Wall clock time and date at job start Mon Mar 30 2020 02:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46895 * 109.47270 * 2 1 4 4 C 1.46897 * 111.00360 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.49649 * 35.00158 * 4 3 2 6 6 C 1.53035 * 109.50281 * 155.06418 * 4 3 2 7 7 C 1.53042 * 109.54111 * 181.35075 * 6 4 3 8 8 H 1.08998 * 109.49332 * 58.58800 * 7 6 4 9 9 C 1.53004 * 109.49731 * 178.68264 * 7 6 4 10 10 C 1.52997 * 109.47188 * 184.99977 * 9 7 6 11 11 C 1.53188 * 109.31109 * 298.63477 * 7 6 4 12 12 N 1.46927 * 108.77461 * 54.63543 * 11 7 6 13 13 C 1.36943 * 120.62699 * 126.36783 * 12 11 7 14 14 H 1.07995 * 120.00292 * 331.82416 * 13 12 11 15 15 C 1.38812 * 119.99645 * 151.82695 * 13 12 11 16 16 N 1.31623 * 120.00200 * 343.09598 * 15 13 12 17 17 Si 1.86799 * 119.99894 * 163.08679 * 15 13 12 18 18 H 1.48504 * 109.47088 * 60.00360 * 17 15 13 19 19 H 1.48505 * 109.47410 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47382 * 300.00263 * 17 15 13 21 21 C 1.46915 * 118.73945 * 306.38960 * 12 11 7 22 22 H 1.09004 * 109.46989 * 300.00048 * 1 2 3 23 23 H 1.08995 * 109.47306 * 59.99359 * 1 2 3 24 24 H 1.09000 * 109.47276 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46989 * 239.99952 * 2 1 3 26 26 H 1.08997 * 109.47217 * 120.00104 * 2 1 3 27 27 H 1.00899 * 111.00445 * 303.95571 * 3 2 1 28 28 H 1.09007 * 109.46221 * 301.37437 * 6 4 3 29 29 H 1.09000 * 109.46019 * 61.34423 * 6 4 3 30 30 H 1.08999 * 109.47079 * 305.00449 * 9 7 6 31 31 H 1.08998 * 109.46963 * 64.99915 * 9 7 6 32 32 H 1.09002 * 109.47101 * 300.00536 * 10 9 7 33 33 H 1.09008 * 109.46797 * 59.99744 * 10 9 7 34 34 H 1.08992 * 109.47397 * 180.02562 * 10 9 7 35 35 H 1.09000 * 109.58298 * 174.42044 * 11 7 6 36 36 H 1.08997 * 109.58961 * 294.70443 * 11 7 6 37 37 H 0.96997 * 119.99872 * 180.02562 * 16 15 13 38 38 H 1.09006 * 109.59027 * 293.82145 * 21 12 11 39 39 H 1.09006 * 109.59029 * 173.39863 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4881 1.4242 -0.0006 5 1 3.8740 0.5926 -0.5903 6 6 3.9637 2.7455 -0.6088 7 6 5.4935 2.7731 -0.6408 8 1 5.8604 1.9288 -1.2244 9 6 5.9674 4.0804 -1.2790 10 6 7.4902 4.0542 -1.4245 11 6 6.0319 2.6781 0.7902 12 7 5.4631 1.4846 1.4312 13 6 6.2777 0.5490 2.0111 14 1 7.2838 0.4075 1.6449 15 6 5.8103 -0.2176 3.0698 16 7 4.7374 0.1598 3.7323 17 14 6.7037 -1.7850 3.5539 18 1 8.1015 -1.4602 3.9360 19 1 6.0091 -2.4153 4.7053 20 1 6.7106 -2.7260 2.4051 21 6 4.0039 1.3138 1.4376 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 1.6442 1.9013 -0.7813 28 1 3.5775 2.8379 -1.6240 29 1 3.5983 3.5758 -0.0044 30 1 5.5103 4.1914 -2.2622 31 1 5.6772 4.9195 -0.6467 32 1 7.9473 3.9432 -0.4412 33 1 7.7804 3.2150 -2.0568 34 1 7.8279 4.9857 -1.8787 35 1 7.1187 2.5976 0.7671 36 1 5.7432 3.5682 1.3492 37 1 4.4110 -0.3757 4.4723 38 1 3.5476 2.0915 2.0501 39 1 3.7525 0.3331 1.8418 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108019912.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:09 Heat of formation + Delta-G solvation = -18.210074 kcal Electronic energy + Delta-G solvation = -16690.844905 eV Core-core repulsion = 14246.204712 eV Total energy + Delta-G solvation = -2444.640193 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.96705 -37.00510 -35.86599 -33.42702 -32.35907 -30.10106 -28.49497 -27.26372 -24.73714 -23.61126 -22.90675 -21.32254 -20.60430 -18.71095 -16.94433 -16.58733 -16.14862 -15.81576 -15.77889 -15.12679 -14.76564 -14.46715 -14.27580 -14.10690 -13.77105 -13.15444 -12.90209 -12.75433 -12.71504 -12.62324 -12.32728 -12.28647 -12.22507 -12.04467 -11.81139 -11.65156 -11.43631 -11.10908 -10.98819 -10.52284 -9.34493 -8.66616 -7.86767 -5.34614 1.43236 1.45949 1.52908 2.48682 3.12608 3.30458 3.82307 3.94005 4.05000 4.15512 4.21526 4.28631 4.43919 4.52516 4.61118 4.63550 4.67267 4.74458 4.85084 4.92241 5.02732 5.06363 5.15027 5.18487 5.21287 5.26725 5.30492 5.36936 5.45840 5.49602 5.59860 5.64769 5.75584 6.15545 6.38621 6.67134 7.14267 7.86424 8.38224 9.17909 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.015118 B = 0.012090 C = 0.007187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.617906 B = 2315.381480 C = 3895.247879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.055 3.945 3 N -0.687 5.687 4 C 0.075 3.925 5 H 0.021 0.979 6 C -0.097 4.097 7 C -0.093 4.093 8 H 0.056 0.944 9 C -0.106 4.106 10 C -0.150 4.150 11 C 0.149 3.851 12 N -0.613 5.613 13 C -0.268 4.268 14 H 0.066 0.934 15 C -0.050 4.050 16 N -0.931 5.931 17 Si 0.966 3.034 18 H -0.273 1.273 19 H -0.293 1.293 20 H -0.279 1.279 21 C 0.201 3.799 22 H 0.053 0.947 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.028 0.972 26 H 0.040 0.960 27 H 0.346 0.654 28 H 0.078 0.922 29 H 0.058 0.942 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.044 0.956 33 H 0.052 0.948 34 H 0.069 0.931 35 H 0.052 0.948 36 H 0.008 0.992 37 H 0.249 0.751 38 H -0.010 1.010 39 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.168 4.311 -11.938 13.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.075 4.075 3 N -0.320 5.320 4 C -0.036 4.036 5 H 0.039 0.961 6 C -0.135 4.135 7 C -0.114 4.114 8 H 0.075 0.925 9 C -0.144 4.144 10 C -0.208 4.208 11 C 0.024 3.976 12 N -0.336 5.336 13 C -0.398 4.398 14 H 0.083 0.917 15 C -0.246 4.246 16 N -0.577 5.577 17 Si 0.793 3.207 18 H -0.198 1.198 19 H -0.219 1.219 20 H -0.205 1.205 21 C 0.074 3.926 22 H 0.072 0.928 23 H 0.088 0.912 24 H 0.089 0.911 25 H 0.047 0.953 26 H 0.059 0.941 27 H 0.166 0.834 28 H 0.096 0.904 29 H 0.077 0.923 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.026 0.974 37 H 0.058 0.942 38 H 0.008 0.992 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.285 4.302 -11.105 12.354 hybrid contribution 0.604 -1.248 0.055 1.387 sum -2.681 3.054 -11.051 11.774 Atomic orbital electron populations 1.21683 0.92830 1.02405 1.02523 1.21922 0.97084 0.89261 0.99193 1.60346 1.07424 1.14146 1.50062 1.22003 0.86928 0.96995 0.97656 0.96106 1.21574 0.95587 0.96032 1.00271 1.21554 0.94957 0.98427 0.96476 0.92535 1.21456 0.96479 0.95774 1.00736 1.21782 0.95576 1.02012 1.01397 1.21130 0.96614 0.87960 0.91939 1.44332 1.02287 1.21604 1.65390 1.19472 0.97430 1.13018 1.09925 0.91666 1.25839 0.99402 1.03349 0.95966 1.70220 1.27044 1.38887 1.21513 0.85375 0.78245 0.79947 0.77111 1.19834 1.21887 1.20471 1.20359 0.82073 0.98546 0.91604 0.92758 0.91178 0.91149 0.95346 0.94129 0.83418 0.90377 0.92294 0.90453 0.92016 0.93734 0.92933 0.91193 0.92938 0.97446 0.94184 0.99222 0.93598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 10.17 71.98 0.73 -2.63 16 2 C 0.05 1.78 6.20 86.30 0.54 2.31 16 3 N -0.69 -23.54 6.31 -491.19 -3.10 -26.64 16 4 C 0.08 3.01 2.64 44.99 0.12 3.12 16 5 H 0.02 0.89 7.80 -2.39 -0.02 0.87 16 6 C -0.10 -3.19 4.45 30.62 0.14 -3.06 16 7 C -0.09 -3.17 2.34 -10.72 -0.03 -3.19 16 8 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 9 C -0.11 -2.72 5.40 30.59 0.17 -2.56 16 10 C -0.15 -3.60 9.67 71.98 0.70 -2.90 16 11 C 0.15 6.44 5.41 86.36 0.47 6.91 16 12 N -0.61 -32.52 2.99 -699.11 -2.09 -34.62 16 13 C -0.27 -15.42 9.58 84.03 0.81 -14.62 16 14 H 0.07 3.64 7.88 -2.91 -0.02 3.61 16 15 C -0.05 -2.90 4.92 84.86 0.42 -2.48 16 16 N -0.93 -57.48 11.20 21.65 0.24 -57.23 16 17 Si 0.97 46.24 29.59 68.60 2.03 48.27 16 18 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 19 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 20 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 21 C 0.20 10.39 4.77 86.36 0.41 10.80 16 22 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 23 H 0.07 1.41 8.14 -2.39 -0.02 1.40 16 24 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.03 0.87 8.06 -2.38 -0.02 0.85 16 26 H 0.04 1.60 7.57 -2.39 -0.02 1.58 16 27 H 0.35 9.59 8.33 -89.69 -0.75 8.84 16 28 H 0.08 2.06 8.10 -2.38 -0.02 2.04 16 29 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.04 1.19 6.70 -2.39 -0.02 1.17 16 33 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 34 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.05 2.24 6.65 -2.39 -0.02 2.22 16 36 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 37 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 38 H -0.01 -0.59 8.14 -2.38 -0.02 -0.61 16 39 H 0.05 2.70 5.54 -2.38 -0.01 2.69 16 Total: -1.00 -65.93 301.49 1.79 -64.15 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: 0.25 Total: 14.36 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: 4.46 Total: -8.28 kcal Atomic # 7 Polarization: -113.54 SS G_CDS: -4.95 Total: -118.49 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -65.93 1.79 -64.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108019912.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.937 kcal (2) G-P(sol) polarization free energy of solvation -65.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds