Wall clock time and date at job start Mon Mar 30 2020 03:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47226 * 2 1 4 4 N 1.46898 * 109.47102 * 119.99841 * 2 1 3 5 5 C 1.46955 * 110.99758 * 303.82151 * 4 2 1 6 6 C 1.53059 * 109.36311 * 176.83141 * 5 4 2 7 7 H 1.09006 * 109.48482 * 298.38932 * 6 5 4 8 8 C 1.50701 * 109.48895 * 178.34907 * 6 5 4 9 9 H 1.08002 * 119.99761 * 0.03749 * 8 6 5 10 10 C 1.37871 * 119.99694 * 180.32312 * 8 6 5 11 11 N 1.31514 * 120.00482 * 359.71466 * 10 8 6 12 12 Si 1.86801 * 119.99746 * 179.72062 * 10 8 6 13 13 H 1.48504 * 109.47266 * 60.00049 * 12 10 8 14 14 H 1.48504 * 109.46970 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.47383 * 299.99456 * 12 10 8 16 16 N 1.46957 * 109.38251 * 58.36608 * 6 5 4 17 17 C 1.46962 * 110.87920 * 300.69119 * 16 6 5 18 18 C 1.53002 * 109.48634 * 179.28576 * 17 16 6 19 19 C 1.52990 * 109.48929 * 299.32883 * 17 16 6 20 20 C 1.46957 * 111.00141 * 179.97438 * 4 2 1 21 21 H 1.09003 * 109.47041 * 300.00042 * 1 2 3 22 22 H 1.09003 * 109.47469 * 60.00153 * 1 2 3 23 23 H 1.08998 * 109.47755 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47041 * 239.99958 * 2 1 3 25 25 H 1.09003 * 109.47035 * 180.02562 * 3 2 1 26 26 H 1.09004 * 109.46416 * 299.99588 * 3 2 1 27 27 H 1.08994 * 109.47305 * 59.99773 * 3 2 1 28 28 H 1.09003 * 109.51031 * 56.86013 * 5 4 2 29 29 H 1.08991 * 109.47264 * 296.78927 * 5 4 2 30 30 H 0.96995 * 120.00207 * 179.97438 * 11 10 8 31 31 H 1.00902 * 110.99388 * 64.55892 * 16 6 5 32 32 H 1.08998 * 109.46939 * 59.99891 * 18 17 16 33 33 H 1.08992 * 109.47045 * 180.02562 * 18 17 16 34 34 H 1.09002 * 109.46909 * 300.00420 * 18 17 16 35 35 H 1.09007 * 109.47315 * 60.00187 * 19 17 16 36 36 H 1.09007 * 109.47485 * 180.02562 * 19 17 16 37 37 H 1.08997 * 109.47565 * 299.99961 * 19 17 16 38 38 H 1.08999 * 109.48583 * 63.22090 * 20 4 2 39 39 H 1.08996 * 109.48872 * 303.15457 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 1.4752 -0.0808 2.4197 6 6 1.9444 -0.8775 3.6395 7 1 1.5685 -1.8985 3.5736 8 6 1.4211 -0.2291 4.8952 9 1 0.8138 0.6617 4.8302 10 6 1.7223 -0.7697 6.1272 11 7 2.4617 -1.8544 6.2063 12 14 1.0800 0.0384 7.6840 13 1 -0.4046 0.0593 7.6547 14 1 1.5405 -0.7314 8.8675 15 1 1.5932 1.4294 7.7677 16 7 3.4135 -0.8971 3.6735 17 6 3.9574 -1.5091 2.4531 18 6 5.4862 -1.4971 2.5138 19 6 3.4624 -2.9524 2.3415 20 6 3.4887 -0.7126 1.2331 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6766 1.9562 -0.8901 27 1 1.6767 1.9564 0.8899 28 1 0.3860 -0.0898 2.3767 29 1 1.8278 0.9474 2.4993 30 1 2.6739 -2.2346 7.0731 31 1 3.7844 0.0314 3.8087 32 1 5.8197 -2.0630 3.3836 33 1 5.8894 -1.9506 1.6084 34 1 5.8386 -0.4686 2.5926 35 1 2.3732 -2.9606 2.2974 36 1 3.8663 -3.4062 1.4364 37 1 3.7951 -3.5190 3.2111 38 1 3.8649 0.3083 1.2992 39 1 3.8668 -1.1819 0.3249 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219508275.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:29 Heat of formation + Delta-G solvation = -13.589007 kcal Electronic energy + Delta-G solvation = -17270.740830 eV Core-core repulsion = 14826.301021 eV Total energy + Delta-G solvation = -2444.439808 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.79658 -37.19813 -35.15306 -32.86793 -31.58356 -28.82898 -28.07475 -27.95398 -26.83434 -25.06147 -22.63795 -20.54037 -19.59138 -18.36706 -16.93186 -16.32426 -16.13280 -15.85444 -15.63572 -14.99079 -14.76477 -14.43362 -13.97046 -13.88368 -13.21047 -13.14300 -12.86411 -12.79763 -12.69747 -12.62721 -12.49907 -12.36218 -12.25180 -11.88522 -11.84962 -11.64545 -11.41908 -11.25435 -10.81138 -10.43204 -9.12914 -8.41772 -7.91572 -6.13071 1.45419 1.45573 1.52788 2.48766 3.09513 3.27536 3.83676 3.96707 4.15795 4.22879 4.28563 4.36807 4.43480 4.53492 4.60056 4.74435 4.76339 4.82753 4.84301 4.95098 4.97157 5.02982 5.03886 5.14621 5.22725 5.24909 5.33154 5.39625 5.52615 5.62748 5.68177 5.79050 6.20479 6.34894 6.40539 6.73757 7.20948 7.22695 7.58626 9.10273 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.025482 B = 0.010133 C = 0.008116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.560810 B = 2762.617344 C = 3449.242774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.070 3.930 3 C -0.178 4.178 4 N -0.536 5.536 5 C 0.044 3.956 6 C 0.231 3.769 7 H 0.011 0.989 8 C -0.557 4.557 9 H 0.046 0.954 10 C 0.040 3.960 11 N -0.873 5.873 12 Si 0.943 3.057 13 H -0.275 1.275 14 H -0.287 1.287 15 H -0.275 1.275 16 N -0.654 5.654 17 C 0.098 3.902 18 C -0.124 4.124 19 C -0.107 4.107 20 C 0.039 3.961 21 H 0.042 0.958 22 H 0.078 0.922 23 H 0.054 0.946 24 H 0.090 0.910 25 H 0.053 0.947 26 H 0.077 0.923 27 H 0.039 0.961 28 H 0.060 0.940 29 H 0.012 0.988 30 H 0.253 0.747 31 H 0.311 0.689 32 H 0.047 0.953 33 H 0.075 0.925 34 H 0.050 0.950 35 H 0.040 0.960 36 H 0.063 0.937 37 H 0.030 0.970 38 H 0.026 0.974 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.805 3.152 -12.097 12.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.038 4.038 3 C -0.236 4.236 4 N -0.259 5.259 5 C -0.086 4.086 6 C 0.122 3.878 7 H 0.029 0.971 8 C -0.596 4.596 9 H 0.064 0.936 10 C -0.164 4.164 11 N -0.508 5.508 12 Si 0.770 3.230 13 H -0.201 1.201 14 H -0.213 1.213 15 H -0.200 1.200 16 N -0.282 5.282 17 C 0.007 3.993 18 C -0.182 4.182 19 C -0.165 4.165 20 C -0.091 4.091 21 H 0.061 0.939 22 H 0.097 0.903 23 H 0.073 0.927 24 H 0.108 0.892 25 H 0.072 0.928 26 H 0.096 0.904 27 H 0.058 0.942 28 H 0.079 0.921 29 H 0.031 0.969 30 H 0.062 0.938 31 H 0.127 0.873 32 H 0.066 0.934 33 H 0.094 0.906 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.082 0.918 37 H 0.049 0.951 38 H 0.044 0.956 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.759 1.913 -11.625 11.912 hybrid contribution -0.301 1.887 0.643 2.016 sum 1.459 3.800 -10.982 11.712 Atomic orbital electron populations 1.21841 0.94139 1.02001 1.01819 1.21838 0.96124 0.92586 0.93222 1.22382 1.01135 0.98016 1.02094 1.62364 1.08013 1.53454 1.02102 1.22743 0.99167 0.95396 0.91268 1.18891 0.84918 0.93950 0.90009 0.97088 1.21245 1.33641 1.12532 0.92197 0.93620 1.25592 0.94546 0.95074 1.01221 1.70238 1.35848 1.20642 1.24088 0.85888 0.78660 0.78638 0.79848 1.20051 1.21276 1.20036 1.60926 1.08442 1.24260 1.34622 1.21152 0.94881 0.94985 0.88330 1.21677 0.93302 1.01399 1.01825 1.21493 1.00523 0.94903 0.99541 1.22805 0.87906 0.98311 1.00105 0.93875 0.90267 0.92669 0.89208 0.92843 0.90401 0.94213 0.92122 0.96949 0.93771 0.87254 0.93424 0.90621 0.93082 0.94097 0.91785 0.95111 0.95603 0.89877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.70 8.84 71.98 0.64 -3.06 16 2 C 0.07 1.97 3.04 44.91 0.14 2.10 16 3 C -0.18 -4.57 8.50 71.98 0.61 -3.96 16 4 N -0.54 -18.89 4.05 -870.49 -3.53 -22.41 16 5 C 0.04 1.85 4.05 86.31 0.35 2.20 16 6 C 0.23 11.66 2.07 44.18 0.09 11.75 16 7 H 0.01 0.65 6.35 -2.38 -0.02 0.64 16 8 C -0.56 -30.95 8.69 25.60 0.22 -30.72 16 9 H 0.05 2.51 7.74 -2.91 -0.02 2.49 16 10 C 0.04 2.23 5.39 84.65 0.46 2.69 16 11 N -0.87 -51.33 12.77 21.45 0.27 -51.05 16 12 Si 0.94 44.12 29.54 68.60 2.03 46.15 16 13 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 14 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 15 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 16 N -0.65 -30.77 5.30 -451.67 -2.39 -33.17 16 17 C 0.10 3.73 0.95 3.53 0.00 3.73 16 18 C -0.12 -3.96 8.73 71.98 0.63 -3.33 16 19 C -0.11 -4.20 8.12 71.98 0.58 -3.61 16 20 C 0.04 1.28 3.84 86.31 0.33 1.61 16 21 H 0.04 1.27 6.28 -2.39 -0.01 1.26 16 22 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 23 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 25 H 0.05 1.37 6.48 -2.39 -0.02 1.36 16 26 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 27 H 0.04 1.17 6.56 -2.39 -0.02 1.16 16 28 H 0.06 2.60 6.06 -2.39 -0.01 2.59 16 29 H 0.01 0.53 6.56 -2.39 -0.02 0.52 16 30 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 31 H 0.31 14.78 8.70 -89.69 -0.78 14.00 16 32 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.04 1.79 5.95 -2.38 -0.01 1.78 16 36 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 37 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.03 0.86 6.48 -2.39 -0.02 0.84 16 39 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -60.18 292.08 0.66 -59.52 By element: Atomic # 1 Polarization: 21.34 SS G_CDS: 0.23 Total: 21.57 kcal Atomic # 6 Polarization: -24.66 SS G_CDS: 4.05 Total: -20.60 kcal Atomic # 7 Polarization: -100.99 SS G_CDS: -5.65 Total: -106.64 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -60.18 0.66 -59.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219508275.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.931 kcal (2) G-P(sol) polarization free energy of solvation -60.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds