Wall clock time and date at job start Mon Mar 30 2020 03:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53011 * 109.46737 * 2 1 4 4 N 1.46899 * 109.46966 * 180.02562 * 3 2 1 5 5 C 1.46952 * 111.00279 * 66.04373 * 4 3 2 6 6 C 1.53048 * 109.36875 * 183.18984 * 5 4 3 7 7 H 1.09001 * 109.48919 * 61.56351 * 6 5 4 8 8 C 1.50701 * 109.49364 * 181.61220 * 6 5 4 9 9 H 1.07999 * 119.99724 * 84.81305 * 8 6 5 10 10 C 1.37870 * 119.99749 * 264.81823 * 8 6 5 11 11 N 1.31519 * 120.00349 * 5.23244 * 10 8 6 12 12 Si 1.86804 * 119.99828 * 185.23580 * 10 8 6 13 13 H 1.48499 * 109.47160 * 59.99676 * 12 10 8 14 14 H 1.48497 * 109.47195 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47165 * 299.99787 * 12 10 8 16 16 N 1.46965 * 109.35998 * 301.59938 * 6 5 4 17 17 C 1.46899 * 110.99737 * 183.18775 * 16 6 5 18 18 C 1.46953 * 110.87942 * 59.32160 * 16 6 5 19 19 C 1.46953 * 110.99774 * 189.84734 * 4 3 2 20 20 H 1.09001 * 109.48571 * 296.77528 * 19 4 3 21 21 C 1.53000 * 109.49075 * 56.84188 * 19 4 3 22 22 H 1.09004 * 109.47010 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47499 * 299.99722 * 1 2 3 24 24 H 1.09001 * 109.47569 * 60.00657 * 1 2 3 25 25 H 1.09000 * 109.47499 * 240.00278 * 2 1 3 26 26 H 1.09001 * 109.47117 * 119.99627 * 2 1 3 27 27 H 1.09000 * 109.46899 * 59.99911 * 3 2 1 28 28 H 1.09001 * 109.46555 * 299.99964 * 3 2 1 29 29 H 1.09000 * 109.48898 * 303.15784 * 5 4 3 30 30 H 1.09002 * 109.48731 * 63.19782 * 5 4 3 31 31 H 0.96997 * 119.99731 * 180.02562 * 11 10 8 32 32 H 1.08997 * 109.47195 * 65.43285 * 17 16 6 33 33 H 1.09002 * 109.46750 * 185.43767 * 17 16 6 34 34 H 1.09004 * 109.47366 * 305.43103 * 17 16 6 35 35 H 1.08997 * 109.49325 * 60.64485 * 18 16 6 36 36 H 1.08997 * 109.48848 * 180.69138 * 18 16 6 37 37 H 1.08991 * 109.46809 * 60.00107 * 21 19 4 38 38 H 1.09005 * 109.46867 * 180.02562 * 21 19 4 39 39 H 1.09000 * 109.46723 * 299.99988 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5089 1.4427 -0.0006 5 6 4.0351 0.8859 -1.2546 6 6 5.5629 0.8299 -1.1835 7 1 5.8652 0.1750 -0.3663 8 6 6.1076 0.2962 -2.4833 9 1 6.2715 0.9650 -3.3153 10 6 6.3966 -1.0459 -2.6103 11 7 6.1016 -1.8774 -1.6349 12 14 7.2074 -1.6834 -4.1678 13 1 8.5205 -1.0146 -4.3517 14 1 7.4109 -3.1500 -4.0553 15 1 6.3359 -1.3921 -5.3344 16 7 6.0896 2.1817 -0.9490 17 6 7.5585 2.1818 -0.9496 18 6 5.5634 2.7385 0.3051 19 6 4.0355 2.7944 0.2340 20 1 3.7333 3.4493 -0.5832 21 6 3.4825 3.3358 1.5538 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6765 1.9564 0.8900 28 1 1.6765 1.9564 -0.8900 29 1 3.6407 -0.1199 -1.3997 30 1 3.7325 1.5189 -2.0888 31 1 6.3053 -2.8215 -1.7242 32 1 7.9215 1.9208 -1.9437 33 1 7.9219 3.1731 -0.6787 34 1 7.9223 1.4515 -0.2267 35 1 5.8656 2.1053 1.1392 36 1 5.9580 3.7441 0.4503 37 1 3.7859 2.6810 2.3706 38 1 3.8730 4.3386 1.7273 39 1 2.3943 3.3736 1.5035 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219509018.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:40 Heat of formation + Delta-G solvation = 1.167325 kcal Electronic energy + Delta-G solvation = -16892.558057 eV Core-core repulsion = 14448.758131 eV Total energy + Delta-G solvation = -2443.799926 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.75769 -35.48622 -33.35923 -32.39911 -30.95959 -27.93982 -26.89088 -24.71589 -24.00856 -22.70172 -20.64516 -20.18470 -18.68570 -16.48402 -15.25843 -15.08864 -14.52998 -14.28868 -14.10609 -13.56575 -13.33457 -13.12736 -12.54050 -12.43753 -11.98719 -11.72401 -11.53693 -11.31863 -11.19808 -11.05683 -10.88476 -10.75456 -10.55082 -10.38152 -10.36742 -9.98754 -9.69839 -9.48316 -9.00451 -8.46358 -7.52521 -7.06344 -6.03609 -4.08918 3.31126 3.36025 3.38873 4.39013 4.57381 5.02780 5.29176 5.31812 5.44061 5.48203 5.66184 5.75048 5.80008 5.89323 5.95490 6.04550 6.11502 6.21831 6.25650 6.27199 6.33385 6.40401 6.53614 6.56999 6.64060 6.74252 6.80171 6.84514 6.95716 7.30797 7.62771 7.81623 7.85580 7.97082 8.13469 8.30957 8.67989 9.07432 9.57505 11.03690 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.023024 B = 0.009875 C = 0.007329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.817342 B = 2834.631877 C = 3819.734856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.122 4.122 3 C 0.054 3.946 4 N -0.540 5.540 5 C 0.077 3.923 6 C 0.210 3.790 7 H 0.037 0.963 8 C -0.508 4.508 9 H 0.060 0.940 10 C 0.065 3.935 11 N -0.887 5.887 12 Si 0.893 3.107 13 H -0.276 1.276 14 H -0.288 1.288 15 H -0.276 1.276 16 N -0.549 5.549 17 C 0.049 3.951 18 C 0.064 3.936 19 C 0.086 3.914 20 H 0.038 0.962 21 C -0.144 4.144 22 H 0.052 0.948 23 H 0.049 0.951 24 H 0.049 0.951 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.022 0.978 29 H 0.076 0.924 30 H 0.018 0.982 31 H 0.262 0.738 32 H 0.072 0.928 33 H 0.037 0.963 34 H 0.013 0.987 35 H 0.029 0.971 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.053 0.947 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.003 6.325 4.429 9.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C -0.074 4.074 4 N -0.265 5.265 5 C -0.051 4.051 6 C 0.104 3.896 7 H 0.055 0.945 8 C -0.547 4.547 9 H 0.078 0.922 10 C -0.138 4.138 11 N -0.524 5.524 12 Si 0.721 3.279 13 H -0.202 1.202 14 H -0.213 1.213 15 H -0.202 1.202 16 N -0.274 5.274 17 C -0.099 4.099 18 C -0.065 4.065 19 C -0.023 4.023 20 H 0.056 0.944 21 C -0.202 4.202 22 H 0.071 0.929 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.040 0.960 29 H 0.094 0.906 30 H 0.036 0.964 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.056 0.944 34 H 0.032 0.968 35 H 0.047 0.953 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.987 6.117 4.480 9.661 hybrid contribution 0.415 -0.460 -0.847 1.050 sum -5.571 5.657 3.632 8.732 Atomic orbital electron populations 1.21730 0.96475 1.01215 1.01099 1.21528 0.94297 0.96981 1.03207 1.22147 0.89049 0.96673 0.99574 1.62341 1.05867 1.20377 1.37896 1.22453 0.97876 0.98290 0.86436 1.19419 0.89249 0.83421 0.97553 0.94498 1.20963 1.42947 0.92784 0.97996 0.92204 1.25013 0.95291 0.97026 0.96471 1.69971 1.46711 1.03552 1.32187 0.86641 0.80129 0.77563 0.83571 1.20190 1.21342 1.20181 1.62343 1.07178 1.27009 1.30883 1.22000 0.88524 0.97603 1.01780 1.22056 0.93469 0.98439 0.92584 1.21532 0.94918 0.89805 0.96007 0.94419 1.21889 1.00381 1.00161 0.97796 0.92921 0.93220 0.93200 0.91425 0.91414 0.91443 0.95993 0.90561 0.96398 0.92805 0.90915 0.94405 0.96823 0.95324 0.92328 0.92101 0.92787 0.92774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.91 37.16 0.37 -1.51 16 2 C -0.12 -1.98 5.86 -26.73 -0.16 -2.13 16 3 C 0.05 0.90 4.72 -3.82 -0.02 0.88 16 4 N -0.54 -10.84 4.53 -226.49 -1.03 -11.87 16 5 C 0.08 1.81 4.67 -3.77 -0.02 1.79 16 6 C 0.21 5.38 2.02 -68.80 -0.14 5.24 16 7 H 0.04 1.09 7.38 -51.93 -0.38 0.71 16 8 C -0.51 -13.93 7.05 -34.44 -0.24 -14.18 16 9 H 0.06 1.66 7.82 -52.49 -0.41 1.25 16 10 C 0.07 1.79 5.45 -17.82 -0.10 1.70 16 11 N -0.89 -25.50 12.84 55.43 0.71 -24.79 16 12 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 13 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 14 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 16 N -0.55 -12.50 4.78 -236.12 -1.13 -13.63 16 17 C 0.05 1.05 9.19 60.06 0.55 1.60 16 18 C 0.06 1.24 4.89 -3.77 -0.02 1.23 16 19 C 0.09 1.58 2.56 -67.65 -0.17 1.40 16 20 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 21 C -0.14 -2.08 8.89 37.16 0.33 -1.75 16 22 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 1.23 6.49 -51.93 -0.34 0.89 16 26 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.07 1.01 5.74 -51.93 -0.30 0.71 16 28 H 0.02 0.37 8.12 -51.93 -0.42 -0.05 16 29 H 0.08 1.92 6.33 -51.93 -0.33 1.60 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 32 H 0.07 1.61 7.22 -51.93 -0.37 1.24 16 33 H 0.04 0.67 8.04 -51.93 -0.42 0.26 16 34 H 0.01 0.29 8.13 -51.93 -0.42 -0.13 16 35 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 1.01 8.08 -51.93 -0.42 0.59 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.05 0.71 6.15 -51.93 -0.32 0.39 16 LS Contribution 299.32 15.07 4.51 4.51 Total: -1.00 -28.46 299.32 -8.64 -37.09 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -7.07 Total: -1.81 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: 0.39 Total: -5.72 kcal Atomic # 7 Polarization: -48.84 SS G_CDS: -1.44 Total: -50.28 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.46 -8.64 -37.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219509018.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.259 kcal (2) G-P(sol) polarization free energy of solvation -28.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds