Wall clock time and date at job start Mon Mar 30 2020 03:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47337 * 2 1 4 4 H 1.09006 * 109.46894 * 55.87124 * 3 2 1 5 5 C 1.50703 * 109.47169 * 175.87114 * 3 2 1 6 6 H 1.08001 * 120.00298 * 114.45110 * 5 3 2 7 7 C 1.37880 * 119.99744 * 294.45367 * 5 3 2 8 8 N 1.31511 * 120.00147 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99845 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46843 * 90.00010 * 9 7 5 11 11 H 1.48494 * 109.47050 * 209.99994 * 9 7 5 12 12 H 1.48500 * 109.47219 * 330.00303 * 9 7 5 13 13 N 1.46899 * 109.47368 * 295.86839 * 3 2 1 14 14 C 1.47435 * 111.00149 * 315.44914 * 13 3 2 15 15 C 1.54314 * 107.24153 * 123.25487 * 14 13 3 16 16 C 1.55144 * 103.01795 * 22.28062 * 15 14 13 17 17 C 1.47849 * 110.99604 * 76.28500 * 13 3 2 18 18 H 1.08996 * 110.37375 * 332.46661 * 17 13 3 19 19 C 1.53007 * 110.37173 * 94.80687 * 17 13 3 20 20 N 1.46897 * 109.47271 * 296.41252 * 19 17 13 21 21 C 1.46892 * 111.00226 * 183.21657 * 20 19 17 22 22 H 1.08997 * 109.47132 * 191.40611 * 1 2 3 23 23 H 1.08994 * 109.47321 * 71.40190 * 1 2 3 24 24 H 1.09004 * 109.46753 * 311.40068 * 1 2 3 25 25 H 1.08994 * 109.47424 * 120.00787 * 2 1 3 26 26 H 1.09004 * 109.46983 * 240.00112 * 2 1 3 27 27 H 0.97000 * 120.00063 * 179.97438 * 8 7 5 28 28 H 1.09007 * 109.88784 * 242.66293 * 14 13 3 29 29 H 1.09004 * 109.89200 * 3.84355 * 14 13 3 30 30 H 1.08999 * 110.71091 * 140.65968 * 15 14 13 31 31 H 1.09000 * 110.70477 * 263.72644 * 15 14 13 32 32 H 1.08994 * 110.99044 * 82.43729 * 16 15 14 33 33 H 1.08998 * 110.99521 * 206.22131 * 16 15 14 34 34 H 1.09003 * 109.46503 * 56.41094 * 19 17 13 35 35 H 1.09004 * 109.46766 * 176.40853 * 19 17 13 36 36 H 1.00911 * 110.99319 * 307.16548 * 20 19 17 37 37 H 1.08998 * 109.47689 * 179.97438 * 21 20 19 38 38 H 1.09005 * 109.46892 * 299.99877 * 21 20 19 39 39 H 1.09003 * 109.47361 * 59.98954 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6175 1.9772 0.8507 5 6 3.5436 1.4436 0.1023 6 1 4.1405 1.8107 -0.7195 7 6 4.1572 0.9761 1.2451 8 7 3.4303 0.5287 2.2457 9 14 6.0209 0.9769 1.3717 10 1 6.4770 2.2653 1.9525 11 1 6.4582 -0.1420 2.2446 12 1 6.6090 0.8081 0.0186 13 7 1.6336 2.1056 -1.2462 14 6 1.8638 1.2302 -2.4100 15 6 0.5119 1.0705 -3.1366 16 6 -0.2845 2.3181 -2.6714 17 6 0.2017 2.4720 -1.2087 18 1 -0.3462 1.7949 -0.5534 19 6 0.0343 3.9192 -0.7412 20 7 0.5237 4.0481 0.6379 21 6 0.3086 5.4087 1.1479 22 1 -0.3633 -1.0073 0.2032 23 1 -0.3633 0.3277 -0.9739 24 1 -0.3633 0.6797 0.7709 25 1 1.8934 -0.5139 0.8898 26 1 1.8933 -0.5138 -0.8900 27 1 3.8620 0.1994 3.0495 28 1 2.5928 1.6871 -3.0793 29 1 2.2228 0.2565 -2.0764 30 1 0.6514 1.0834 -4.2176 31 1 0.0127 0.1531 -2.8248 32 1 -0.0204 3.1934 -3.2648 33 1 -1.3579 2.1326 -2.7092 34 1 0.6061 4.5799 -1.3929 35 1 -1.0199 4.1938 -0.7798 36 1 0.0915 3.3636 1.2403 37 1 0.6795 5.4764 2.1706 38 1 0.8432 6.1210 0.5193 39 1 -0.7568 5.6385 1.1321 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000169282758.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:59 Heat of formation + Delta-G solvation = 25.761481 kcal Electronic energy + Delta-G solvation = -17279.250918 eV Core-core repulsion = 14836.517475 eV Total energy + Delta-G solvation = -2442.733443 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.19542 -35.22252 -33.75161 -31.45610 -29.74517 -29.53123 -26.14991 -25.34753 -22.99130 -22.66817 -20.90042 -19.62504 -18.73290 -16.14840 -15.92355 -15.29607 -14.63224 -14.14249 -14.03445 -13.34085 -13.10975 -12.88693 -12.58230 -12.04169 -11.96503 -11.60926 -11.52696 -11.14370 -11.11074 -10.80812 -10.70381 -10.54671 -10.34999 -10.21976 -10.17771 -9.83735 -9.53245 -9.19181 -8.68227 -8.18675 -7.71908 -6.81762 -5.84606 -3.83488 3.41549 3.47357 3.51327 4.56069 4.71796 5.05616 5.25323 5.40312 5.47507 5.59352 5.72572 5.76184 5.89870 5.98374 6.04482 6.08211 6.10660 6.18863 6.25212 6.28048 6.30366 6.40070 6.46465 6.66085 6.73963 6.85347 6.93606 7.17844 7.38955 7.57114 7.65156 7.79856 7.93998 8.04744 8.42653 8.61940 8.83062 9.23061 9.79385 11.23847 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.022630 B = 0.010783 C = 0.008940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.993792 B = 2596.068762 C = 3131.098748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.155 4.155 3 C 0.213 3.787 4 H 0.063 0.937 5 C -0.483 4.483 6 H 0.056 0.944 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.277 1.277 13 N -0.501 5.501 14 C 0.038 3.962 15 C -0.142 4.142 16 C -0.122 4.122 17 C 0.041 3.959 18 H 0.079 0.921 19 C 0.081 3.919 20 N -0.671 5.671 21 C 0.033 3.967 22 H 0.029 0.971 23 H 0.052 0.948 24 H 0.045 0.955 25 H 0.086 0.914 26 H 0.043 0.957 27 H 0.256 0.744 28 H 0.055 0.945 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.013 0.987 36 H 0.338 0.662 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.460 3.033 -5.765 10.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.194 4.194 3 C 0.107 3.893 4 H 0.080 0.920 5 C -0.522 4.522 6 H 0.075 0.925 7 C -0.143 4.143 8 N -0.538 5.538 9 Si 0.719 3.281 10 H -0.209 1.209 11 H -0.217 1.217 12 H -0.202 1.202 13 N -0.224 5.224 14 C -0.090 4.090 15 C -0.181 4.181 16 C -0.161 4.161 17 C -0.068 4.068 18 H 0.096 0.904 19 C -0.049 4.049 20 N -0.302 5.302 21 C -0.117 4.117 22 H 0.048 0.952 23 H 0.070 0.930 24 H 0.064 0.936 25 H 0.104 0.896 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.031 0.969 36 H 0.156 0.844 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges -7.459 3.544 -5.805 10.094 hybrid contribution -0.385 -0.756 0.407 0.941 sum -7.844 2.788 -5.397 9.921 Atomic orbital electron populations 1.22277 0.99976 0.99173 1.00112 1.22361 0.91476 1.03418 1.02178 1.19519 0.95222 0.87523 0.87073 0.91961 1.21099 0.91167 1.39177 1.00724 0.92547 1.24871 0.97614 0.95961 0.95848 1.69911 1.34517 1.43686 1.05656 0.86632 0.86528 0.77289 0.77675 1.20920 1.21691 1.20185 1.63676 1.13726 1.40901 1.04146 1.22863 0.95004 0.98054 0.93108 1.22855 0.97881 0.97581 0.99760 1.22652 0.98428 0.98268 0.96758 1.23235 0.92448 0.95719 0.95420 0.90413 1.21933 0.95123 0.97450 0.90382 1.60272 1.63123 1.03928 1.02833 1.22142 0.97403 0.91596 1.00553 0.95150 0.92975 0.93625 0.89593 0.93857 0.93403 0.92619 0.91150 0.92182 0.92033 0.91435 0.92329 0.91219 0.96879 0.84405 0.91889 0.92219 0.97435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.03 8.15 37.16 0.30 -2.73 16 2 C -0.16 -3.57 4.86 -26.73 -0.13 -3.70 16 3 C 0.21 5.21 1.69 -68.86 -0.12 5.09 16 4 H 0.06 1.66 6.04 -51.93 -0.31 1.34 16 5 C -0.48 -13.41 8.34 -34.44 -0.29 -13.70 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.20 16 7 C 0.06 1.59 5.31 -17.82 -0.09 1.50 16 8 N -0.90 -25.73 11.73 55.43 0.65 -25.08 16 9 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 10 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 N -0.50 -10.64 4.69 -216.84 -1.02 -11.66 16 14 C 0.04 0.73 5.88 -2.84 -0.02 0.72 16 15 C -0.14 -2.21 6.32 -24.91 -0.16 -2.37 16 16 C -0.12 -1.83 6.31 -24.59 -0.16 -1.99 16 17 C 0.04 0.72 1.88 -66.18 -0.12 0.59 16 18 H 0.08 1.41 3.47 -51.93 -0.18 1.23 16 19 C 0.08 1.36 5.39 -3.82 -0.02 1.34 16 20 N -0.67 -12.19 5.52 -121.13 -0.67 -12.86 16 21 C 0.03 0.50 10.70 60.06 0.64 1.14 16 22 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.05 0.91 3.54 -51.93 -0.18 0.73 16 24 H 0.04 0.87 7.32 -51.93 -0.38 0.49 16 25 H 0.09 2.26 6.44 -51.93 -0.33 1.92 16 26 H 0.04 0.99 5.44 -51.93 -0.28 0.71 16 27 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.06 1.08 8.14 -51.92 -0.42 0.66 16 29 H 0.07 1.48 4.88 -51.93 -0.25 1.23 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.94 6.86 -51.93 -0.36 0.58 16 32 H 0.07 0.98 8.06 -51.93 -0.42 0.56 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 36 H 0.34 6.14 8.14 -39.29 -0.32 5.82 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.01 0.10 8.14 -51.93 -0.42 -0.33 16 LS Contribution 287.18 15.07 4.33 4.33 Total: -1.00 -28.58 287.18 -8.26 -36.84 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -6.37 Total: 5.58 kcal Atomic # 6 Polarization: -13.95 SS G_CDS: -0.16 Total: -14.10 kcal Atomic # 7 Polarization: -48.56 SS G_CDS: -1.03 Total: -49.60 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -28.58 -8.26 -36.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169282758.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.603 kcal (2) G-P(sol) polarization free energy of solvation -28.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds