998 * 54.92636 * 1 2 3 24 24 H 1.08993 * 109.47431 * 239.99134 * 2 1 3 25 25 H 1.09007 * 109.47160 * 119.99483 * 2 1 3 26 26 H 0.96997 * 119.99905 * 179.97438 * 8 7 5 27 27 H 1.00906 * 111.00175 * 79.97589 * 13 3 2 28 28 H 1.08998 * 109.47016 * 325.45447 * 14 13 3 29 29 H 1.09006 * 109.46903 * 299.99924 * 15 14 13 30 30 H 1.09003 * 109.47025 * 59.99656 * 15 14 13 31 31 H 1.09002 * 109.46943 * 179.97438 * 16 15 14 32 32 H 1.08995 * 109.47201 * 59.99807 * 16 15 14 33 33 H 1.09001 * 109.46882 * 299.99439 * 17 16 15 34 34 H 1.00900 * 111.00276 * 60.00055 * 18 17 16 35 35 H 1.00900 * 110.99691 * 183.95389 * 18 17 16 36 36 H 1.08996 * 109.46958 * 179.97438 * 19 17 16 37 37 H 1.09006 * 109.46664 * 59.99860 * 19 17 16 38 38 H 1.08998 * 109.47703 * 300.00360 * 20 14 13 39 39 H 1.09002 * 109.47075 * 60.00518 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6194 1.9765 -0.8520 5 6 3.5437 1.4436 -0.0991 6 1 4.1362 1.8927 0.6842 7 6 4.1632 0.8712 -1.1900 8 7 3.4417 0.3239 -2.1436 9 14 6.0270 0.8732 -1.3132 10 1 6.6007 0.1460 -0.1524 11 1 6.4406 0.2024 -2.5718 12 1 6.5216 2.2734 -1.3136 13 7 1.6309 2.1065 1.2448 14 6 1.5797 3.5644 1.0715 15 6 0.2171 3.9626 0.5007 16 6 0.1640 5.4809 0.3197 17 6 0.3691 6.1635 1.6736 18 7 0.3175 7.6213 1.4997 19 6 1.7316 5.7653 2.2443 20 6 1.7845 4.2465 2.4256 21 1 -0.3634 -1.0236 -0.0909 22 1 -0.3633 0.4331 0.9320 23 1 -0.3633 0.5905 -0.8410 24 1 1.8933 -0.5139 -0.8898 25 1 1.8933 -0.5138 0.8901 26 1 3.8774 -0.0784 -2.9112 27 1 2.2421 1.8543 2.0070 28 1 2.3665 3.8765 0.3847 29 1 0.0712 3.4767 -0.4640 30 1 -0.5697 3.6505 1.1875 31 1 -0.8066 5.7645 -0.0874 32 1 0.9508 5.7926 -0.3672 33 1 -0.4178 5.8518 2.3604 34 1 -0.5735 7.9094 1.1239 35 1 0.5142 8.0961 2.3680 36 1 1.8779 6.2519 3.2086 37 1 2.5184 6.0770 1.5573 38 1 0.9977 3.9344 3.1123 39 1 2.7552 3.9628 2.8322 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086729855.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:31 Heat of formation + Delta-G solvation = -49.831771 kcal Electronic energy + Delta-G solvation = -16566.303960 eV Core-core repulsion = 14120.292548 eV Total energy + Delta-G solvation = -2446.011412 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.97979 -37.51236 -34.91449 -33.51666 -31.82563 -31.62737 -28.72878 -26.84046 -24.57450 -23.67064 -22.00909 -21.23826 -20.48145 -18.61610 -16.84241 -16.57049 -16.34859 -16.00060 -15.72819 -15.39029 -14.72711 -14.62248 -14.32075 -13.55474 -13.37102 -13.08746 -13.07140 -13.06003 -12.70151 -12.51691 -12.41826 -12.18894 -11.96996 -11.87622 -11.60058 -11.47688 -11.24825 -10.91748 -10.80810 -10.44528 -9.54846 -9.02092 -8.05054 -6.27582 1.37622 1.37810 1.45585 2.39260 3.13841 3.43758 3.80832 3.81369 3.89707 4.31442 4.39679 4.49905 4.57584 4.60067 4.64472 4.67491 4.77103 4.87081 4.95333 5.05250 5.10172 5.16805 5.22489 5.31461 5.34654 5.41316 5.44432 5.50343 5.57401 5.67754 5.80146 6.13391 6.23289 6.31543 6.43025 6.69420 6.86952 7.05305 7.43936 8.90885 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.026769 B = 0.007749 C = 0.006690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.733705 B = 3612.441579 C = 4184.486260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.103 4.103 3 C 0.225 3.775 4 H -0.003 1.003 5 C -0.560 4.560 6 H 0.048 0.952 7 C 0.019 3.981 8 N -0.911 5.911 9 Si 0.948 3.052 10 H -0.270 1.270 11 H -0.283 1.283 12 H -0.277 1.277 13 N -0.676 5.676 14 C 0.092 3.908 15 C -0.094 4.094 16 C -0.105 4.105 17 C 0.100 3.900 18 N -0.855 5.855 19 C -0.104 4.104 20 C -0.108 4.108 21 H 0.043 0.957 22 H 0.058 0.942 23 H 0.028 0.972 24 H 0.059 0.941 25 H 0.028 0.972 26 H 0.262 0.738 27 H 0.328 0.672 28 H 0.007 0.993 29 H 0.034 0.966 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.046 0.954 33 H 0.045 0.955 34 H 0.349 0.651 35 H 0.349 0.651 36 H 0.079 0.921 37 H 0.049 0.951 38 H 0.077 0.923 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.548 9.668 8.499 14.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.142 4.142 3 C 0.116 3.884 4 H 0.015 0.985 5 C -0.599 4.599 6 H 0.066 0.934 7 C -0.181 4.181 8 N -0.550 5.550 9 Si 0.774 3.226 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.202 1.202 13 N -0.305 5.305 14 C -0.018 4.018 15 C -0.133 4.133 16 C -0.143 4.143 17 C -0.012 4.012 18 N -0.386 5.386 19 C -0.142 4.142 20 C -0.146 4.146 21 H 0.062 0.938 22 H 0.077 0.923 23 H 0.047 0.953 24 H 0.077 0.923 25 H 0.047 0.953 26 H 0.071 0.929 27 H 0.144 0.856 28 H 0.026 0.974 29 H 0.053 0.947 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.162 0.838 35 H 0.163 0.837 36 H 0.097 0.903 37 H 0.068 0.932 38 H 0.096 0.904 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.616 9.379 7.691 13.817 hybrid contribution 1.419 -0.129 -0.018 1.425 sum -5.197 9.251 7.674 13.094 Atomic orbital electron populations 1.21530 0.96327 0.99425 1.00624 1.21366 0.94459 0.98461 0.99937 1.18894 0.91124 0.91316 0.87056 0.98490 1.22178 0.94261 1.37623 1.05875 0.93418 1.25667 1.02132 0.94833 0.95440 1.70000 1.36510 1.38570 1.09965 0.85767 0.81149 0.78127 0.77535 1.19550 1.20785 1.20240 1.60888 1.55812 1.06394 1.07417 1.21369 0.95830 0.88349 0.96240 1.21379 0.97094 0.94930 0.99896 1.21475 1.01539 0.94017 0.97308 1.21212 0.96512 0.87969 0.95460 1.58635 1.39698 1.05346 1.34953 1.21471 0.97000 0.94702 1.01064 1.21608 1.01816 0.95118 0.96104 0.93794 0.92261 0.95267 0.92296 0.95332 0.92909 0.85556 0.97446 0.94689 0.91124 0.91061 0.93505 0.93670 0.83807 0.83682 0.90273 0.93168 0.90444 0.92480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.99 9.73 71.98 0.70 -4.29 16 2 C -0.10 -5.07 5.44 30.59 0.17 -4.90 16 3 C 0.23 11.43 1.80 44.17 0.08 11.51 16 4 H 0.00 -0.16 7.15 -2.39 -0.02 -0.18 16 5 C -0.56 -31.03 8.21 25.60 0.21 -30.82 16 6 H 0.05 2.61 7.76 -2.91 -0.02 2.59 16 7 C 0.02 1.08 5.30 84.66 0.45 1.52 16 8 N -0.91 -53.16 11.30 21.45 0.24 -52.92 16 9 Si 0.95 44.21 29.54 68.60 2.03 46.24 16 10 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 13 N -0.68 -28.32 5.55 -473.32 -2.63 -30.95 16 14 C 0.09 3.47 2.30 44.91 0.10 3.57 16 15 C -0.09 -3.18 5.41 30.60 0.17 -3.01 16 16 C -0.10 -2.95 5.50 30.59 0.17 -2.78 16 17 C 0.10 2.31 3.24 44.91 0.15 2.45 16 18 N -0.85 -16.53 9.25 -168.66 -1.56 -18.09 16 19 C -0.10 -2.62 5.47 30.61 0.17 -2.46 16 20 C -0.11 -3.16 5.19 30.61 0.16 -3.00 16 21 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 22 H 0.06 2.26 7.87 -2.39 -0.02 2.25 16 23 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.06 3.25 5.97 -2.39 -0.01 3.24 16 25 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 26 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 27 H 0.33 13.51 8.06 -89.69 -0.72 12.78 16 28 H 0.01 0.34 7.59 -2.39 -0.02 0.32 16 29 H 0.03 1.36 7.45 -2.38 -0.02 1.34 16 30 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.35 5.58 9.04 -89.69 -0.81 4.77 16 35 H 0.35 5.36 8.99 -89.69 -0.81 4.55 16 36 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 38 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.06 1.70 8.12 -2.39 -0.02 1.68 16 Total: -1.00 -60.25 302.27 -0.72 -60.97 By element: Atomic # 1 Polarization: 28.26 SS G_CDS: -1.31 Total: 26.94 kcal Atomic # 6 Polarization: -34.71 SS G_CDS: 2.51 Total: -32.20 kcal Atomic # 7 Polarization: -98.01 SS G_CDS: -3.95 Total: -101.95 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -60.25 -0.72 -60.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086729855.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.136 kcal (2) G-P(sol) polarization free energy of solvation -60.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds