Wall clock time and date at job start Mon Mar 30 2020 03:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53011 * 109.46737 * 2 1 4 4 N 1.46899 * 109.46966 * 180.02562 * 3 2 1 5 5 C 1.46952 * 111.00279 * 66.04373 * 4 3 2 6 6 C 1.53048 * 109.36875 * 183.18984 * 5 4 3 7 7 H 1.09001 * 109.48919 * 61.56351 * 6 5 4 8 8 C 1.50701 * 109.49364 * 181.61220 * 6 5 4 9 9 H 1.07999 * 119.99724 * 84.81305 * 8 6 5 10 10 C 1.37870 * 119.99749 * 264.81823 * 8 6 5 11 11 N 1.31519 * 120.00349 * 5.23244 * 10 8 6 12 12 Si 1.86804 * 119.99828 * 185.23580 * 10 8 6 13 13 H 1.48499 * 109.47160 * 59.99676 * 12 10 8 14 14 H 1.48497 * 109.47195 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47165 * 299.99787 * 12 10 8 16 16 N 1.46965 * 109.35998 * 301.59938 * 6 5 4 17 17 C 1.46899 * 110.99737 * 183.18775 * 16 6 5 18 18 C 1.46953 * 110.87942 * 59.32160 * 16 6 5 19 19 C 1.46953 * 110.99774 * 189.84734 * 4 3 2 20 20 H 1.09001 * 109.48571 * 296.77528 * 19 4 3 21 21 C 1.53000 * 109.49075 * 56.84188 * 19 4 3 22 22 H 1.09004 * 109.47010 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47499 * 299.99722 * 1 2 3 24 24 H 1.09001 * 109.47569 * 60.00657 * 1 2 3 25 25 H 1.09000 * 109.47499 * 240.00278 * 2 1 3 26 26 H 1.09001 * 109.47117 * 119.99627 * 2 1 3 27 27 H 1.09000 * 109.46899 * 59.99911 * 3 2 1 28 28 H 1.09001 * 109.46555 * 299.99964 * 3 2 1 29 29 H 1.09000 * 109.48898 * 303.15784 * 5 4 3 30 30 H 1.09002 * 109.48731 * 63.19782 * 5 4 3 31 31 H 0.96997 * 119.99731 * 180.02562 * 11 10 8 32 32 H 1.08997 * 109.47195 * 65.43285 * 17 16 6 33 33 H 1.09002 * 109.46750 * 185.43767 * 17 16 6 34 34 H 1.09004 * 109.47366 * 305.43103 * 17 16 6 35 35 H 1.08997 * 109.49325 * 60.64485 * 18 16 6 36 36 H 1.08997 * 109.48848 * 180.69138 * 18 16 6 37 37 H 1.08991 * 109.46809 * 60.00107 * 21 19 4 38 38 H 1.09005 * 109.46867 * 180.02562 * 21 19 4 39 39 H 1.09000 * 109.46723 * 299.99988 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5089 1.4427 -0.0006 5 6 4.0351 0.8859 -1.2546 6 6 5.5629 0.8299 -1.1835 7 1 5.8652 0.1750 -0.3663 8 6 6.1076 0.2962 -2.4833 9 1 6.2715 0.9650 -3.3153 10 6 6.3966 -1.0459 -2.6103 11 7 6.1016 -1.8774 -1.6349 12 14 7.2074 -1.6834 -4.1678 13 1 8.5205 -1.0146 -4.3517 14 1 7.4109 -3.1500 -4.0553 15 1 6.3359 -1.3921 -5.3344 16 7 6.0896 2.1817 -0.9490 17 6 7.5585 2.1818 -0.9496 18 6 5.5634 2.7385 0.3051 19 6 4.0355 2.7944 0.2340 20 1 3.7333 3.4493 -0.5832 21 6 3.4825 3.3358 1.5538 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6765 1.9564 0.8900 28 1 1.6765 1.9564 -0.8900 29 1 3.6407 -0.1199 -1.3997 30 1 3.7325 1.5189 -2.0888 31 1 6.3053 -2.8215 -1.7242 32 1 7.9215 1.9208 -1.9437 33 1 7.9219 3.1731 -0.6787 34 1 7.9223 1.4515 -0.2267 35 1 5.8656 2.1053 1.1392 36 1 5.9580 3.7441 0.4503 37 1 3.7859 2.6810 2.3706 38 1 3.8730 4.3386 1.7273 39 1 2.3943 3.3736 1.5035 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219509018.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:39 Heat of formation + Delta-G solvation = -18.380896 kcal Electronic energy + Delta-G solvation = -16893.405731 eV Core-core repulsion = 14448.758131 eV Total energy + Delta-G solvation = -2444.647600 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.40771 -37.11667 -35.08458 -34.06535 -32.61779 -29.62762 -28.50889 -26.28766 -25.74212 -24.37030 -22.19694 -21.70700 -20.39677 -18.56074 -17.04503 -16.64024 -16.17757 -15.81644 -15.73039 -15.23764 -15.04247 -14.76209 -14.04893 -13.83973 -13.63692 -13.11174 -13.01636 -12.82189 -12.74471 -12.68442 -12.63402 -12.35997 -12.13731 -11.97939 -11.88598 -11.65590 -11.47236 -11.17701 -10.93320 -10.54533 -9.14990 -8.93691 -8.15876 -6.28559 1.40066 1.41567 1.49809 2.39405 2.98767 3.17982 3.45398 3.97290 4.08179 4.17693 4.28272 4.35285 4.52928 4.59360 4.63743 4.65259 4.68625 4.74211 4.83253 4.87033 4.91320 4.97112 5.00748 5.13482 5.13779 5.23096 5.30243 5.31831 5.44760 5.48874 5.56041 5.70220 6.05773 6.26960 6.30577 6.48223 6.76551 6.93720 7.41856 8.91155 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.023024 B = 0.009875 C = 0.007329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.817342 B = 2834.631877 C = 3819.734856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.121 4.121 3 C 0.055 3.945 4 N -0.552 5.552 5 C 0.095 3.905 6 C 0.217 3.783 7 H -0.009 1.009 8 C -0.521 4.521 9 H 0.052 0.948 10 C 0.017 3.983 11 N -0.920 5.920 12 Si 0.958 3.042 13 H -0.269 1.269 14 H -0.283 1.283 15 H -0.270 1.270 16 N -0.558 5.558 17 C 0.053 3.947 18 C 0.062 3.938 19 C 0.083 3.917 20 H 0.033 0.967 21 C -0.134 4.134 22 H 0.059 0.941 23 H 0.070 0.930 24 H 0.055 0.945 25 H 0.035 0.965 26 H 0.056 0.944 27 H 0.096 0.904 28 H 0.023 0.977 29 H 0.048 0.952 30 H 0.005 0.995 31 H 0.263 0.737 32 H 0.056 0.944 33 H 0.077 0.923 34 H -0.004 1.004 35 H 0.014 0.986 36 H 0.091 0.909 37 H 0.056 0.944 38 H 0.080 0.920 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.796 7.983 4.823 11.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.159 4.159 3 C -0.072 4.072 4 N -0.278 5.278 5 C -0.034 4.034 6 C 0.110 3.890 7 H 0.009 0.991 8 C -0.560 4.560 9 H 0.071 0.929 10 C -0.183 4.183 11 N -0.558 5.558 12 Si 0.783 3.217 13 H -0.194 1.194 14 H -0.209 1.209 15 H -0.195 1.195 16 N -0.283 5.283 17 C -0.095 4.095 18 C -0.067 4.067 19 C -0.026 4.026 20 H 0.051 0.949 21 C -0.191 4.191 22 H 0.078 0.922 23 H 0.089 0.911 24 H 0.074 0.926 25 H 0.054 0.946 26 H 0.075 0.925 27 H 0.114 0.886 28 H 0.041 0.959 29 H 0.067 0.933 30 H 0.024 0.976 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.015 0.985 35 H 0.033 0.967 36 H 0.109 0.891 37 H 0.075 0.925 38 H 0.098 0.902 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.785 7.801 4.881 11.433 hybrid contribution 0.666 -0.920 -0.921 1.462 sum -6.118 6.880 3.961 10.023 Atomic orbital electron populations 1.21663 0.93351 1.02224 1.02391 1.21503 0.96992 0.96284 1.01111 1.22256 0.86839 0.97249 1.00870 1.62293 1.08084 1.21914 1.35472 1.21993 0.96614 0.96875 0.87878 1.19159 0.90543 0.84154 0.95149 0.99121 1.21182 1.43209 0.93104 0.98520 0.92934 1.25780 0.95767 0.97159 0.99571 1.70105 1.47820 1.03729 1.34184 0.85622 0.79320 0.77018 0.79787 1.19389 1.20883 1.19508 1.62308 1.08042 1.24880 1.33035 1.21995 0.87787 0.99309 1.00427 1.22224 0.94686 0.99397 0.90383 1.21686 0.94069 0.88618 0.98202 0.94856 1.21820 1.01322 1.01140 0.94843 0.92162 0.91146 0.92592 0.94579 0.92521 0.88555 0.95904 0.93320 0.97644 0.92828 0.92528 0.90487 0.98509 0.96728 0.89098 0.92513 0.90158 0.91124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 9.91 71.98 0.71 -2.56 16 2 C -0.12 -3.90 5.86 30.60 0.18 -3.72 16 3 C 0.06 1.79 4.72 86.31 0.41 2.20 16 4 N -0.55 -22.17 4.53 -870.47 -3.94 -26.11 16 5 C 0.09 4.64 4.67 86.31 0.40 5.04 16 6 C 0.22 11.56 2.02 44.17 0.09 11.65 16 7 H -0.01 -0.56 7.38 -2.39 -0.02 -0.58 16 8 C -0.52 -29.52 7.05 25.60 0.18 -29.34 16 9 H 0.05 2.99 7.82 -2.91 -0.02 2.97 16 10 C 0.02 0.97 5.45 84.65 0.46 1.43 16 11 N -0.92 -54.88 12.84 21.45 0.28 -54.61 16 12 Si 0.96 44.29 29.54 68.60 2.03 46.31 16 13 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 14 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 15 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 16 N -0.56 -25.48 4.78 -900.95 -4.30 -29.78 16 17 C 0.05 2.25 9.19 127.69 1.17 3.42 16 18 C 0.06 2.33 4.89 86.31 0.42 2.75 16 19 C 0.08 2.88 2.56 44.92 0.12 3.00 16 20 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 21 C -0.13 -3.38 8.89 71.98 0.64 -2.74 16 22 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 23 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.04 1.37 6.49 -2.39 -0.02 1.35 16 26 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.10 2.58 5.74 -2.39 -0.01 2.57 16 28 H 0.02 0.74 8.12 -2.39 -0.02 0.72 16 29 H 0.05 2.61 6.33 -2.39 -0.02 2.59 16 30 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 32 H 0.06 2.53 7.22 -2.39 -0.02 2.52 16 33 H 0.08 2.61 8.04 -2.39 -0.02 2.59 16 34 H 0.00 -0.17 8.13 -2.39 -0.02 -0.19 16 35 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.09 2.85 8.08 -2.39 -0.02 2.83 16 37 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.08 1.64 8.14 -2.38 -0.02 1.63 16 39 H 0.07 1.56 6.15 -2.39 -0.01 1.55 16 Total: -1.00 -63.79 299.32 -0.17 -63.96 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: 0.98 Total: 9.09 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: 4.79 Total: -8.87 kcal Atomic # 7 Polarization: -102.53 SS G_CDS: -7.97 Total: -110.50 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Total: -63.79 -0.17 -63.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219509018.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.584 kcal (2) G-P(sol) polarization free energy of solvation -63.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds