Wall clock time and date at job start Mon Mar 30 2020 03:08:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.52998 * 109.47270 * 2 1
4 4 H 1.09000 * 109.46954 * 56.55494 * 3 2 1
5 5 C 1.50702 * 109.46902 * 176.55360 * 3 2 1
6 6 H 1.08003 * 120.00000 * 120.00600 * 5 3 2
7 7 C 1.37878 * 120.00102 * 299.99904 * 5 3 2
8 8 N 1.31513 * 119.99983 * 359.97438 * 7 5 3
9 9 Si 1.86800 * 120.00023 * 180.02562 * 7 5 3
10 10 H 1.48497 * 109.47004 * 60.00263 * 9 7 5
11 11 H 1.48503 * 109.46840 * 179.97438 * 9 7 5
12 12 H 1.48489 * 109.47323 * 299.99880 * 9 7 5
13 13 N 1.46897 * 109.47472 * 296.55189 * 3 2 1
14 14 C 1.46843 * 111.00551 * 174.65609 * 13 3 2
15 15 C 1.53167 * 109.56103 * 185.84279 * 14 13 3
16 16 C 1.53120 * 109.20758 * 300.85826 * 15 14 13
17 17 C 1.53120 * 109.21145 * 57.62121 * 16 15 14
18 18 H 1.08994 * 109.50247 * 62.25824 * 17 16 15
19 19 C 1.53005 * 109.50165 * 182.37880 * 17 16 15
20 20 N 1.46904 * 109.46887 * 294.99825 * 19 17 16
21 21 C 1.46854 * 110.99848 * 298.86404 * 13 3 2
22 22 H 1.09000 * 109.47027 * 65.06418 * 1 2 3
23 23 H 1.08994 * 109.47375 * 185.06549 * 1 2 3
24 24 H 1.09004 * 109.47187 * 305.06793 * 1 2 3
25 25 H 1.09000 * 109.46946 * 240.00278 * 2 1 3
26 26 H 1.09004 * 109.47287 * 120.00241 * 2 1 3
27 27 H 0.96998 * 120.00499 * 179.97438 * 8 7 5
28 28 H 1.09009 * 109.45793 * 305.85674 * 14 13 3
29 29 H 1.09001 * 109.46462 * 65.81533 * 14 13 3
30 30 H 1.08997 * 109.59172 * 180.90421 * 15 14 13
31 31 H 1.09005 * 109.48710 * 60.74450 * 15 14 13
32 32 H 1.08999 * 109.51969 * 297.69176 * 16 15 14
33 33 H 1.08993 * 109.52476 * 177.56000 * 16 15 14
34 34 H 1.08992 * 109.47472 * 54.99630 * 19 17 16
35 35 H 1.08997 * 109.46937 * 175.00201 * 19 17 16
36 36 H 1.00911 * 110.99782 * 56.05005 * 20 19 17
37 37 H 1.00899 * 111.00146 * 180.02562 * 20 19 17
38 38 H 1.09001 * 109.46319 * 54.14336 * 21 13 3
39 39 H 1.08992 * 109.46183 * 294.17411 * 21 13 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6271 1.9738 0.8575
5 6 3.5446 1.4432 0.0854
6 1 4.1299 1.8949 -0.7019
7 6 4.1739 0.8674 1.1687
8 7 3.4611 0.3179 2.1276
9 14 6.0389 0.8690 1.2749
10 1 6.5334 2.2692 1.2753
11 1 6.4639 0.1941 2.5275
12 1 6.6018 0.1455 0.1067
13 7 1.6196 2.1106 -1.2389
14 6 1.9820 3.5334 -1.2187
15 6 1.4028 4.2278 -2.4549
16 6 1.9568 3.5574 -3.7152
17 6 1.6074 2.0668 -3.6880
18 1 0.5241 1.9468 -3.6972
19 6 2.2089 1.3788 -4.9152
20 7 1.5742 1.9043 -6.1314
21 6 2.1806 1.4365 -2.4168
22 1 -0.3633 0.4333 -0.9319
23 1 -0.3634 -1.0236 0.0907
24 1 -0.3634 0.5905 0.8411
25 1 1.8933 -0.5138 -0.8900
26 1 1.8933 -0.5139 0.8900
27 1 3.9038 -0.0875 2.8896
28 1 1.5785 3.9982 -0.3190
29 1 3.0676 3.6318 -1.2223
30 1 1.6850 5.2805 -2.4487
31 1 0.3162 4.1417 -2.4447
32 1 3.0398 3.6771 -3.7452
33 1 1.5146 4.0192 -4.5978
34 1 3.2807 1.5730 -4.9518
35 1 2.0362 0.3045 -4.8504
36 1 1.6647 2.9081 -6.1816
37 1 1.9543 1.4649 -6.9564
38 1 1.9213 0.3782 -2.3874
39 1 3.2651 1.5447 -2.4149
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000217559611.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:08:08
Heat of formation + Delta-G solvation = -35.388600 kcal
Electronic energy + Delta-G solvation = -16935.795555 eV
Core-core repulsion = 14490.410445 eV
Total energy + Delta-G solvation = -2445.385109 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-40.27577 -37.15881 -35.11089 -33.72117 -31.93339 -31.35279 -28.42902 -25.92688
-25.30871 -24.13303 -22.16661 -20.95751 -20.53178 -18.29174 -17.35252 -16.65042
-16.32321 -15.82006 -15.36606 -15.02289 -14.89559 -14.64821 -14.28863 -14.12047
-13.66129 -13.29576 -13.04971 -12.95036 -12.74056 -12.64461 -12.37525 -12.11193
-11.91641 -11.63353 -11.57517 -11.48423 -11.19450 -10.94412 -10.75777 -10.42678
-9.56604 -8.88640 -8.02654 -6.26336 1.35570 1.36151 1.43631 2.38348
3.14052 3.34774 3.81966 3.92437 4.00836 4.15511 4.44100 4.54245
4.59399 4.60229 4.72999 4.74428 4.78389 4.86230 4.93186 5.01819
5.06166 5.10433 5.20397 5.27510 5.36246 5.40823 5.45260 5.50808
5.58115 5.65327 5.80167 6.07052 6.22633 6.26806 6.41468 6.66347
6.73986 6.96037 7.44389 8.91209
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.025551 B = 0.008784 C = 0.008060
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1095.596784 B = 3186.745892 C = 3473.240529
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.124 4.124
2 C -0.107 4.107
3 C 0.219 3.781
4 H 0.001 0.999
5 C -0.551 4.551
6 H 0.046 0.954
7 C 0.021 3.979
8 N -0.911 5.911
9 Si 0.944 3.056
10 H -0.276 1.276
11 H -0.282 1.282
12 H -0.274 1.274
13 N -0.529 5.529
14 C 0.062 3.938
15 C -0.106 4.106
16 C -0.107 4.107
17 C -0.075 4.075
18 H 0.074 0.926
19 C 0.074 3.926
20 N -0.850 5.850
21 C 0.074 3.926
22 H 0.055 0.945
23 H 0.045 0.955
24 H 0.033 0.967
25 H 0.032 0.968
26 H 0.061 0.939
27 H 0.262 0.738
28 H 0.050 0.950
29 H 0.011 0.989
30 H 0.077 0.923
31 H 0.068 0.932
32 H 0.047 0.953
33 H 0.084 0.916
34 H 0.023 0.977
35 H 0.066 0.934
36 H 0.346 0.654
37 H 0.349 0.651
38 H 0.058 0.942
39 H 0.010 0.990
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.629 4.212 -12.310 13.274
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.181 4.181
2 C -0.145 4.145
3 C 0.112 3.888
4 H 0.019 0.981
5 C -0.590 4.590
6 H 0.065 0.935
7 C -0.179 4.179
8 N -0.550 5.550
9 Si 0.770 3.230
10 H -0.202 1.202
11 H -0.207 1.207
12 H -0.199 1.199
13 N -0.253 5.253
14 C -0.067 4.067
15 C -0.144 4.144
16 C -0.145 4.145
17 C -0.094 4.094
18 H 0.092 0.908
19 C -0.058 4.058
20 N -0.382 5.382
21 C -0.055 4.055
22 H 0.074 0.926
23 H 0.064 0.936
24 H 0.052 0.948
25 H 0.051 0.949
26 H 0.080 0.920
27 H 0.071 0.929
28 H 0.068 0.932
29 H 0.029 0.971
30 H 0.096 0.904
31 H 0.087 0.913
32 H 0.066 0.934
33 H 0.102 0.898
34 H 0.041 0.959
35 H 0.084 0.916
36 H 0.160 0.840
37 H 0.163 0.837
38 H 0.076 0.924
39 H 0.028 0.972
Dipole moment (debyes) X Y Z Total
from point charges -3.801 3.790 -11.854 13.012
hybrid contribution 3.084 0.151 0.575 3.140
sum -0.717 3.941 -11.279 11.969
Atomic orbital electron populations
1.21547 0.96217 0.99617 1.00746 1.21463 0.94528 0.98185 1.00323
1.19045 0.91514 0.91438 0.86798 0.98077 1.21933 0.94103 1.37245
1.05715 0.93546 1.25607 1.01834 0.94972 0.95438 1.69989 1.36415
1.38514 1.10072 0.85830 0.81547 0.78142 0.77432 1.20151 1.20715
1.19944 1.62321 1.58205 1.01904 1.02857 1.21920 0.96900 0.89586
0.98276 1.21562 1.00813 0.98747 0.93236 1.21569 0.99876 0.94813
0.98217 1.21132 1.00664 0.95183 0.92449 0.90782 1.21634 0.95088
0.99169 0.89898 1.58696 1.64195 1.11055 1.04244 1.21847 0.95569
0.97887 0.90148 0.92594 0.93614 0.94813 0.94942 0.92005 0.92896
0.93181 0.97104 0.90437 0.91324 0.93406 0.89780 0.95892 0.91574
0.84040 0.83734 0.92384 0.97194
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -5.07 9.72 71.98 0.70 -4.37 16
2 C -0.11 -5.17 5.02 30.59 0.15 -5.02 16
3 C 0.22 11.15 1.76 44.17 0.08 11.23 16
4 H 0.00 0.08 8.07 -2.39 -0.02 0.06 16
5 C -0.55 -30.20 7.19 25.60 0.18 -30.02 16
6 H 0.05 2.57 5.84 -2.91 -0.02 2.55 16
7 C 0.02 1.18 5.30 84.65 0.45 1.63 16
8 N -0.91 -52.51 11.30 21.45 0.24 -52.26 16
9 Si 0.94 43.92 29.54 68.60 2.03 45.95 16
10 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16
11 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16
12 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16
13 N -0.53 -22.55 4.12 -875.24 -3.61 -26.16 16
14 C 0.06 2.42 5.13 86.37 0.44 2.87 16
15 C -0.11 -3.09 6.11 30.69 0.19 -2.91 16
16 C -0.11 -2.85 4.99 30.67 0.15 -2.70 16
17 C -0.08 -2.25 2.56 -10.74 -0.03 -2.27 16
18 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16
19 C 0.07 1.87 6.25 86.30 0.54 2.41 16
20 N -0.85 -17.27 9.62 -186.71 -1.80 -19.07 16
21 C 0.07 2.89 4.08 86.32 0.35 3.24 16
22 H 0.06 2.17 7.85 -2.39 -0.02 2.15 16
23 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16
24 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16
25 H 0.03 1.54 6.13 -2.39 -0.01 1.53 16
26 H 0.06 3.38 5.99 -2.38 -0.01 3.37 16
27 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16
28 H 0.05 2.03 8.07 -2.38 -0.02 2.01 16
29 H 0.01 0.46 6.99 -2.39 -0.02 0.45 16
30 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16
31 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16
32 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16
33 H 0.08 1.77 6.80 -2.39 -0.02 1.76 16
34 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16
35 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16
36 H 0.35 6.12 7.30 -89.69 -0.66 5.47 16
37 H 0.35 5.65 9.08 -89.69 -0.81 4.84 16
38 H 0.06 2.36 5.97 -2.39 -0.01 2.35 16
39 H 0.01 0.43 6.61 -2.39 -0.02 0.41 16
Total: -1.00 -59.51 292.15 -0.36 -59.87
By element:
Atomic # 1 Polarization: 18.01 SS G_CDS: -0.44 Total: 17.57 kcal
Atomic # 6 Polarization: -29.11 SS G_CDS: 3.21 Total: -25.90 kcal
Atomic # 7 Polarization: -92.33 SS G_CDS: -5.16 Total: -97.49 kcal
Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal
Total: -59.51 -0.36 -59.87 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000217559611.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 24.484 kcal
(2) G-P(sol) polarization free energy of solvation -59.508 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.024 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.364 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.872 kcal
(6) G-S(sol) free energy of system = (1) + (5) -35.389 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds