Wall clock time and date at job start Mon Mar 30 2020 03:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46717 * 2 1 4 4 H 1.09002 * 109.47395 * 323.67379 * 3 2 1 5 5 C 1.50703 * 109.46980 * 203.67194 * 3 2 1 6 6 H 1.07997 * 119.99986 * 245.06089 * 5 3 2 7 7 C 1.37875 * 119.99472 * 65.06568 * 5 3 2 8 8 N 1.31518 * 119.99887 * 196.08304 * 7 5 3 9 9 Si 1.86798 * 120.00456 * 16.08334 * 7 5 3 10 10 H 1.48501 * 109.47058 * 92.87667 * 9 7 5 11 11 H 1.48500 * 109.47459 * 212.87416 * 9 7 5 12 12 H 1.48499 * 109.47085 * 332.87763 * 9 7 5 13 13 N 1.46902 * 109.46950 * 83.67535 * 3 2 1 14 14 C 1.46845 * 111.00010 * 302.62380 * 13 3 2 15 15 C 1.53034 * 109.52422 * 185.84602 * 14 13 3 16 16 C 1.53123 * 109.27680 * 300.82099 * 15 14 13 17 17 C 1.53120 * 109.16314 * 57.65295 * 16 15 14 18 18 H 1.09000 * 109.50007 * 62.32595 * 17 16 15 19 19 C 1.52997 * 109.50443 * 182.40812 * 17 16 15 20 20 N 1.46897 * 109.47187 * 294.91849 * 19 17 16 21 21 C 1.46842 * 111.00006 * 66.87779 * 13 3 2 22 22 H 1.08995 * 109.47171 * 68.10432 * 1 2 3 23 23 H 1.09008 * 109.46592 * 188.09945 * 1 2 3 24 24 H 1.08999 * 109.47388 * 308.09688 * 1 2 3 25 25 H 1.08998 * 109.47277 * 240.00142 * 2 1 3 26 26 H 1.08997 * 109.47148 * 119.99596 * 2 1 3 27 27 H 0.96999 * 120.00050 * 180.02562 * 8 7 5 28 28 H 1.08997 * 109.46144 * 65.82411 * 14 13 3 29 29 H 1.09005 * 109.46460 * 305.85403 * 14 13 3 30 30 H 1.08999 * 109.50725 * 180.88463 * 15 14 13 31 31 H 1.08997 * 109.50829 * 60.75590 * 15 14 13 32 32 H 1.08997 * 109.52094 * 297.75229 * 16 15 14 33 33 H 1.08994 * 109.57701 * 177.59103 * 16 15 14 34 34 H 1.08997 * 109.47021 * 54.92255 * 19 17 16 35 35 H 1.09007 * 109.46638 * 174.92334 * 19 17 16 36 36 H 1.00904 * 111.00355 * 180.02562 * 20 19 17 37 37 H 1.00900 * 110.99950 * 303.96048 * 20 19 17 38 38 H 1.09003 * 109.49557 * 54.15908 * 21 13 3 39 39 H 1.08993 * 109.42758 * 294.19639 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.3804 2.0611 -0.6088 5 6 3.4342 1.4825 -0.5705 6 1 4.2653 1.7740 0.0546 7 6 3.6488 1.1469 -1.8904 8 7 4.8647 0.8728 -2.3100 9 14 2.2125 1.0815 -3.0830 10 1 2.0725 2.3949 -3.7617 11 1 2.4582 0.0244 -4.0965 12 1 0.9649 0.7735 -2.3388 13 7 2.0593 1.9551 1.3766 14 6 0.7264 1.8732 1.9874 15 6 0.7512 2.5462 3.3615 16 6 1.7838 1.8456 4.2490 17 6 3.1538 1.9028 3.5675 18 1 3.4623 2.9424 3.4575 19 6 4.1798 1.1527 4.4192 20 7 4.3559 1.8496 5.7003 21 6 3.0598 1.2491 2.1869 22 1 -0.3633 0.3832 -0.9535 23 1 -0.3633 -1.0175 0.1448 24 1 -0.3634 0.6340 0.8087 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 5.0158 0.6371 -3.2387 28 1 0.4424 0.8269 2.1004 29 1 0.0023 2.3789 1.3484 30 1 -0.2342 2.4715 3.8213 31 1 1.0218 3.5960 3.2478 32 1 1.4927 0.8054 4.3948 33 1 1.8362 2.3480 5.2148 34 1 3.8270 0.1379 4.6030 35 1 5.1328 1.1161 3.8914 36 1 5.0297 1.3735 6.2813 37 1 4.6205 2.8123 5.5548 38 1 4.0304 1.3016 1.6935 39 1 2.7653 0.2056 2.2985 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000217559697.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:10 Heat of formation + Delta-G solvation = -20.459652 kcal Electronic energy + Delta-G solvation = -16987.726347 eV Core-core repulsion = 14542.988605 eV Total energy + Delta-G solvation = -2444.737742 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.57688 -37.29226 -35.04678 -33.92204 -32.32139 -31.18374 -29.22485 -25.71037 -25.29935 -23.89773 -22.32961 -21.39835 -20.46457 -18.70825 -17.43305 -16.58477 -15.99152 -15.87109 -15.60427 -15.42151 -15.12986 -14.69684 -14.31967 -14.16362 -13.82908 -13.28814 -13.14670 -13.09329 -12.86950 -12.59791 -12.31296 -12.18124 -11.99062 -11.58750 -11.47883 -11.42060 -11.29290 -11.01170 -10.79582 -10.46605 -9.56745 -8.79086 -8.27755 -6.24918 1.34292 1.38615 1.48432 2.37451 3.05155 3.24692 3.73773 3.95677 4.06591 4.15248 4.29439 4.37080 4.41908 4.48459 4.56449 4.60006 4.66980 4.78938 4.85405 4.92051 4.96565 5.07654 5.11724 5.19106 5.20746 5.26376 5.31005 5.33677 5.51229 5.56647 5.65811 5.70141 6.11490 6.21332 6.50778 6.64098 6.79813 6.83196 7.38290 8.87490 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.031030 B = 0.008992 C = 0.007545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.142200 B = 3113.229238 C = 3710.236207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.148 4.148 3 C 0.194 3.806 4 H 0.033 0.967 5 C -0.513 4.513 6 H 0.041 0.959 7 C 0.019 3.981 8 N -0.943 5.943 9 Si 0.921 3.079 10 H -0.280 1.280 11 H -0.292 1.292 12 H -0.221 1.221 13 N -0.536 5.536 14 C 0.043 3.957 15 C -0.114 4.114 16 C -0.093 4.093 17 C -0.076 4.076 18 H 0.061 0.939 19 C 0.072 3.928 20 N -0.844 5.844 21 C 0.075 3.925 22 H 0.047 0.953 23 H 0.058 0.942 24 H 0.084 0.916 25 H 0.037 0.963 26 H 0.048 0.952 27 H 0.263 0.737 28 H 0.043 0.957 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.016 0.984 36 H 0.349 0.651 37 H 0.344 0.656 38 H 0.048 0.952 39 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.334 0.412 12.703 15.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.188 4.188 3 C 0.086 3.914 4 H 0.050 0.950 5 C -0.551 4.551 6 H 0.059 0.941 7 C -0.179 4.179 8 N -0.583 5.583 9 Si 0.745 3.255 10 H -0.206 1.206 11 H -0.218 1.218 12 H -0.143 1.143 13 N -0.259 5.259 14 C -0.085 4.085 15 C -0.152 4.152 16 C -0.131 4.131 17 C -0.095 4.095 18 H 0.079 0.921 19 C -0.059 4.059 20 N -0.375 5.375 21 C -0.054 4.054 22 H 0.066 0.934 23 H 0.077 0.923 24 H 0.103 0.897 25 H 0.056 0.944 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.060 0.940 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.034 0.966 36 H 0.162 0.838 37 H 0.157 0.843 38 H 0.067 0.933 39 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -8.881 0.695 12.665 15.484 hybrid contribution 1.075 -0.855 -1.587 2.099 sum -7.806 -0.161 11.078 13.553 Atomic orbital electron populations 1.22407 0.95184 1.02340 1.02615 1.22383 0.96097 1.00090 1.00195 1.19506 0.94666 0.90202 0.87043 0.94954 1.21268 0.93237 1.44609 0.95964 0.94125 1.25692 0.97916 0.94151 1.00135 1.70115 1.23520 1.47768 1.16908 0.86233 0.82726 0.77584 0.78965 1.20604 1.21823 1.14319 1.61976 1.05753 1.56124 1.02060 1.22497 0.90672 0.99106 0.96182 1.21640 0.99774 0.99759 0.93982 1.21409 0.92933 1.00251 0.98499 1.21123 0.96533 0.99146 0.92691 0.92059 1.21647 0.96572 0.97932 0.89771 1.58698 1.56040 1.06988 1.15747 1.21874 0.96147 0.94368 0.93027 0.93388 0.92325 0.89748 0.94396 0.93333 0.92790 0.93953 0.91156 0.89713 0.92144 0.92895 0.90295 0.91228 0.96613 0.83765 0.84302 0.93306 0.96329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.62 9.18 71.98 0.66 -4.96 16 2 C -0.15 -6.21 4.06 30.60 0.12 -6.09 16 3 C 0.19 9.00 1.63 44.17 0.07 9.07 16 4 H 0.03 1.54 6.51 -2.39 -0.02 1.52 16 5 C -0.51 -29.15 8.40 25.60 0.21 -28.93 16 6 H 0.04 2.58 6.25 -2.91 -0.02 2.56 16 7 C 0.02 1.09 5.15 84.65 0.44 1.52 16 8 N -0.94 -59.05 13.96 21.45 0.30 -58.75 16 9 Si 0.92 43.71 25.85 68.60 1.77 45.49 16 10 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 11 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 12 H -0.22 -9.37 4.31 99.48 0.43 -8.94 16 13 N -0.54 -21.79 4.69 -875.52 -4.11 -25.89 16 14 C 0.04 1.37 3.70 86.32 0.32 1.69 16 15 C -0.11 -2.98 6.09 30.65 0.19 -2.80 16 16 C -0.09 -2.45 5.14 30.68 0.16 -2.29 16 17 C -0.08 -2.32 2.49 -10.74 -0.03 -2.35 16 18 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 19 C 0.07 1.93 6.18 86.30 0.53 2.47 16 20 N -0.84 -17.78 9.13 -186.72 -1.71 -19.49 16 21 C 0.07 2.92 4.13 86.33 0.36 3.28 16 22 H 0.05 1.61 6.72 -2.39 -0.02 1.59 16 23 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 24 H 0.08 2.52 3.94 -2.39 -0.01 2.51 16 25 H 0.04 1.74 5.71 -2.39 -0.01 1.72 16 26 H 0.05 2.02 5.98 -2.39 -0.01 2.01 16 27 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 28 H 0.04 1.32 5.60 -2.39 -0.01 1.31 16 29 H 0.07 2.17 7.54 -2.38 -0.02 2.15 16 30 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.08 1.90 7.83 -2.39 -0.02 1.89 16 34 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.02 0.46 8.14 -2.38 -0.02 0.44 16 36 H 0.35 5.95 9.08 -89.69 -0.81 5.14 16 37 H 0.34 6.75 8.99 -89.69 -0.81 5.95 16 38 H 0.05 2.31 5.79 -2.39 -0.01 2.29 16 39 H 0.02 0.74 6.40 -2.39 -0.02 0.72 16 Total: -1.00 -64.25 279.94 -1.56 -65.81 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: -0.85 Total: 22.22 kcal Atomic # 6 Polarization: -32.41 SS G_CDS: 3.03 Total: -29.38 kcal Atomic # 7 Polarization: -98.62 SS G_CDS: -5.51 Total: -104.13 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.77 Total: 45.49 kcal Total: -64.25 -1.56 -65.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217559697.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.350 kcal (2) G-P(sol) polarization free energy of solvation -64.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds