Wall clock time and date at job start Mon Mar 30 2020 03:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47293 * 2 1 4 4 H 1.09003 * 110.28386 * 310.12851 * 3 2 1 5 5 C 1.54381 * 110.41120 * 72.30347 * 3 2 1 6 6 N 1.48555 * 104.59232 * 142.79490 * 5 3 2 7 7 C 1.48556 * 104.22589 * 320.51802 * 6 5 3 8 8 C 1.54255 * 110.32370 * 187.99754 * 3 2 1 9 9 H 1.08999 * 110.32623 * 122.00584 * 8 3 2 10 10 N 1.46893 * 110.32748 * 359.89495 * 8 3 2 11 11 C 1.46901 * 111.00301 * 131.94002 * 10 8 3 12 12 C 1.46903 * 111.00199 * 255.89493 * 10 8 3 13 13 H 1.08999 * 109.46696 * 308.24574 * 12 10 8 14 14 C 1.53005 * 109.47247 * 68.24156 * 12 10 8 15 15 C 1.50697 * 109.47328 * 188.24681 * 12 10 8 16 16 H 1.07994 * 119.99748 * 359.97438 * 15 12 10 17 17 C 1.37878 * 119.99773 * 179.97438 * 15 12 10 18 18 N 1.31508 * 120.00421 * 359.97438 * 17 15 12 19 19 Si 1.86804 * 119.99579 * 179.97438 * 17 15 12 20 20 H 1.48506 * 109.47086 * 89.99968 * 19 17 15 21 21 H 1.48502 * 109.47012 * 209.99916 * 19 17 15 22 22 H 1.48495 * 109.47151 * 330.00188 * 19 17 15 23 23 H 1.09004 * 109.46992 * 60.00163 * 1 2 3 24 24 H 1.08999 * 109.47212 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47882 * 300.00368 * 1 2 3 26 26 H 1.08989 * 109.47586 * 239.99710 * 2 1 3 27 27 H 1.08997 * 109.46801 * 119.99457 * 2 1 3 28 28 H 1.08992 * 110.41466 * 261.57523 * 5 3 2 29 29 H 1.09007 * 110.41039 * 24.02057 * 5 3 2 30 30 H 1.00907 * 111.00065 * 200.96157 * 6 5 3 31 31 H 1.09000 * 110.41567 * 280.70737 * 7 6 5 32 32 H 1.08995 * 110.41754 * 158.25861 * 7 6 5 33 33 H 1.08998 * 109.46846 * 186.61197 * 11 10 8 34 34 H 1.08990 * 109.46981 * 66.60724 * 11 10 8 35 35 H 1.09008 * 109.46433 * 306.60959 * 11 10 8 36 36 H 1.09004 * 109.46485 * 65.23666 * 14 12 10 37 37 H 1.08993 * 109.46830 * 185.22830 * 14 12 10 38 38 H 1.08991 * 109.47128 * 305.23262 * 14 12 10 39 39 H 0.96994 * 120.00208 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5447 2.0185 -0.7818 5 6 1.8048 2.0967 1.3784 6 7 3.0008 2.9506 1.5964 7 6 4.1293 2.1388 1.0726 8 6 3.5691 1.4701 -0.2013 9 1 3.8244 2.0581 -1.0828 10 7 4.0914 0.1034 -0.3319 11 6 4.9930 -0.0077 -1.4863 12 6 4.7623 -0.3242 0.9031 13 1 5.4960 0.4266 1.1964 14 6 3.7257 -0.4866 2.0167 15 6 5.4570 -1.6405 0.6675 16 1 5.4050 -2.1125 -0.3025 17 6 6.1591 -2.2422 1.6903 18 7 6.2228 -1.6672 2.8713 19 14 7.0197 -3.8743 1.3984 20 1 8.4058 -3.6257 0.9269 21 1 7.0591 -4.6468 2.6661 22 1 6.2784 -4.6479 0.3702 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3635 0.5139 0.8899 26 1 1.8933 -0.5138 -0.8898 27 1 1.8932 -0.5137 0.8900 28 1 0.9011 2.7057 1.3610 29 1 1.7356 1.3342 2.1543 30 1 3.1261 3.1539 2.5768 31 1 4.4239 1.3828 1.8005 32 1 4.9756 2.7793 0.8248 33 1 5.2723 -1.0514 -1.6301 34 1 5.8886 0.5868 -1.3063 35 1 4.4867 0.3593 -2.3792 36 1 3.0466 -1.3013 1.7648 37 1 4.2326 -0.7131 2.9546 38 1 3.1595 0.4385 2.1238 39 1 6.7164 -2.0907 3.5909 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161095585.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:27 Heat of formation + Delta-G solvation = 21.584641 kcal Electronic energy + Delta-G solvation = -17438.030386 eV Core-core repulsion = 14995.115822 eV Total energy + Delta-G solvation = -2442.914564 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.17409 -36.99179 -34.63232 -34.36518 -31.49325 -29.74590 -28.65810 -27.03071 -25.28204 -23.92246 -22.87533 -21.52878 -19.38590 -18.53226 -17.52570 -17.00360 -16.54128 -15.69698 -15.28169 -15.05236 -14.85625 -14.25571 -13.99322 -13.79675 -13.22729 -13.18009 -13.04457 -12.88999 -12.67264 -12.52698 -12.48684 -12.12533 -12.03175 -11.92357 -11.59618 -11.38380 -11.21769 -10.91409 -10.71111 -10.49385 -9.38719 -8.76488 -8.10854 -6.20469 1.40123 1.42022 1.51507 2.41860 3.15727 3.22799 3.67775 3.77835 3.95867 4.18415 4.33241 4.52036 4.59335 4.62508 4.74042 4.75996 4.79641 4.85171 4.87635 5.06560 5.08142 5.10406 5.14964 5.19705 5.26585 5.29718 5.44177 5.55868 5.63727 5.71158 5.76142 5.90046 5.92045 6.28184 6.38885 6.44352 6.81876 6.96539 7.48341 8.95090 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.031586 B = 0.009054 C = 0.008714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.262708 B = 3091.971371 C = 3212.285901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.107 4.107 3 C -0.071 4.071 4 H 0.081 0.919 5 C 0.040 3.960 6 N -0.663 5.663 7 C -0.012 4.012 8 C 0.077 3.923 9 H 0.069 0.931 10 N -0.527 5.527 11 C 0.040 3.960 12 C 0.217 3.783 13 H -0.022 1.022 14 C -0.127 4.127 15 C -0.523 4.523 16 H 0.061 0.939 17 C 0.013 3.987 18 N -0.919 5.919 19 Si 0.953 3.047 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.269 1.269 23 H 0.058 0.942 24 H 0.049 0.951 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.093 0.907 29 H 0.038 0.962 30 H 0.338 0.662 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.003 0.997 35 H 0.070 0.930 36 H 0.031 0.969 37 H 0.047 0.953 38 H 0.052 0.948 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.171 5.442 -4.183 10.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.145 4.145 3 C -0.091 4.091 4 H 0.100 0.900 5 C -0.089 4.089 6 N -0.292 5.292 7 C -0.142 4.142 8 C -0.033 4.033 9 H 0.087 0.913 10 N -0.250 5.250 11 C -0.108 4.108 12 C 0.110 3.890 13 H -0.004 1.004 14 C -0.184 4.184 15 C -0.562 4.562 16 H 0.080 0.920 17 C -0.186 4.186 18 N -0.558 5.558 19 Si 0.780 3.220 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.194 1.194 23 H 0.077 0.923 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.111 0.889 29 H 0.056 0.944 30 H 0.153 0.847 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.022 0.978 35 H 0.089 0.911 36 H 0.050 0.950 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.570 5.565 -4.677 11.238 hybrid contribution 1.744 -1.059 1.001 2.273 sum -6.826 4.506 -3.676 8.967 Atomic orbital electron populations 1.21814 0.95608 1.01272 1.01686 1.21544 0.94584 0.95319 1.03080 1.21895 0.93758 0.96751 0.96684 0.90047 1.23099 0.94288 0.94932 0.96597 1.63690 1.02538 1.40369 1.22586 1.23982 0.94629 0.96491 0.99069 1.22506 0.95943 0.88611 0.96254 0.91278 1.62309 1.37268 1.20601 1.04845 1.22277 0.94091 1.01413 0.93037 1.19108 0.90299 0.93205 0.86402 1.00437 1.22102 0.97801 0.98654 0.99843 1.21618 1.30775 1.06320 0.97440 0.92046 1.25645 0.97254 1.00683 0.94995 1.70018 1.42822 1.40286 1.02723 0.85624 0.78804 0.80173 0.77429 1.20452 1.21162 1.19360 0.92279 0.93199 0.92720 0.92419 0.92227 0.88863 0.94385 0.84749 0.91052 0.92358 0.91988 0.97791 0.91128 0.95021 0.93462 0.92976 0.93159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 9.80 71.98 0.71 -2.95 16 2 C -0.11 -3.42 4.26 30.59 0.13 -3.29 16 3 C -0.07 -2.18 2.82 -9.90 -0.03 -2.21 16 4 H 0.08 2.24 8.13 -2.39 -0.02 2.22 16 5 C 0.04 1.15 5.81 86.45 0.50 1.65 16 6 N -0.66 -20.49 7.62 -500.86 -3.82 -24.31 16 7 C -0.01 -0.43 5.53 86.45 0.48 0.04 16 8 C 0.08 2.73 3.22 45.81 0.15 2.88 16 9 H 0.07 2.35 7.54 -2.39 -0.02 2.34 16 10 N -0.53 -21.64 2.71 -870.95 -2.36 -24.00 16 11 C 0.04 1.55 8.82 127.69 1.13 2.68 16 12 C 0.22 10.58 1.62 44.17 0.07 10.65 16 13 H -0.02 -1.18 6.10 -2.39 -0.01 -1.19 16 14 C -0.13 -5.96 6.39 71.98 0.46 -5.49 16 15 C -0.52 -28.13 7.95 25.60 0.20 -27.93 16 16 H 0.06 3.28 5.85 -2.91 -0.02 3.26 16 17 C 0.01 0.71 5.30 84.66 0.45 1.15 16 18 N -0.92 -52.23 11.38 21.45 0.24 -51.98 16 19 Si 0.95 43.48 29.54 68.60 2.03 45.51 16 20 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 21 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 22 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 23 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.05 1.26 7.70 -2.39 -0.02 1.24 16 26 H 0.06 2.02 7.47 -2.39 -0.02 2.00 16 27 H 0.06 2.22 3.82 -2.39 -0.01 2.21 16 28 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.04 1.18 6.00 -2.38 -0.01 1.17 16 30 H 0.34 9.57 8.92 -89.69 -0.80 8.77 16 31 H 0.07 3.08 3.18 -2.39 -0.01 3.08 16 32 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.06 2.55 5.96 -2.39 -0.01 2.53 16 34 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 35 H 0.07 2.27 8.01 -2.38 -0.02 2.25 16 36 H 0.03 1.51 6.54 -2.38 -0.02 1.49 16 37 H 0.05 2.49 6.23 -2.39 -0.01 2.48 16 38 H 0.05 2.14 2.31 -2.39 -0.01 2.13 16 39 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -57.06 276.86 0.58 -56.48 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: 0.25 Total: 21.12 kcal Atomic # 6 Polarization: -27.06 SS G_CDS: 4.24 Total: -22.81 kcal Atomic # 7 Polarization: -94.36 SS G_CDS: -5.94 Total: -100.29 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -57.06 0.58 -56.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161095585.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.062 kcal (2) G-P(sol) polarization free energy of solvation -57.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds