Wall clock time and date at job start Mon Mar 30 2020 03:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47270 * 2 1 4 4 H 1.09000 * 109.46954 * 56.55494 * 3 2 1 5 5 C 1.50702 * 109.46902 * 176.55360 * 3 2 1 6 6 H 1.08003 * 120.00000 * 120.00600 * 5 3 2 7 7 C 1.37878 * 120.00102 * 299.99904 * 5 3 2 8 8 N 1.31513 * 119.99983 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00023 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47004 * 60.00263 * 9 7 5 11 11 H 1.48503 * 109.46840 * 179.97438 * 9 7 5 12 12 H 1.48489 * 109.47323 * 299.99880 * 9 7 5 13 13 N 1.46897 * 109.47472 * 296.55189 * 3 2 1 14 14 C 1.46843 * 111.00551 * 174.65609 * 13 3 2 15 15 C 1.53167 * 109.56103 * 185.84279 * 14 13 3 16 16 C 1.53120 * 109.20758 * 300.85826 * 15 14 13 17 17 C 1.53120 * 109.21145 * 57.62121 * 16 15 14 18 18 H 1.08994 * 109.50247 * 62.25824 * 17 16 15 19 19 C 1.53005 * 109.50165 * 182.37880 * 17 16 15 20 20 N 1.46904 * 109.46887 * 294.99825 * 19 17 16 21 21 C 1.46854 * 110.99848 * 298.86404 * 13 3 2 22 22 H 1.09000 * 109.47027 * 65.06418 * 1 2 3 23 23 H 1.08994 * 109.47375 * 185.06549 * 1 2 3 24 24 H 1.09004 * 109.47187 * 305.06793 * 1 2 3 25 25 H 1.09000 * 109.46946 * 240.00278 * 2 1 3 26 26 H 1.09004 * 109.47287 * 120.00241 * 2 1 3 27 27 H 0.96998 * 120.00499 * 179.97438 * 8 7 5 28 28 H 1.09009 * 109.45793 * 305.85674 * 14 13 3 29 29 H 1.09001 * 109.46462 * 65.81533 * 14 13 3 30 30 H 1.08997 * 109.59172 * 180.90421 * 15 14 13 31 31 H 1.09005 * 109.48710 * 60.74450 * 15 14 13 32 32 H 1.08999 * 109.51969 * 297.69176 * 16 15 14 33 33 H 1.08993 * 109.52476 * 177.56000 * 16 15 14 34 34 H 1.08992 * 109.47472 * 54.99630 * 19 17 16 35 35 H 1.08997 * 109.46937 * 175.00201 * 19 17 16 36 36 H 1.00911 * 110.99782 * 56.05005 * 20 19 17 37 37 H 1.00899 * 111.00146 * 180.02562 * 20 19 17 38 38 H 1.09001 * 109.46319 * 54.14336 * 21 13 3 39 39 H 1.08992 * 109.46183 * 294.17411 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6271 1.9738 0.8575 5 6 3.5446 1.4432 0.0854 6 1 4.1299 1.8949 -0.7019 7 6 4.1739 0.8674 1.1687 8 7 3.4611 0.3179 2.1276 9 14 6.0389 0.8690 1.2749 10 1 6.5334 2.2692 1.2753 11 1 6.4639 0.1941 2.5275 12 1 6.6018 0.1455 0.1067 13 7 1.6196 2.1106 -1.2389 14 6 1.9820 3.5334 -1.2187 15 6 1.4028 4.2278 -2.4549 16 6 1.9568 3.5574 -3.7152 17 6 1.6074 2.0668 -3.6880 18 1 0.5241 1.9468 -3.6972 19 6 2.2089 1.3788 -4.9152 20 7 1.5742 1.9043 -6.1314 21 6 2.1806 1.4365 -2.4168 22 1 -0.3633 0.4333 -0.9319 23 1 -0.3634 -1.0236 0.0907 24 1 -0.3634 0.5905 0.8411 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 3.9038 -0.0875 2.8896 28 1 1.5785 3.9982 -0.3190 29 1 3.0676 3.6318 -1.2223 30 1 1.6850 5.2805 -2.4487 31 1 0.3162 4.1417 -2.4447 32 1 3.0398 3.6771 -3.7452 33 1 1.5146 4.0192 -4.5978 34 1 3.2807 1.5730 -4.9518 35 1 2.0362 0.3045 -4.8504 36 1 1.6647 2.9081 -6.1816 37 1 1.9543 1.4649 -6.9564 38 1 1.9213 0.3782 -2.3874 39 1 3.2651 1.5447 -2.4149 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000217559611.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:08 Heat of formation + Delta-G solvation = -35.388600 kcal Electronic energy + Delta-G solvation = -16935.795555 eV Core-core repulsion = 14490.410445 eV Total energy + Delta-G solvation = -2445.385109 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.27577 -37.15881 -35.11089 -33.72117 -31.93339 -31.35279 -28.42902 -25.92688 -25.30871 -24.13303 -22.16661 -20.95751 -20.53178 -18.29174 -17.35252 -16.65042 -16.32321 -15.82006 -15.36606 -15.02289 -14.89559 -14.64821 -14.28863 -14.12047 -13.66129 -13.29576 -13.04971 -12.95036 -12.74056 -12.64461 -12.37525 -12.11193 -11.91641 -11.63353 -11.57517 -11.48423 -11.19450 -10.94412 -10.75777 -10.42678 -9.56604 -8.88640 -8.02654 -6.26336 1.35570 1.36151 1.43631 2.38348 3.14052 3.34774 3.81966 3.92437 4.00836 4.15511 4.44100 4.54245 4.59399 4.60229 4.72999 4.74428 4.78389 4.86230 4.93186 5.01819 5.06166 5.10433 5.20397 5.27510 5.36246 5.40823 5.45260 5.50808 5.58115 5.65327 5.80167 6.07052 6.22633 6.26806 6.41468 6.66347 6.73986 6.96037 7.44389 8.91209 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.025551 B = 0.008784 C = 0.008060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.596784 B = 3186.745892 C = 3473.240529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.107 4.107 3 C 0.219 3.781 4 H 0.001 0.999 5 C -0.551 4.551 6 H 0.046 0.954 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 0.944 3.056 10 H -0.276 1.276 11 H -0.282 1.282 12 H -0.274 1.274 13 N -0.529 5.529 14 C 0.062 3.938 15 C -0.106 4.106 16 C -0.107 4.107 17 C -0.075 4.075 18 H 0.074 0.926 19 C 0.074 3.926 20 N -0.850 5.850 21 C 0.074 3.926 22 H 0.055 0.945 23 H 0.045 0.955 24 H 0.033 0.967 25 H 0.032 0.968 26 H 0.061 0.939 27 H 0.262 0.738 28 H 0.050 0.950 29 H 0.011 0.989 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.047 0.953 33 H 0.084 0.916 34 H 0.023 0.977 35 H 0.066 0.934 36 H 0.346 0.654 37 H 0.349 0.651 38 H 0.058 0.942 39 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.629 4.212 -12.310 13.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.145 4.145 3 C 0.112 3.888 4 H 0.019 0.981 5 C -0.590 4.590 6 H 0.065 0.935 7 C -0.179 4.179 8 N -0.550 5.550 9 Si 0.770 3.230 10 H -0.202 1.202 11 H -0.207 1.207 12 H -0.199 1.199 13 N -0.253 5.253 14 C -0.067 4.067 15 C -0.144 4.144 16 C -0.145 4.145 17 C -0.094 4.094 18 H 0.092 0.908 19 C -0.058 4.058 20 N -0.382 5.382 21 C -0.055 4.055 22 H 0.074 0.926 23 H 0.064 0.936 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.029 0.971 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.066 0.934 33 H 0.102 0.898 34 H 0.041 0.959 35 H 0.084 0.916 36 H 0.160 0.840 37 H 0.163 0.837 38 H 0.076 0.924 39 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges -3.801 3.790 -11.854 13.012 hybrid contribution 3.084 0.151 0.575 3.140 sum -0.717 3.941 -11.279 11.969 Atomic orbital electron populations 1.21547 0.96217 0.99617 1.00746 1.21463 0.94528 0.98185 1.00323 1.19045 0.91514 0.91438 0.86798 0.98077 1.21933 0.94103 1.37245 1.05715 0.93546 1.25607 1.01834 0.94972 0.95438 1.69989 1.36415 1.38514 1.10072 0.85830 0.81547 0.78142 0.77432 1.20151 1.20715 1.19944 1.62321 1.58205 1.01904 1.02857 1.21920 0.96900 0.89586 0.98276 1.21562 1.00813 0.98747 0.93236 1.21569 0.99876 0.94813 0.98217 1.21132 1.00664 0.95183 0.92449 0.90782 1.21634 0.95088 0.99169 0.89898 1.58696 1.64195 1.11055 1.04244 1.21847 0.95569 0.97887 0.90148 0.92594 0.93614 0.94813 0.94942 0.92005 0.92896 0.93181 0.97104 0.90437 0.91324 0.93406 0.89780 0.95892 0.91574 0.84040 0.83734 0.92384 0.97194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.07 9.72 71.98 0.70 -4.37 16 2 C -0.11 -5.17 5.02 30.59 0.15 -5.02 16 3 C 0.22 11.15 1.76 44.17 0.08 11.23 16 4 H 0.00 0.08 8.07 -2.39 -0.02 0.06 16 5 C -0.55 -30.20 7.19 25.60 0.18 -30.02 16 6 H 0.05 2.57 5.84 -2.91 -0.02 2.55 16 7 C 0.02 1.18 5.30 84.65 0.45 1.63 16 8 N -0.91 -52.51 11.30 21.45 0.24 -52.26 16 9 Si 0.94 43.92 29.54 68.60 2.03 45.95 16 10 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 12 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 13 N -0.53 -22.55 4.12 -875.24 -3.61 -26.16 16 14 C 0.06 2.42 5.13 86.37 0.44 2.87 16 15 C -0.11 -3.09 6.11 30.69 0.19 -2.91 16 16 C -0.11 -2.85 4.99 30.67 0.15 -2.70 16 17 C -0.08 -2.25 2.56 -10.74 -0.03 -2.27 16 18 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 19 C 0.07 1.87 6.25 86.30 0.54 2.41 16 20 N -0.85 -17.27 9.62 -186.71 -1.80 -19.07 16 21 C 0.07 2.89 4.08 86.32 0.35 3.24 16 22 H 0.06 2.17 7.85 -2.39 -0.02 2.15 16 23 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 25 H 0.03 1.54 6.13 -2.39 -0.01 1.53 16 26 H 0.06 3.38 5.99 -2.38 -0.01 3.37 16 27 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 28 H 0.05 2.03 8.07 -2.38 -0.02 2.01 16 29 H 0.01 0.46 6.99 -2.39 -0.02 0.45 16 30 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 32 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.08 1.77 6.80 -2.39 -0.02 1.76 16 34 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.35 6.12 7.30 -89.69 -0.66 5.47 16 37 H 0.35 5.65 9.08 -89.69 -0.81 4.84 16 38 H 0.06 2.36 5.97 -2.39 -0.01 2.35 16 39 H 0.01 0.43 6.61 -2.39 -0.02 0.41 16 Total: -1.00 -59.51 292.15 -0.36 -59.87 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -0.44 Total: 17.57 kcal Atomic # 6 Polarization: -29.11 SS G_CDS: 3.21 Total: -25.90 kcal Atomic # 7 Polarization: -92.33 SS G_CDS: -5.16 Total: -97.49 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -59.51 -0.36 -59.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217559611.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.484 kcal (2) G-P(sol) polarization free energy of solvation -59.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds