Wall clock time and date at job start Mon Mar 30 2020 03:07:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.52998 * 109.47337 * 2 1
4 4 H 1.09006 * 109.46894 * 55.87124 * 3 2 1
5 5 C 1.50703 * 109.47169 * 175.87114 * 3 2 1
6 6 H 1.08001 * 120.00298 * 114.45110 * 5 3 2
7 7 C 1.37880 * 119.99744 * 294.45367 * 5 3 2
8 8 N 1.31511 * 120.00147 * 0.02562 * 7 5 3
9 9 Si 1.86803 * 119.99845 * 179.97438 * 7 5 3
10 10 H 1.48503 * 109.46843 * 90.00010 * 9 7 5
11 11 H 1.48494 * 109.47050 * 209.99994 * 9 7 5
12 12 H 1.48500 * 109.47219 * 330.00303 * 9 7 5
13 13 N 1.46899 * 109.47368 * 295.86839 * 3 2 1
14 14 C 1.47435 * 111.00149 * 315.44914 * 13 3 2
15 15 C 1.54314 * 107.24153 * 123.25487 * 14 13 3
16 16 C 1.55144 * 103.01795 * 22.28062 * 15 14 13
17 17 C 1.47849 * 110.99604 * 76.28500 * 13 3 2
18 18 H 1.08996 * 110.37375 * 332.46661 * 17 13 3
19 19 C 1.53007 * 110.37173 * 94.80687 * 17 13 3
20 20 N 1.46897 * 109.47271 * 296.41252 * 19 17 13
21 21 C 1.46892 * 111.00226 * 183.21657 * 20 19 17
22 22 H 1.08997 * 109.47132 * 191.40611 * 1 2 3
23 23 H 1.08994 * 109.47321 * 71.40190 * 1 2 3
24 24 H 1.09004 * 109.46753 * 311.40068 * 1 2 3
25 25 H 1.08994 * 109.47424 * 120.00787 * 2 1 3
26 26 H 1.09004 * 109.46983 * 240.00112 * 2 1 3
27 27 H 0.97000 * 120.00063 * 179.97438 * 8 7 5
28 28 H 1.09007 * 109.88784 * 242.66293 * 14 13 3
29 29 H 1.09004 * 109.89200 * 3.84355 * 14 13 3
30 30 H 1.08999 * 110.71091 * 140.65968 * 15 14 13
31 31 H 1.09000 * 110.70477 * 263.72644 * 15 14 13
32 32 H 1.08994 * 110.99044 * 82.43729 * 16 15 14
33 33 H 1.08998 * 110.99521 * 206.22131 * 16 15 14
34 34 H 1.09003 * 109.46503 * 56.41094 * 19 17 13
35 35 H 1.09004 * 109.46766 * 176.40853 * 19 17 13
36 36 H 1.00911 * 110.99319 * 307.16548 * 20 19 17
37 37 H 1.08998 * 109.47689 * 179.97438 * 21 20 19
38 38 H 1.09005 * 109.46892 * 299.99877 * 21 20 19
39 39 H 1.09003 * 109.47361 * 59.98954 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 1 1.6175 1.9772 0.8507
5 6 3.5436 1.4436 0.1023
6 1 4.1405 1.8107 -0.7195
7 6 4.1572 0.9761 1.2451
8 7 3.4303 0.5287 2.2457
9 14 6.0209 0.9769 1.3717
10 1 6.4770 2.2653 1.9525
11 1 6.4582 -0.1420 2.2446
12 1 6.6090 0.8081 0.0186
13 7 1.6336 2.1056 -1.2462
14 6 1.8638 1.2302 -2.4100
15 6 0.5119 1.0705 -3.1366
16 6 -0.2845 2.3181 -2.6714
17 6 0.2017 2.4720 -1.2087
18 1 -0.3462 1.7949 -0.5534
19 6 0.0343 3.9192 -0.7412
20 7 0.5237 4.0481 0.6379
21 6 0.3086 5.4087 1.1479
22 1 -0.3633 -1.0073 0.2032
23 1 -0.3633 0.3277 -0.9739
24 1 -0.3633 0.6797 0.7709
25 1 1.8934 -0.5139 0.8898
26 1 1.8933 -0.5138 -0.8900
27 1 3.8620 0.1994 3.0495
28 1 2.5928 1.6871 -3.0793
29 1 2.2228 0.2565 -2.0764
30 1 0.6514 1.0834 -4.2176
31 1 0.0127 0.1531 -2.8248
32 1 -0.0204 3.1934 -3.2648
33 1 -1.3579 2.1326 -2.7092
34 1 0.6061 4.5799 -1.3929
35 1 -1.0199 4.1938 -0.7798
36 1 0.0915 3.3636 1.2403
37 1 0.6795 5.4764 2.1706
38 1 0.8432 6.1210 0.5193
39 1 -0.7568 5.6385 1.1321
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000169282758.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:07:59
Heat of formation + Delta-G solvation = 25.761481 kcal
Electronic energy + Delta-G solvation = -17279.250918 eV
Core-core repulsion = 14836.517475 eV
Total energy + Delta-G solvation = -2442.733443 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-39.19542 -35.22252 -33.75161 -31.45610 -29.74517 -29.53123 -26.14991 -25.34753
-22.99130 -22.66817 -20.90042 -19.62504 -18.73290 -16.14840 -15.92355 -15.29607
-14.63224 -14.14249 -14.03445 -13.34085 -13.10975 -12.88693 -12.58230 -12.04169
-11.96503 -11.60926 -11.52696 -11.14370 -11.11074 -10.80812 -10.70381 -10.54671
-10.34999 -10.21976 -10.17771 -9.83735 -9.53245 -9.19181 -8.68227 -8.18675
-7.71908 -6.81762 -5.84606 -3.83488 3.41549 3.47357 3.51327 4.56069
4.71796 5.05616 5.25323 5.40312 5.47507 5.59352 5.72572 5.76184
5.89870 5.98374 6.04482 6.08211 6.10660 6.18863 6.25212 6.28048
6.30366 6.40070 6.46465 6.66085 6.73963 6.85347 6.93606 7.17844
7.38955 7.57114 7.65156 7.79856 7.93998 8.04744 8.42653 8.61940
8.83062 9.23061 9.79385 11.23847
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.022630 B = 0.010783 C = 0.008940
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1236.993792 B = 2596.068762 C = 3131.098748
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.159 4.159
2 C -0.155 4.155
3 C 0.213 3.787
4 H 0.063 0.937
5 C -0.483 4.483
6 H 0.056 0.944
7 C 0.057 3.943
8 N -0.897 5.897
9 Si 0.890 3.110
10 H -0.283 1.283
11 H -0.291 1.291
12 H -0.277 1.277
13 N -0.501 5.501
14 C 0.038 3.962
15 C -0.142 4.142
16 C -0.122 4.122
17 C 0.041 3.959
18 H 0.079 0.921
19 C 0.081 3.919
20 N -0.671 5.671
21 C 0.033 3.967
22 H 0.029 0.971
23 H 0.052 0.948
24 H 0.045 0.955
25 H 0.086 0.914
26 H 0.043 0.957
27 H 0.256 0.744
28 H 0.055 0.945
29 H 0.071 0.929
30 H 0.059 0.941
31 H 0.061 0.939
32 H 0.067 0.933
33 H 0.058 0.942
34 H 0.069 0.931
35 H 0.013 0.987
36 H 0.338 0.662
37 H 0.062 0.938
38 H 0.059 0.941
39 H 0.007 0.993
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.460 3.033 -5.765 10.677
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.215 4.215
2 C -0.194 4.194
3 C 0.107 3.893
4 H 0.080 0.920
5 C -0.522 4.522
6 H 0.075 0.925
7 C -0.143 4.143
8 N -0.538 5.538
9 Si 0.719 3.281
10 H -0.209 1.209
11 H -0.217 1.217
12 H -0.202 1.202
13 N -0.224 5.224
14 C -0.090 4.090
15 C -0.181 4.181
16 C -0.161 4.161
17 C -0.068 4.068
18 H 0.096 0.904
19 C -0.049 4.049
20 N -0.302 5.302
21 C -0.117 4.117
22 H 0.048 0.952
23 H 0.070 0.930
24 H 0.064 0.936
25 H 0.104 0.896
26 H 0.061 0.939
27 H 0.066 0.934
28 H 0.074 0.926
29 H 0.089 0.911
30 H 0.078 0.922
31 H 0.080 0.920
32 H 0.086 0.914
33 H 0.077 0.923
34 H 0.088 0.912
35 H 0.031 0.969
36 H 0.156 0.844
37 H 0.081 0.919
38 H 0.078 0.922
39 H 0.026 0.974
Dipole moment (debyes) X Y Z Total
from point charges -7.459 3.544 -5.805 10.094
hybrid contribution -0.385 -0.756 0.407 0.941
sum -7.844 2.788 -5.397 9.921
Atomic orbital electron populations
1.22277 0.99976 0.99173 1.00112 1.22361 0.91476 1.03418 1.02178
1.19519 0.95222 0.87523 0.87073 0.91961 1.21099 0.91167 1.39177
1.00724 0.92547 1.24871 0.97614 0.95961 0.95848 1.69911 1.34517
1.43686 1.05656 0.86632 0.86528 0.77289 0.77675 1.20920 1.21691
1.20185 1.63676 1.13726 1.40901 1.04146 1.22863 0.95004 0.98054
0.93108 1.22855 0.97881 0.97581 0.99760 1.22652 0.98428 0.98268
0.96758 1.23235 0.92448 0.95719 0.95420 0.90413 1.21933 0.95123
0.97450 0.90382 1.60272 1.63123 1.03928 1.02833 1.22142 0.97403
0.91596 1.00553 0.95150 0.92975 0.93625 0.89593 0.93857 0.93403
0.92619 0.91150 0.92182 0.92033 0.91435 0.92329 0.91219 0.96879
0.84405 0.91889 0.92219 0.97435
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.03 8.15 37.16 0.30 -2.73 16
2 C -0.16 -3.57 4.86 -26.73 -0.13 -3.70 16
3 C 0.21 5.21 1.69 -68.86 -0.12 5.09 16
4 H 0.06 1.66 6.04 -51.93 -0.31 1.34 16
5 C -0.48 -13.41 8.34 -34.44 -0.29 -13.70 16
6 H 0.06 1.62 7.81 -52.49 -0.41 1.20 16
7 C 0.06 1.59 5.31 -17.82 -0.09 1.50 16
8 N -0.90 -25.73 11.73 55.43 0.65 -25.08 16
9 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16
10 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16
11 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16
12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16
13 N -0.50 -10.64 4.69 -216.84 -1.02 -11.66 16
14 C 0.04 0.73 5.88 -2.84 -0.02 0.72 16
15 C -0.14 -2.21 6.32 -24.91 -0.16 -2.37 16
16 C -0.12 -1.83 6.31 -24.59 -0.16 -1.99 16
17 C 0.04 0.72 1.88 -66.18 -0.12 0.59 16
18 H 0.08 1.41 3.47 -51.93 -0.18 1.23 16
19 C 0.08 1.36 5.39 -3.82 -0.02 1.34 16
20 N -0.67 -12.19 5.52 -121.13 -0.67 -12.86 16
21 C 0.03 0.50 10.70 60.06 0.64 1.14 16
22 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16
23 H 0.05 0.91 3.54 -51.93 -0.18 0.73 16
24 H 0.04 0.87 7.32 -51.93 -0.38 0.49 16
25 H 0.09 2.26 6.44 -51.93 -0.33 1.92 16
26 H 0.04 0.99 5.44 -51.93 -0.28 0.71 16
27 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16
28 H 0.06 1.08 8.14 -51.92 -0.42 0.66 16
29 H 0.07 1.48 4.88 -51.93 -0.25 1.23 16
30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16
31 H 0.06 0.94 6.86 -51.93 -0.36 0.58 16
32 H 0.07 0.98 8.06 -51.93 -0.42 0.56 16
33 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16
34 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16
35 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16
36 H 0.34 6.14 8.14 -39.29 -0.32 5.82 16
37 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16
38 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16
39 H 0.01 0.10 8.14 -51.93 -0.42 -0.33 16
LS Contribution 287.18 15.07 4.33 4.33
Total: -1.00 -28.58 287.18 -8.26 -36.84
By element:
Atomic # 1 Polarization: 11.95 SS G_CDS: -6.37 Total: 5.58 kcal
Atomic # 6 Polarization: -13.95 SS G_CDS: -0.16 Total: -14.10 kcal
Atomic # 7 Polarization: -48.56 SS G_CDS: -1.03 Total: -49.60 kcal
Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal
Total LS contribution 4.33 Total: 4.33 kcal
Total: -28.58 -8.26 -36.84 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000169282758.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 62.603 kcal
(2) G-P(sol) polarization free energy of solvation -28.585 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.018 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.256 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.841 kcal
(6) G-S(sol) free energy of system = (1) + (5) 25.761 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds