Wall clock time and date at job start Mon Mar 30 2020 03:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47337 * 2 1 4 4 H 1.09006 * 109.46894 * 55.87124 * 3 2 1 5 5 C 1.50703 * 109.47169 * 175.87114 * 3 2 1 6 6 H 1.08001 * 120.00298 * 114.45110 * 5 3 2 7 7 C 1.37880 * 119.99744 * 294.45367 * 5 3 2 8 8 N 1.31511 * 120.00147 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99845 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46843 * 90.00010 * 9 7 5 11 11 H 1.48494 * 109.47050 * 209.99994 * 9 7 5 12 12 H 1.48500 * 109.47219 * 330.00303 * 9 7 5 13 13 N 1.46899 * 109.47368 * 295.86839 * 3 2 1 14 14 C 1.47435 * 111.00149 * 315.44914 * 13 3 2 15 15 C 1.54314 * 107.24153 * 123.25487 * 14 13 3 16 16 C 1.55144 * 103.01795 * 22.28062 * 15 14 13 17 17 C 1.47849 * 110.99604 * 76.28500 * 13 3 2 18 18 H 1.08996 * 110.37375 * 332.46661 * 17 13 3 19 19 C 1.53007 * 110.37173 * 94.80687 * 17 13 3 20 20 N 1.46897 * 109.47271 * 296.41252 * 19 17 13 21 21 C 1.46892 * 111.00226 * 183.21657 * 20 19 17 22 22 H 1.08997 * 109.47132 * 191.40611 * 1 2 3 23 23 H 1.08994 * 109.47321 * 71.40190 * 1 2 3 24 24 H 1.09004 * 109.46753 * 311.40068 * 1 2 3 25 25 H 1.08994 * 109.47424 * 120.00787 * 2 1 3 26 26 H 1.09004 * 109.46983 * 240.00112 * 2 1 3 27 27 H 0.97000 * 120.00063 * 179.97438 * 8 7 5 28 28 H 1.09007 * 109.88784 * 242.66293 * 14 13 3 29 29 H 1.09004 * 109.89200 * 3.84355 * 14 13 3 30 30 H 1.08999 * 110.71091 * 140.65968 * 15 14 13 31 31 H 1.09000 * 110.70477 * 263.72644 * 15 14 13 32 32 H 1.08994 * 110.99044 * 82.43729 * 16 15 14 33 33 H 1.08998 * 110.99521 * 206.22131 * 16 15 14 34 34 H 1.09003 * 109.46503 * 56.41094 * 19 17 13 35 35 H 1.09004 * 109.46766 * 176.40853 * 19 17 13 36 36 H 1.00911 * 110.99319 * 307.16548 * 20 19 17 37 37 H 1.08998 * 109.47689 * 179.97438 * 21 20 19 38 38 H 1.09005 * 109.46892 * 299.99877 * 21 20 19 39 39 H 1.09003 * 109.47361 * 59.98954 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6175 1.9772 0.8507 5 6 3.5436 1.4436 0.1023 6 1 4.1405 1.8107 -0.7195 7 6 4.1572 0.9761 1.2451 8 7 3.4303 0.5287 2.2457 9 14 6.0209 0.9769 1.3717 10 1 6.4770 2.2653 1.9525 11 1 6.4582 -0.1420 2.2446 12 1 6.6090 0.8081 0.0186 13 7 1.6336 2.1056 -1.2462 14 6 1.8638 1.2302 -2.4100 15 6 0.5119 1.0705 -3.1366 16 6 -0.2845 2.3181 -2.6714 17 6 0.2017 2.4720 -1.2087 18 1 -0.3462 1.7949 -0.5534 19 6 0.0343 3.9192 -0.7412 20 7 0.5237 4.0481 0.6379 21 6 0.3086 5.4087 1.1479 22 1 -0.3633 -1.0073 0.2032 23 1 -0.3633 0.3277 -0.9739 24 1 -0.3633 0.6797 0.7709 25 1 1.8934 -0.5139 0.8898 26 1 1.8933 -0.5138 -0.8900 27 1 3.8620 0.1994 3.0495 28 1 2.5928 1.6871 -3.0793 29 1 2.2228 0.2565 -2.0764 30 1 0.6514 1.0834 -4.2176 31 1 0.0127 0.1531 -2.8248 32 1 -0.0204 3.1934 -3.2648 33 1 -1.3579 2.1326 -2.7092 34 1 0.6061 4.5799 -1.3929 35 1 -1.0199 4.1938 -0.7798 36 1 0.0915 3.3636 1.2403 37 1 0.6795 5.4764 2.1706 38 1 0.8432 6.1210 0.5193 39 1 -0.7568 5.6385 1.1321 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000169282758.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:59 Heat of formation + Delta-G solvation = 6.171577 kcal Electronic energy + Delta-G solvation = -17280.100400 eV Core-core repulsion = 14836.517475 eV Total energy + Delta-G solvation = -2443.582925 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.71929 -36.61304 -35.50206 -33.37660 -31.31302 -30.91009 -28.05493 -26.65828 -24.78077 -24.13454 -22.32930 -21.10673 -20.39201 -18.00053 -17.69864 -16.73674 -16.34203 -15.79638 -15.39402 -14.80201 -14.68552 -14.34085 -14.12285 -13.57410 -13.50178 -13.18192 -12.96305 -12.90337 -12.73775 -12.52692 -12.41364 -12.07469 -11.91561 -11.88656 -11.53902 -11.49419 -11.36183 -10.78656 -10.64580 -10.28659 -9.03951 -8.45664 -7.98550 -6.03575 1.42080 1.43641 1.52599 2.50167 3.30689 3.41544 3.63223 3.97863 4.10485 4.28052 4.39455 4.49106 4.53848 4.55990 4.65022 4.71675 4.77301 4.78932 4.87904 4.95500 5.04760 5.06548 5.07951 5.19079 5.28074 5.33172 5.42436 5.54560 5.60805 5.75039 5.91256 5.97302 6.31594 6.46611 6.58987 6.83166 7.01396 7.12890 7.63648 9.07589 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.022630 B = 0.010783 C = 0.008940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.993792 B = 2596.068762 C = 3131.098748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.148 4.148 3 C 0.224 3.776 4 H 0.039 0.961 5 C -0.500 4.500 6 H 0.038 0.962 7 C 0.013 3.987 8 N -0.919 5.919 9 Si 0.944 3.056 10 H -0.282 1.282 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.518 5.518 14 C 0.034 3.966 15 C -0.132 4.132 16 C -0.113 4.113 17 C 0.035 3.965 18 H 0.076 0.924 19 C 0.086 3.914 20 N -0.702 5.702 21 C 0.036 3.964 22 H 0.044 0.956 23 H 0.073 0.927 24 H 0.042 0.958 25 H 0.048 0.952 26 H 0.041 0.959 27 H 0.256 0.744 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.059 0.941 35 H 0.041 0.959 36 H 0.334 0.666 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.901 3.376 -7.000 12.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.187 4.187 3 C 0.116 3.884 4 H 0.057 0.943 5 C -0.539 4.539 6 H 0.057 0.943 7 C -0.185 4.185 8 N -0.560 5.560 9 Si 0.772 3.228 10 H -0.208 1.208 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.242 5.242 14 C -0.094 4.094 15 C -0.171 4.171 16 C -0.151 4.151 17 C -0.074 4.074 18 H 0.093 0.907 19 C -0.044 4.044 20 N -0.333 5.333 21 C -0.114 4.114 22 H 0.063 0.937 23 H 0.092 0.908 24 H 0.061 0.939 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.102 0.898 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.107 0.893 34 H 0.077 0.923 35 H 0.059 0.941 36 H 0.151 0.849 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -8.907 3.897 -7.055 12.012 hybrid contribution 0.084 -0.826 0.774 1.135 sum -8.822 3.071 -6.281 11.257 Atomic orbital electron populations 1.22142 0.96717 1.00159 1.01297 1.22161 0.94373 1.02016 1.00162 1.19180 0.93140 0.88144 0.87937 0.94300 1.21411 0.93346 1.38902 1.00210 0.94333 1.25507 1.01314 0.95905 0.95737 1.70023 1.35768 1.44274 1.05890 0.85776 0.82204 0.77249 0.77621 1.20827 1.21094 1.19938 1.63530 1.16566 1.40905 1.03194 1.22847 0.97381 0.96388 0.92808 1.22787 0.95290 0.98224 1.00750 1.22648 0.99986 0.98139 0.94354 1.23361 0.90273 0.96142 0.97575 0.90658 1.21890 0.96427 0.96616 0.89446 1.60257 1.64185 1.05238 1.03599 1.22133 0.98863 0.90097 1.00257 0.93728 0.90823 0.93859 0.93331 0.94099 0.93525 0.93390 0.93381 0.89773 0.91409 0.90731 0.89331 0.92273 0.94137 0.84854 0.92105 0.92257 0.95122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.41 8.15 71.98 0.59 -4.82 16 2 C -0.15 -6.88 4.86 30.59 0.15 -6.73 16 3 C 0.22 11.11 1.69 44.17 0.07 11.18 16 4 H 0.04 2.12 6.04 -2.38 -0.01 2.11 16 5 C -0.50 -28.50 8.34 25.60 0.21 -28.29 16 6 H 0.04 2.27 7.81 -2.91 -0.02 2.25 16 7 C 0.01 0.74 5.31 84.66 0.45 1.19 16 8 N -0.92 -53.90 11.73 21.45 0.25 -53.65 16 9 Si 0.94 45.86 29.54 68.60 2.03 47.88 16 10 H -0.28 -13.58 7.11 99.48 0.71 -12.88 16 11 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 12 H -0.27 -13.10 7.11 99.48 0.71 -12.39 16 13 N -0.52 -21.85 4.69 -839.97 -3.94 -25.79 16 14 C 0.03 1.29 5.88 86.65 0.51 1.79 16 15 C -0.13 -3.70 6.32 31.78 0.20 -3.50 16 16 C -0.11 -2.95 6.31 31.98 0.20 -2.75 16 17 C 0.03 1.17 1.88 45.39 0.09 1.25 16 18 H 0.08 2.58 3.47 -2.39 -0.01 2.57 16 19 C 0.09 2.73 5.39 86.31 0.47 3.19 16 20 N -0.70 -25.10 5.52 -537.14 -2.96 -28.06 16 21 C 0.04 1.04 10.70 127.69 1.37 2.40 16 22 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 23 H 0.07 2.39 3.54 -2.39 -0.01 2.38 16 24 H 0.04 1.61 7.32 -2.39 -0.02 1.59 16 25 H 0.05 2.61 6.44 -2.39 -0.02 2.60 16 26 H 0.04 1.89 5.44 -2.38 -0.01 1.88 16 27 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 28 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 29 H 0.05 2.04 4.88 -2.38 -0.01 2.03 16 30 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.07 1.83 6.86 -2.39 -0.02 1.81 16 32 H 0.07 1.88 8.06 -2.39 -0.02 1.86 16 33 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 36 H 0.33 12.10 8.14 -89.69 -0.73 11.37 16 37 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 39 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -62.39 287.18 -0.02 -62.41 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: 0.30 Total: 22.28 kcal Atomic # 6 Polarization: -29.38 SS G_CDS: 4.30 Total: -25.08 kcal Atomic # 7 Polarization: -100.85 SS G_CDS: -6.65 Total: -107.50 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.88 kcal Total: -62.39 -0.02 -62.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169282758.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.579 kcal (2) G-P(sol) polarization free energy of solvation -62.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds