Wall clock time and date at job start Mon Mar 30 2020 02:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46895 * 109.47270 * 2 1 4 4 C 1.46897 * 111.00360 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.49649 * 35.00158 * 4 3 2 6 6 C 1.53035 * 109.50281 * 155.06418 * 4 3 2 7 7 C 1.53042 * 109.54111 * 181.35075 * 6 4 3 8 8 H 1.08998 * 109.49332 * 58.58800 * 7 6 4 9 9 C 1.53004 * 109.49731 * 178.68264 * 7 6 4 10 10 C 1.52997 * 109.47188 * 184.99977 * 9 7 6 11 11 C 1.53188 * 109.31109 * 298.63477 * 7 6 4 12 12 N 1.46927 * 108.77461 * 54.63543 * 11 7 6 13 13 C 1.36943 * 120.62699 * 126.36783 * 12 11 7 14 14 H 1.07995 * 120.00292 * 331.82416 * 13 12 11 15 15 C 1.38812 * 119.99645 * 151.82695 * 13 12 11 16 16 N 1.31623 * 120.00200 * 343.09598 * 15 13 12 17 17 Si 1.86799 * 119.99894 * 163.08679 * 15 13 12 18 18 H 1.48504 * 109.47088 * 60.00360 * 17 15 13 19 19 H 1.48505 * 109.47410 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47382 * 300.00263 * 17 15 13 21 21 C 1.46915 * 118.73945 * 306.38960 * 12 11 7 22 22 H 1.09004 * 109.46989 * 300.00048 * 1 2 3 23 23 H 1.08995 * 109.47306 * 59.99359 * 1 2 3 24 24 H 1.09000 * 109.47276 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46989 * 239.99952 * 2 1 3 26 26 H 1.08997 * 109.47217 * 120.00104 * 2 1 3 27 27 H 1.00899 * 111.00445 * 303.95571 * 3 2 1 28 28 H 1.09007 * 109.46221 * 301.37437 * 6 4 3 29 29 H 1.09000 * 109.46019 * 61.34423 * 6 4 3 30 30 H 1.08999 * 109.47079 * 305.00449 * 9 7 6 31 31 H 1.08998 * 109.46963 * 64.99915 * 9 7 6 32 32 H 1.09002 * 109.47101 * 300.00536 * 10 9 7 33 33 H 1.09008 * 109.46797 * 59.99744 * 10 9 7 34 34 H 1.08992 * 109.47397 * 180.02562 * 10 9 7 35 35 H 1.09000 * 109.58298 * 174.42044 * 11 7 6 36 36 H 1.08997 * 109.58961 * 294.70443 * 11 7 6 37 37 H 0.96997 * 119.99872 * 180.02562 * 16 15 13 38 38 H 1.09006 * 109.59027 * 293.82145 * 21 12 11 39 39 H 1.09006 * 109.59029 * 173.39863 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4881 1.4242 -0.0006 5 1 3.8740 0.5926 -0.5903 6 6 3.9637 2.7455 -0.6088 7 6 5.4935 2.7731 -0.6408 8 1 5.8604 1.9288 -1.2244 9 6 5.9674 4.0804 -1.2790 10 6 7.4902 4.0542 -1.4245 11 6 6.0319 2.6781 0.7902 12 7 5.4631 1.4846 1.4312 13 6 6.2777 0.5490 2.0111 14 1 7.2838 0.4075 1.6449 15 6 5.8103 -0.2176 3.0698 16 7 4.7374 0.1598 3.7323 17 14 6.7037 -1.7850 3.5539 18 1 8.1015 -1.4602 3.9360 19 1 6.0091 -2.4153 4.7053 20 1 6.7106 -2.7260 2.4051 21 6 4.0039 1.3138 1.4376 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 1.6442 1.9013 -0.7813 28 1 3.5775 2.8379 -1.6240 29 1 3.5983 3.5758 -0.0044 30 1 5.5103 4.1914 -2.2622 31 1 5.6772 4.9195 -0.6467 32 1 7.9473 3.9432 -0.4412 33 1 7.7804 3.2150 -2.0568 34 1 7.8279 4.9857 -1.8787 35 1 7.1187 2.5976 0.7671 36 1 5.7432 3.5682 1.3492 37 1 4.4110 -0.3757 4.4723 38 1 3.5476 2.0915 2.0501 39 1 3.7525 0.3331 1.8418 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108019912.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:10 Heat of formation + Delta-G solvation = 0.535265 kcal Electronic energy + Delta-G solvation = -16690.032046 eV Core-core repulsion = 14246.204712 eV Total energy + Delta-G solvation = -2443.827334 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.33672 -35.57536 -34.07735 -31.85389 -30.55172 -28.72843 -26.89284 -25.26546 -23.38432 -21.77224 -21.60228 -19.78655 -18.98617 -16.68438 -15.18060 -14.89449 -14.68802 -14.37110 -13.99964 -13.74042 -13.24270 -13.04392 -12.74028 -12.35689 -12.28724 -11.64083 -11.59554 -11.26949 -11.07509 -10.99465 -10.89195 -10.79185 -10.41662 -10.32544 -10.25729 -10.07413 -9.80741 -9.52738 -9.27553 -8.39103 -7.86691 -6.58356 -5.71974 -3.15600 3.40582 3.46372 3.47501 4.49026 4.63817 5.27078 5.32479 5.43104 5.44230 5.46641 5.57328 5.67097 5.72978 5.83191 5.85288 6.00958 6.07582 6.09314 6.15494 6.28950 6.36650 6.39962 6.41199 6.48818 6.52047 6.61620 6.65952 6.90870 6.95425 7.12331 7.38062 7.58700 7.84340 7.87473 8.00256 8.52342 9.28279 9.91889 10.49013 11.35353 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.015118 B = 0.012090 C = 0.007187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.617906 B = 2315.381480 C = 3895.247879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.055 3.945 3 N -0.682 5.682 4 C 0.062 3.938 5 H 0.034 0.966 6 C -0.103 4.103 7 C -0.103 4.103 8 H 0.063 0.937 9 C -0.114 4.114 10 C -0.151 4.151 11 C 0.152 3.848 12 N -0.593 5.593 13 C -0.255 4.255 14 H 0.064 0.936 15 C 0.004 3.996 16 N -0.898 5.898 17 Si 0.899 3.101 18 H -0.283 1.283 19 H -0.290 1.290 20 H -0.285 1.285 21 C 0.188 3.812 22 H 0.062 0.938 23 H 0.046 0.954 24 H 0.054 0.946 25 H 0.020 0.980 26 H 0.077 0.923 27 H 0.326 0.674 28 H 0.041 0.959 29 H 0.062 0.938 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.050 0.950 34 H 0.045 0.955 35 H 0.053 0.947 36 H 0.017 0.983 37 H 0.254 0.746 38 H 0.024 0.976 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.076 3.808 -9.666 10.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.074 4.074 3 N -0.313 5.313 4 C -0.049 4.049 5 H 0.052 0.948 6 C -0.141 4.141 7 C -0.124 4.124 8 H 0.082 0.918 9 C -0.152 4.152 10 C -0.208 4.208 11 C 0.026 3.974 12 N -0.315 5.315 13 C -0.384 4.384 14 H 0.081 0.919 15 C -0.195 4.195 16 N -0.542 5.542 17 Si 0.729 3.271 18 H -0.209 1.209 19 H -0.216 1.216 20 H -0.211 1.211 21 C 0.061 3.939 22 H 0.081 0.919 23 H 0.065 0.935 24 H 0.073 0.927 25 H 0.038 0.962 26 H 0.095 0.905 27 H 0.143 0.857 28 H 0.059 0.941 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.035 0.965 37 H 0.064 0.936 38 H 0.043 0.957 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.196 3.774 -8.798 10.092 hybrid contribution 0.571 -1.130 -0.673 1.434 sum -2.625 2.644 -9.470 10.177 Atomic orbital electron populations 1.21757 0.95719 1.01081 1.01878 1.21926 0.94745 0.90166 1.00585 1.60508 1.08991 1.13043 1.48794 1.22378 0.85395 0.95722 1.01417 0.94831 1.21612 0.95804 0.98114 0.98615 1.21689 0.94874 0.96474 0.99359 0.91807 1.21506 0.95718 0.98150 0.99848 1.21790 0.96399 1.00636 1.02008 1.20970 0.96574 0.90030 0.89871 1.44043 1.02070 1.20411 1.65020 1.19118 0.97004 1.12348 1.09970 0.91870 1.25047 0.98379 1.00349 0.95749 1.70047 1.25349 1.37794 1.20986 0.86421 0.79171 0.83858 0.77621 1.20882 1.21617 1.21136 1.20663 0.82175 1.02060 0.88953 0.91864 0.93466 0.92736 0.96215 0.90468 0.85710 0.94059 0.91926 0.92984 0.92293 0.92164 0.93084 0.93565 0.92840 0.96543 0.93630 0.95746 0.89812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 10.17 37.16 0.38 -1.55 16 2 C 0.06 0.90 6.20 -3.83 -0.02 0.88 16 3 N -0.68 -11.95 6.31 -106.61 -0.67 -12.63 16 4 C 0.06 1.23 2.64 -67.60 -0.18 1.05 16 5 H 0.03 0.72 7.80 -51.93 -0.41 0.31 16 6 C -0.10 -1.81 4.45 -26.69 -0.12 -1.93 16 7 C -0.10 -1.83 2.34 -90.50 -0.21 -2.04 16 8 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 9 C -0.11 -1.63 5.40 -26.73 -0.14 -1.78 16 10 C -0.15 -2.00 9.67 37.16 0.36 -1.64 16 11 C 0.15 3.27 5.41 -3.71 -0.02 3.25 16 12 N -0.59 -15.28 2.99 -172.33 -0.52 -15.80 16 13 C -0.25 -7.14 9.58 -15.06 -0.14 -7.28 16 14 H 0.06 1.74 7.88 -52.49 -0.41 1.32 16 15 C 0.00 0.10 4.92 -17.43 -0.09 0.02 16 16 N -0.90 -26.58 11.20 55.49 0.62 -25.96 16 17 Si 0.90 22.02 29.59 -169.99 -5.03 16.99 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 C 0.19 4.67 4.77 -3.72 -0.02 4.65 16 22 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.02 0.31 8.06 -51.93 -0.42 -0.11 16 26 H 0.08 1.46 7.57 -51.93 -0.39 1.06 16 27 H 0.33 4.94 8.33 -39.29 -0.33 4.61 16 28 H 0.04 0.63 8.10 -51.92 -0.42 0.21 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.85 6.70 -51.93 -0.35 0.50 16 33 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.05 1.13 6.65 -51.93 -0.35 0.78 16 36 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 38 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 2.33 5.54 -51.93 -0.29 2.05 16 LS Contribution 301.49 15.07 4.54 4.54 Total: -1.00 -29.35 301.49 -8.41 -37.75 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -7.14 Total: 1.48 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: -0.21 Total: -6.38 kcal Atomic # 7 Polarization: -53.82 SS G_CDS: -0.57 Total: -54.39 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.03 Total: 16.99 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.35 -8.41 -37.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108019912.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.290 kcal (2) G-P(sol) polarization free energy of solvation -29.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds