Wall clock time and date at job start Mon Mar 30 2020 03:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47041 * 2 1 4 4 H 1.09004 * 109.47248 * 305.31526 * 3 2 1 5 5 C 1.50700 * 109.47270 * 185.32175 * 3 2 1 6 6 H 1.08000 * 119.99874 * 244.23125 * 5 3 2 7 7 C 1.37876 * 120.00424 * 64.22961 * 5 3 2 8 8 N 1.31513 * 119.99933 * 196.58704 * 7 5 3 9 9 Si 1.86798 * 119.99817 * 16.58513 * 7 5 3 10 10 H 1.48493 * 109.47114 * 86.72021 * 9 7 5 11 11 H 1.48501 * 109.47026 * 206.71753 * 9 7 5 12 12 H 1.48500 * 109.47005 * 326.71907 * 9 7 5 13 13 N 1.46893 * 109.47342 * 65.31989 * 3 2 1 14 14 C 1.46909 * 110.99719 * 250.55559 * 13 3 2 15 15 H 1.08999 * 108.92213 * 34.64061 * 14 13 3 16 16 C 1.45888 * 108.93590 * 153.34936 * 14 13 3 17 17 C 1.54309 * 112.18134 * 181.81509 * 16 14 13 18 18 C 1.50439 * 108.49924 * 281.45742 * 17 16 14 19 19 N 1.48008 * 112.82105 * 93.73253 * 18 17 16 20 20 C 1.47996 * 114.62933 * 318.09065 * 19 18 17 21 21 C 1.50440 * 112.83020 * 318.09166 * 20 19 18 22 22 H 1.08997 * 109.47385 * 57.22534 * 1 2 3 23 23 H 1.08993 * 109.46966 * 297.22347 * 1 2 3 24 24 H 1.08999 * 109.46652 * 177.22265 * 1 2 3 25 25 H 1.09001 * 109.47344 * 119.99980 * 2 1 3 26 26 H 1.09006 * 109.47384 * 240.00418 * 2 1 3 27 27 H 0.97008 * 119.99616 * 180.02562 * 8 7 5 28 28 H 1.00893 * 111.00647 * 126.60298 * 13 3 2 29 29 H 1.08996 * 108.93985 * 302.51402 * 16 14 13 30 30 H 1.08999 * 108.93953 * 61.12199 * 16 14 13 31 31 H 1.08994 * 109.63539 * 41.17097 * 17 16 14 32 32 H 1.09009 * 109.62520 * 161.56129 * 17 16 14 33 33 H 1.08995 * 108.81504 * 214.59538 * 18 17 16 34 34 H 1.08994 * 108.81720 * 332.87502 * 18 17 16 35 35 H 1.00904 * 110.99824 * 191.34230 * 19 18 17 36 36 H 1.08999 * 108.81207 * 78.95698 * 20 19 18 37 37 H 1.09004 * 108.80582 * 197.33556 * 20 19 18 38 38 H 1.09004 * 109.63412 * 334.02261 * 21 20 19 39 39 H 1.09009 * 109.62918 * 213.43589 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6010 1.9831 -0.8386 5 6 3.5412 1.4446 -0.1318 6 1 4.1533 1.8257 0.6722 7 6 4.1333 0.9599 -1.2787 8 7 5.4126 0.6551 -1.2799 9 14 3.1184 0.7363 -2.8309 10 1 3.0953 2.0094 -3.5949 11 1 3.7220 -0.3320 -3.6673 12 1 1.7311 0.3537 -2.4643 13 7 1.6580 2.0969 1.2584 14 6 0.6165 3.1078 1.0310 15 1 -0.0419 2.7637 0.2335 16 6 -0.1636 3.2671 2.2535 17 6 -1.3118 4.2838 2.0835 18 6 -0.7376 5.6715 2.1710 19 7 -0.3986 6.2371 0.8460 20 6 0.2514 5.2857 -0.0828 21 6 1.2862 4.4266 0.5913 22 1 -0.3634 0.5563 -0.8640 23 1 -0.3633 0.4701 0.9138 24 1 -0.3632 -1.0265 -0.0498 25 1 1.8934 -0.5138 0.8900 26 1 1.8934 -0.5138 -0.8901 27 1 5.8293 0.3144 -2.0870 28 1 2.4619 2.5022 1.7138 29 1 -0.5845 2.3013 2.5329 30 1 0.4955 3.6081 3.0518 31 1 -1.7843 4.1435 1.1113 32 1 -2.0491 4.1389 2.8733 33 1 -1.4647 6.3229 2.6557 34 1 0.1650 5.6406 2.7813 35 1 0.1482 7.0798 0.9417 36 1 -0.5126 4.6406 -0.5166 37 1 0.7314 5.8485 -0.8834 38 1 1.6810 4.9460 1.4645 39 1 2.0950 4.2116 -0.1072 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160678608.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:52 Heat of formation + Delta-G solvation = -7.414682 kcal Electronic energy + Delta-G solvation = -16891.368575 eV Core-core repulsion = 14447.196506 eV Total energy + Delta-G solvation = -2444.172069 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.16128 -36.07862 -33.27175 -32.16653 -31.77407 -29.52874 -26.97103 -25.27700 -23.75881 -22.37135 -20.29322 -19.80433 -19.46630 -17.08900 -16.25569 -15.43145 -15.04110 -14.50938 -13.94655 -13.61031 -13.56552 -12.92963 -12.77432 -12.55459 -12.28140 -12.10593 -11.75288 -11.73047 -11.22953 -11.04372 -10.86648 -10.69387 -10.59591 -10.42432 -10.16986 -10.03977 -9.78781 -9.33521 -9.15619 -8.42524 -8.29567 -7.37925 -6.16283 -4.10851 3.25613 3.35236 3.38789 4.23324 4.38531 4.85551 4.91629 5.12540 5.14828 5.29582 5.43746 5.49861 5.68316 5.81413 5.93942 5.97235 6.00787 6.09649 6.11351 6.13414 6.24355 6.31991 6.41228 6.41948 6.61570 6.64194 6.77828 6.81364 7.08232 7.12467 7.18304 7.44889 7.47359 7.64262 8.02069 8.36912 8.60073 8.93246 9.50859 10.96611 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.031988 B = 0.008351 C = 0.007703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.120372 B = 3352.047522 C = 3634.050691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.109 4.109 3 C 0.193 3.807 4 H 0.008 0.992 5 C -0.537 4.537 6 H 0.073 0.927 7 C 0.079 3.921 8 N -0.889 5.889 9 Si 0.861 3.139 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.250 1.250 13 N -0.679 5.679 14 C 0.092 3.908 15 H 0.066 0.934 16 C -0.107 4.107 17 C -0.121 4.121 18 C 0.067 3.933 19 N -0.704 5.704 20 C 0.065 3.935 21 C -0.180 4.180 22 H 0.035 0.965 23 H 0.054 0.946 24 H 0.033 0.967 25 H 0.056 0.944 26 H 0.049 0.951 27 H 0.264 0.736 28 H 0.338 0.662 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.030 0.970 35 H 0.338 0.662 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.668 7.291 4.267 14.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.148 4.148 3 C 0.084 3.916 4 H 0.025 0.975 5 C -0.575 4.575 6 H 0.091 0.909 7 C -0.124 4.124 8 N -0.526 5.526 9 Si 0.688 3.312 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.174 1.174 13 N -0.309 5.309 14 C -0.019 4.019 15 H 0.085 0.915 16 C -0.145 4.145 17 C -0.159 4.159 18 C -0.062 4.062 19 N -0.335 5.335 20 C -0.064 4.064 21 C -0.221 4.221 22 H 0.054 0.946 23 H 0.073 0.927 24 H 0.052 0.948 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.156 0.844 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.048 0.952 35 H 0.155 0.845 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.552 6.537 4.105 14.735 hybrid contribution 1.167 0.520 -1.020 1.634 sum -11.385 7.057 3.085 13.745 Atomic orbital electron populations 1.21799 0.98592 0.99275 1.00604 1.21866 0.92751 0.99455 1.00696 1.19438 0.94989 0.90709 0.86511 0.97457 1.21338 0.89700 1.43018 1.03465 0.90881 1.24906 0.94721 0.93940 0.98878 1.70003 1.11717 1.42454 1.28445 0.87241 0.82238 0.77984 0.83712 1.20671 1.21440 1.17410 1.60777 1.14071 1.30148 1.25880 1.20597 0.94382 0.89983 0.96903 0.91542 1.20588 0.96385 0.99175 0.98395 1.21396 0.98024 0.93984 1.02544 1.21586 0.98883 0.96080 0.89639 1.60253 1.51373 1.08445 1.13471 1.21672 0.95583 0.94601 0.94552 1.22740 0.99729 0.98253 1.01343 0.94589 0.92654 0.94820 0.92504 0.93214 0.92662 0.84380 0.91457 0.92599 0.91056 0.91451 0.91810 0.95210 0.84507 0.91363 0.91917 0.92331 0.90195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 9.12 37.16 0.34 -2.37 16 2 C -0.11 -2.42 4.92 -26.73 -0.13 -2.55 16 3 C 0.19 4.41 1.26 -68.87 -0.09 4.33 16 4 H 0.01 0.18 6.05 -51.93 -0.31 -0.13 16 5 C -0.54 -14.62 9.02 -34.44 -0.31 -14.93 16 6 H 0.07 2.15 7.61 -52.49 -0.40 1.75 16 7 C 0.08 2.23 5.31 -17.82 -0.09 2.13 16 8 N -0.89 -26.75 13.96 55.43 0.77 -25.97 16 9 Si 0.86 21.04 25.83 -169.99 -4.39 16.65 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.25 -5.79 5.53 56.52 0.31 -5.48 16 13 N -0.68 -13.40 5.64 -103.80 -0.58 -13.98 16 14 C 0.09 1.52 1.32 -70.39 -0.09 1.42 16 15 H 0.07 1.17 6.44 -51.93 -0.33 0.84 16 16 C -0.11 -1.52 4.81 -29.41 -0.14 -1.66 16 17 C -0.12 -1.46 5.63 -27.32 -0.15 -1.62 16 18 C 0.07 0.77 6.01 -4.49 -0.03 0.75 16 19 N -0.70 -8.66 6.89 -114.91 -0.79 -9.45 16 20 C 0.07 0.91 6.01 -4.50 -0.03 0.88 16 21 C -0.18 -2.84 4.91 -27.33 -0.13 -2.97 16 22 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 23 H 0.05 0.98 7.52 -51.93 -0.39 0.59 16 24 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 26 H 0.05 1.16 4.92 -51.93 -0.26 0.91 16 27 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 28 H 0.34 6.92 7.58 -39.30 -0.30 6.62 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.06 0.79 7.52 -51.93 -0.39 0.40 16 31 H 0.07 0.93 7.08 -51.93 -0.37 0.56 16 32 H 0.07 0.71 8.14 -51.92 -0.42 0.28 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.03 0.36 6.59 -51.93 -0.34 0.01 16 35 H 0.34 3.66 8.92 -39.29 -0.35 3.31 16 36 H 0.07 1.00 6.58 -51.93 -0.34 0.65 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.89 7.08 -51.93 -0.37 0.53 16 39 H 0.08 1.48 7.79 -51.92 -0.40 1.08 16 LS Contribution 287.36 15.07 4.33 4.33 Total: -1.00 -28.32 287.36 -8.26 -36.58 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -6.74 Total: 8.42 kcal Atomic # 6 Polarization: -15.73 SS G_CDS: -0.86 Total: -16.59 kcal Atomic # 7 Polarization: -48.80 SS G_CDS: -0.60 Total: -49.40 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.39 Total: 16.65 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -28.32 -8.26 -36.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160678608.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.168 kcal (2) G-P(sol) polarization free energy of solvation -28.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds