Wall clock time and date at job start Mon Mar 30 2020 03:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46717 * 2 1 4 4 H 1.09002 * 109.47395 * 323.67379 * 3 2 1 5 5 C 1.50703 * 109.46980 * 203.67194 * 3 2 1 6 6 H 1.07997 * 119.99986 * 245.06089 * 5 3 2 7 7 C 1.37875 * 119.99472 * 65.06568 * 5 3 2 8 8 N 1.31518 * 119.99887 * 196.08304 * 7 5 3 9 9 Si 1.86798 * 120.00456 * 16.08334 * 7 5 3 10 10 H 1.48501 * 109.47058 * 92.87667 * 9 7 5 11 11 H 1.48500 * 109.47459 * 212.87416 * 9 7 5 12 12 H 1.48499 * 109.47085 * 332.87763 * 9 7 5 13 13 N 1.46902 * 109.46950 * 83.67535 * 3 2 1 14 14 C 1.46845 * 111.00010 * 302.62380 * 13 3 2 15 15 C 1.53034 * 109.52422 * 185.84602 * 14 13 3 16 16 C 1.53123 * 109.27680 * 300.82099 * 15 14 13 17 17 C 1.53120 * 109.16314 * 57.65295 * 16 15 14 18 18 H 1.09000 * 109.50007 * 62.32595 * 17 16 15 19 19 C 1.52997 * 109.50443 * 182.40812 * 17 16 15 20 20 N 1.46897 * 109.47187 * 294.91849 * 19 17 16 21 21 C 1.46842 * 111.00006 * 66.87779 * 13 3 2 22 22 H 1.08995 * 109.47171 * 68.10432 * 1 2 3 23 23 H 1.09008 * 109.46592 * 188.09945 * 1 2 3 24 24 H 1.08999 * 109.47388 * 308.09688 * 1 2 3 25 25 H 1.08998 * 109.47277 * 240.00142 * 2 1 3 26 26 H 1.08997 * 109.47148 * 119.99596 * 2 1 3 27 27 H 0.96999 * 120.00050 * 180.02562 * 8 7 5 28 28 H 1.08997 * 109.46144 * 65.82411 * 14 13 3 29 29 H 1.09005 * 109.46460 * 305.85403 * 14 13 3 30 30 H 1.08999 * 109.50725 * 180.88463 * 15 14 13 31 31 H 1.08997 * 109.50829 * 60.75590 * 15 14 13 32 32 H 1.08997 * 109.52094 * 297.75229 * 16 15 14 33 33 H 1.08994 * 109.57701 * 177.59103 * 16 15 14 34 34 H 1.08997 * 109.47021 * 54.92255 * 19 17 16 35 35 H 1.09007 * 109.46638 * 174.92334 * 19 17 16 36 36 H 1.00904 * 111.00355 * 180.02562 * 20 19 17 37 37 H 1.00900 * 110.99950 * 303.96048 * 20 19 17 38 38 H 1.09003 * 109.49557 * 54.15908 * 21 13 3 39 39 H 1.08993 * 109.42758 * 294.19639 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.3804 2.0611 -0.6088 5 6 3.4342 1.4825 -0.5705 6 1 4.2653 1.7740 0.0546 7 6 3.6488 1.1469 -1.8904 8 7 4.8647 0.8728 -2.3100 9 14 2.2125 1.0815 -3.0830 10 1 2.0725 2.3949 -3.7617 11 1 2.4582 0.0244 -4.0965 12 1 0.9649 0.7735 -2.3388 13 7 2.0593 1.9551 1.3766 14 6 0.7264 1.8732 1.9874 15 6 0.7512 2.5462 3.3615 16 6 1.7838 1.8456 4.2490 17 6 3.1538 1.9028 3.5675 18 1 3.4623 2.9424 3.4575 19 6 4.1798 1.1527 4.4192 20 7 4.3559 1.8496 5.7003 21 6 3.0598 1.2491 2.1869 22 1 -0.3633 0.3832 -0.9535 23 1 -0.3633 -1.0175 0.1448 24 1 -0.3634 0.6340 0.8087 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 5.0158 0.6371 -3.2387 28 1 0.4424 0.8269 2.1004 29 1 0.0023 2.3789 1.3484 30 1 -0.2342 2.4715 3.8213 31 1 1.0218 3.5960 3.2478 32 1 1.4927 0.8054 4.3948 33 1 1.8362 2.3480 5.2148 34 1 3.8270 0.1379 4.6030 35 1 5.1328 1.1161 3.8914 36 1 5.0297 1.3735 6.2813 37 1 4.6205 2.8123 5.5548 38 1 4.0304 1.3016 1.6935 39 1 2.7653 0.2056 2.2985 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000217559697.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:10 Heat of formation + Delta-G solvation = 1.514966 kcal Electronic energy + Delta-G solvation = -16986.773456 eV Core-core repulsion = 14542.988605 eV Total energy + Delta-G solvation = -2443.784851 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.07390 -35.87412 -33.57961 -32.01216 -30.84410 -29.86642 -27.39927 -24.39307 -23.64337 -22.31188 -20.96680 -19.82406 -18.96431 -16.73352 -15.92334 -15.09027 -14.58704 -14.36408 -14.32465 -13.96685 -13.62577 -12.91842 -12.76898 -12.67740 -12.37522 -11.86366 -11.57427 -11.46922 -11.41559 -10.87920 -10.72350 -10.50053 -10.37647 -10.19878 -9.99513 -9.87264 -9.54967 -9.41355 -9.02287 -8.56472 -8.33462 -7.16794 -6.08746 -4.01877 3.30336 3.39978 3.43182 4.44481 4.60244 4.90372 5.20756 5.23537 5.31594 5.42420 5.60952 5.79973 5.84839 5.88342 5.96068 6.02395 6.07235 6.12664 6.19113 6.27477 6.32042 6.43812 6.53461 6.57697 6.64743 6.71771 6.83018 6.85780 6.93906 7.07237 7.20170 7.39740 7.49650 7.64790 8.04394 8.22905 8.68934 9.00941 9.57476 11.03289 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.031030 B = 0.008992 C = 0.007545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.142200 B = 3113.229238 C = 3710.236207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.152 4.152 3 C 0.191 3.809 4 H 0.037 0.963 5 C -0.512 4.512 6 H 0.081 0.919 7 C 0.076 3.924 8 N -0.893 5.893 9 Si 0.858 3.142 10 H -0.281 1.281 11 H -0.290 1.290 12 H -0.249 1.249 13 N -0.521 5.521 14 C 0.045 3.955 15 C -0.119 4.119 16 C -0.101 4.101 17 C -0.084 4.084 18 H 0.071 0.929 19 C 0.065 3.935 20 N -0.850 5.850 21 C 0.066 3.934 22 H 0.048 0.952 23 H 0.035 0.965 24 H 0.067 0.933 25 H 0.059 0.941 26 H 0.050 0.950 27 H 0.263 0.737 28 H 0.037 0.963 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.049 0.951 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.029 0.971 36 H 0.336 0.664 37 H 0.338 0.662 38 H 0.091 0.909 39 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.562 0.433 11.228 12.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.191 4.191 3 C 0.083 3.917 4 H 0.055 0.945 5 C -0.550 4.550 6 H 0.099 0.901 7 C -0.127 4.127 8 N -0.531 5.531 9 Si 0.685 3.315 10 H -0.207 1.207 11 H -0.217 1.217 12 H -0.173 1.173 13 N -0.244 5.244 14 C -0.083 4.083 15 C -0.157 4.157 16 C -0.139 4.139 17 C -0.103 4.103 18 H 0.090 0.910 19 C -0.066 4.066 20 N -0.379 5.379 21 C -0.062 4.062 22 H 0.067 0.933 23 H 0.055 0.945 24 H 0.085 0.915 25 H 0.078 0.922 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.055 0.945 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.047 0.953 36 H 0.147 0.853 37 H 0.150 0.850 38 H 0.109 0.891 39 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -6.094 0.709 11.152 12.729 hybrid contribution 0.111 -0.890 -1.213 1.509 sum -5.983 -0.182 9.939 11.603 Atomic orbital electron populations 1.22477 0.98391 1.00409 1.01946 1.22539 0.93324 1.01990 1.01280 1.19688 0.97635 0.88941 0.85448 0.94546 1.20986 0.91880 1.45924 0.96192 0.90126 1.24866 0.95299 0.94255 0.98237 1.69973 1.21001 1.45630 1.16494 0.87240 0.85057 0.77823 0.81427 1.20687 1.21665 1.17264 1.62038 1.03488 1.56008 1.02886 1.22377 0.92789 0.98297 0.94818 1.21650 0.98117 1.00449 0.95494 1.21463 0.94343 0.99876 0.98220 1.21228 0.94598 1.00052 0.94405 0.91018 1.21812 0.97778 0.97871 0.89115 1.58751 1.55345 1.06634 1.17146 1.22020 0.98460 0.94205 0.91533 0.93296 0.94536 0.91475 0.92204 0.93183 0.92760 0.94541 0.91768 0.92724 0.91711 0.93201 0.91706 0.91454 0.95273 0.85299 0.84960 0.89101 0.95887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.22 9.18 37.16 0.34 -2.88 16 2 C -0.15 -3.28 4.06 -26.73 -0.11 -3.39 16 3 C 0.19 4.44 1.63 -68.86 -0.11 4.32 16 4 H 0.04 0.89 6.51 -51.93 -0.34 0.55 16 5 C -0.51 -14.02 8.40 -34.44 -0.29 -14.31 16 6 H 0.08 2.39 6.25 -52.49 -0.33 2.06 16 7 C 0.08 2.14 5.15 -17.82 -0.09 2.05 16 8 N -0.89 -26.86 13.96 55.43 0.77 -26.08 16 9 Si 0.86 20.99 25.85 -169.99 -4.39 16.59 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.25 -5.68 4.31 56.52 0.24 -5.44 16 13 N -0.52 -10.71 4.69 -228.08 -1.07 -11.78 16 14 C 0.05 0.79 3.70 -3.84 -0.01 0.77 16 15 C -0.12 -1.77 6.09 -26.65 -0.16 -1.93 16 16 C -0.10 -1.48 5.14 -26.61 -0.14 -1.61 16 17 C -0.08 -1.31 2.49 -90.54 -0.23 -1.54 16 18 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 19 C 0.07 0.90 6.18 -3.83 -0.02 0.87 16 20 N -0.85 -9.76 9.13 -10.37 -0.09 -9.86 16 21 C 0.07 1.28 4.13 -3.84 -0.02 1.26 16 22 H 0.05 0.92 6.72 -51.93 -0.35 0.57 16 23 H 0.04 0.60 8.14 -51.92 -0.42 0.18 16 24 H 0.07 1.14 3.94 -51.93 -0.20 0.93 16 25 H 0.06 1.40 5.71 -51.93 -0.30 1.10 16 26 H 0.05 1.06 5.98 -51.93 -0.31 0.75 16 27 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 28 H 0.04 0.63 5.60 -51.93 -0.29 0.34 16 29 H 0.06 1.10 7.54 -51.93 -0.39 0.71 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.90 7.83 -51.93 -0.41 0.49 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.34 3.20 9.08 -39.29 -0.36 2.85 16 37 H 0.34 3.62 8.99 -39.29 -0.35 3.26 16 38 H 0.09 2.01 5.79 -51.93 -0.30 1.71 16 39 H 0.02 0.45 6.40 -51.93 -0.33 0.12 16 LS Contribution 279.94 15.07 4.22 4.22 Total: -1.00 -28.91 279.94 -7.92 -36.83 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -6.51 Total: 6.46 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: -0.84 Total: -16.38 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: -0.39 Total: -47.72 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.39 Total: 16.59 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -28.91 -7.92 -36.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217559697.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.345 kcal (2) G-P(sol) polarization free energy of solvation -28.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds