Wall clock time and date at job start Mon Mar 30 2020 03:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47041 * 2 1 4 4 H 1.09004 * 109.47248 * 305.31526 * 3 2 1 5 5 C 1.50700 * 109.47270 * 185.32175 * 3 2 1 6 6 H 1.08000 * 119.99874 * 244.23125 * 5 3 2 7 7 C 1.37876 * 120.00424 * 64.22961 * 5 3 2 8 8 N 1.31513 * 119.99933 * 196.58704 * 7 5 3 9 9 Si 1.86798 * 119.99817 * 16.58513 * 7 5 3 10 10 H 1.48493 * 109.47114 * 86.72021 * 9 7 5 11 11 H 1.48501 * 109.47026 * 206.71753 * 9 7 5 12 12 H 1.48500 * 109.47005 * 326.71907 * 9 7 5 13 13 N 1.46893 * 109.47342 * 65.31989 * 3 2 1 14 14 C 1.46909 * 110.99719 * 250.55559 * 13 3 2 15 15 H 1.08999 * 108.92213 * 34.64061 * 14 13 3 16 16 C 1.45888 * 108.93590 * 153.34936 * 14 13 3 17 17 C 1.54309 * 112.18134 * 181.81509 * 16 14 13 18 18 C 1.50439 * 108.49924 * 281.45742 * 17 16 14 19 19 N 1.48008 * 112.82105 * 93.73253 * 18 17 16 20 20 C 1.47996 * 114.62933 * 318.09065 * 19 18 17 21 21 C 1.50440 * 112.83020 * 318.09166 * 20 19 18 22 22 H 1.08997 * 109.47385 * 57.22534 * 1 2 3 23 23 H 1.08993 * 109.46966 * 297.22347 * 1 2 3 24 24 H 1.08999 * 109.46652 * 177.22265 * 1 2 3 25 25 H 1.09001 * 109.47344 * 119.99980 * 2 1 3 26 26 H 1.09006 * 109.47384 * 240.00418 * 2 1 3 27 27 H 0.97008 * 119.99616 * 180.02562 * 8 7 5 28 28 H 1.00893 * 111.00647 * 126.60298 * 13 3 2 29 29 H 1.08996 * 108.93985 * 302.51402 * 16 14 13 30 30 H 1.08999 * 108.93953 * 61.12199 * 16 14 13 31 31 H 1.08994 * 109.63539 * 41.17097 * 17 16 14 32 32 H 1.09009 * 109.62520 * 161.56129 * 17 16 14 33 33 H 1.08995 * 108.81504 * 214.59538 * 18 17 16 34 34 H 1.08994 * 108.81720 * 332.87502 * 18 17 16 35 35 H 1.00904 * 110.99824 * 191.34230 * 19 18 17 36 36 H 1.08999 * 108.81207 * 78.95698 * 20 19 18 37 37 H 1.09004 * 108.80582 * 197.33556 * 20 19 18 38 38 H 1.09004 * 109.63412 * 334.02261 * 21 20 19 39 39 H 1.09009 * 109.62918 * 213.43589 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6010 1.9831 -0.8386 5 6 3.5412 1.4446 -0.1318 6 1 4.1533 1.8257 0.6722 7 6 4.1333 0.9599 -1.2787 8 7 5.4126 0.6551 -1.2799 9 14 3.1184 0.7363 -2.8309 10 1 3.0953 2.0094 -3.5949 11 1 3.7220 -0.3320 -3.6673 12 1 1.7311 0.3537 -2.4643 13 7 1.6580 2.0969 1.2584 14 6 0.6165 3.1078 1.0310 15 1 -0.0419 2.7637 0.2335 16 6 -0.1636 3.2671 2.2535 17 6 -1.3118 4.2838 2.0835 18 6 -0.7376 5.6715 2.1710 19 7 -0.3986 6.2371 0.8460 20 6 0.2514 5.2857 -0.0828 21 6 1.2862 4.4266 0.5913 22 1 -0.3634 0.5563 -0.8640 23 1 -0.3633 0.4701 0.9138 24 1 -0.3632 -1.0265 -0.0498 25 1 1.8934 -0.5138 0.8900 26 1 1.8934 -0.5138 -0.8901 27 1 5.8293 0.3144 -2.0870 28 1 2.4619 2.5022 1.7138 29 1 -0.5845 2.3013 2.5329 30 1 0.4955 3.6081 3.0518 31 1 -1.7843 4.1435 1.1113 32 1 -2.0491 4.1389 2.8733 33 1 -1.4647 6.3229 2.6557 34 1 0.1650 5.6406 2.7813 35 1 0.1482 7.0798 0.9417 36 1 -0.5126 4.6406 -0.5166 37 1 0.7314 5.8485 -0.8834 38 1 1.6810 4.9460 1.4645 39 1 2.0950 4.2116 -0.1072 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160678608.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:52 Heat of formation + Delta-G solvation = -28.427831 kcal Electronic energy + Delta-G solvation = -16892.279773 eV Core-core repulsion = 14447.196506 eV Total energy + Delta-G solvation = -2445.083268 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.41742 -37.62841 -34.85249 -33.78624 -33.18826 -31.00988 -28.70204 -26.48748 -25.09155 -24.08226 -21.67079 -21.35144 -20.70100 -18.99873 -17.49189 -17.14110 -16.31835 -15.91416 -15.46294 -15.06251 -15.01962 -14.68123 -14.08949 -14.02847 -13.60193 -13.54235 -13.40721 -13.10453 -12.85244 -12.65159 -12.21343 -12.17034 -11.91151 -11.79506 -11.68465 -11.46499 -11.36790 -11.10115 -11.08451 -10.54996 -9.35629 -8.95879 -8.35540 -6.33802 1.30771 1.34598 1.44365 2.31955 2.98719 3.24331 3.50617 3.71416 4.04981 4.13752 4.31601 4.38600 4.45140 4.53770 4.56633 4.58765 4.69422 4.71682 4.86651 4.90936 4.95894 5.03208 5.15012 5.18140 5.24648 5.31013 5.33803 5.39485 5.45346 5.51160 5.61254 5.79965 6.04564 6.15171 6.48417 6.53361 6.68765 6.88470 7.32069 8.80856 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.031988 B = 0.008351 C = 0.007703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.120372 B = 3352.047522 C = 3634.050691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.111 4.111 3 C 0.201 3.799 4 H 0.005 0.995 5 C -0.539 4.539 6 H 0.035 0.965 7 C 0.024 3.976 8 N -0.938 5.938 9 Si 0.922 3.078 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.227 1.227 13 N -0.678 5.678 14 C 0.095 3.905 15 H 0.061 0.939 16 C -0.103 4.103 17 C -0.113 4.113 18 C 0.064 3.936 19 N -0.702 5.702 20 C 0.072 3.928 21 C -0.171 4.171 22 H 0.041 0.959 23 H 0.062 0.938 24 H 0.054 0.946 25 H 0.044 0.956 26 H 0.036 0.964 27 H 0.265 0.735 28 H 0.331 0.669 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.026 0.974 35 H 0.348 0.652 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.488 7.941 4.236 17.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.150 4.150 3 C 0.092 3.908 4 H 0.023 0.977 5 C -0.577 4.577 6 H 0.053 0.947 7 C -0.175 4.175 8 N -0.577 5.577 9 Si 0.746 3.254 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.150 1.150 13 N -0.307 5.307 14 C -0.015 4.015 15 H 0.079 0.921 16 C -0.141 4.141 17 C -0.151 4.151 18 C -0.064 4.064 19 N -0.334 5.334 20 C -0.058 4.058 21 C -0.212 4.212 22 H 0.060 0.940 23 H 0.081 0.919 24 H 0.073 0.927 25 H 0.063 0.937 26 H 0.055 0.945 27 H 0.074 0.926 28 H 0.148 0.852 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.108 0.892 33 H 0.102 0.898 34 H 0.045 0.955 35 H 0.166 0.834 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -15.401 7.206 4.091 17.489 hybrid contribution 2.104 0.359 -0.900 2.317 sum -13.297 7.565 3.191 15.628 Atomic orbital electron populations 1.21687 0.95361 1.00940 1.01279 1.21798 0.95619 0.98080 0.99476 1.19270 0.91912 0.91848 0.87806 0.97706 1.21651 0.92003 1.41788 1.02250 0.94703 1.25732 0.95729 0.93884 1.02176 1.70133 1.13768 1.44416 1.29415 0.86255 0.81710 0.77998 0.79412 1.20181 1.21388 1.15017 1.60811 1.14212 1.31524 1.24119 1.20687 0.93388 0.89294 0.98108 0.92116 1.20519 0.96811 0.99959 0.96792 1.21360 0.97368 0.93338 1.03072 1.21666 0.99283 0.96297 0.89178 1.60278 1.51027 1.08334 1.13757 1.21545 0.94781 0.94603 0.94898 1.22612 0.99305 0.98442 1.00810 0.94033 0.91851 0.92684 0.93750 0.94533 0.92596 0.85201 0.91665 0.92679 0.91658 0.89171 0.89784 0.95536 0.83443 0.91771 0.91470 0.91984 0.93502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.66 9.12 71.98 0.66 -4.01 16 2 C -0.11 -4.80 4.92 30.59 0.15 -4.65 16 3 C 0.20 9.20 1.26 44.17 0.06 9.26 16 4 H 0.01 0.24 6.05 -2.39 -0.01 0.23 16 5 C -0.54 -30.20 9.02 25.60 0.23 -29.97 16 6 H 0.03 2.16 7.61 -2.91 -0.02 2.14 16 7 C 0.02 1.37 5.31 84.65 0.45 1.82 16 8 N -0.94 -58.21 13.96 21.45 0.30 -57.91 16 9 Si 0.92 43.53 25.83 68.60 1.77 45.30 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 11 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 12 H -0.23 -9.81 5.53 99.48 0.55 -9.26 16 13 N -0.68 -26.64 5.64 -482.32 -2.72 -29.36 16 14 C 0.10 3.03 1.32 43.17 0.06 3.08 16 15 H 0.06 2.03 6.44 -2.39 -0.02 2.01 16 16 C -0.10 -2.68 4.81 28.86 0.14 -2.54 16 17 C -0.11 -2.37 5.63 30.21 0.17 -2.20 16 18 C 0.06 1.29 6.01 85.26 0.51 1.80 16 19 N -0.70 -15.42 6.89 -517.48 -3.56 -18.98 16 20 C 0.07 1.86 6.01 85.26 0.51 2.38 16 21 C -0.17 -5.28 4.91 30.21 0.15 -5.13 16 22 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.06 2.07 7.52 -2.39 -0.02 2.05 16 24 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 26 H 0.04 1.65 4.92 -2.38 -0.01 1.64 16 27 H 0.27 15.46 8.31 -92.70 -0.77 14.69 16 28 H 0.33 13.87 7.58 -89.70 -0.68 13.19 16 29 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.05 1.45 7.52 -2.39 -0.02 1.44 16 31 H 0.06 1.49 7.08 -2.39 -0.02 1.47 16 32 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 33 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.03 0.56 6.59 -2.39 -0.02 0.55 16 35 H 0.35 6.64 8.92 -89.69 -0.80 5.84 16 36 H 0.06 1.74 6.58 -2.39 -0.02 1.73 16 37 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 38 H 0.06 1.85 7.08 -2.39 -0.02 1.83 16 39 H 0.05 1.75 7.79 -2.38 -0.02 1.74 16 Total: -1.00 -61.70 287.36 -1.73 -63.43 By element: Atomic # 1 Polarization: 28.29 SS G_CDS: -0.61 Total: 27.69 kcal Atomic # 6 Polarization: -33.24 SS G_CDS: 3.08 Total: -30.16 kcal Atomic # 7 Polarization: -100.28 SS G_CDS: -5.98 Total: -106.26 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 1.77 Total: 45.30 kcal Total: -61.70 -1.73 -63.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160678608.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.005 kcal (2) G-P(sol) polarization free energy of solvation -61.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds