Wall clock time and date at job start Mon Mar 30 2020 03:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47373 * 2 1 4 4 N 1.46901 * 109.47427 * 179.97438 * 3 2 1 5 5 C 1.46961 * 110.99692 * 46.19892 * 4 3 2 6 6 C 1.53053 * 109.36352 * 183.18803 * 5 4 3 7 7 C 1.52997 * 109.48784 * 181.62987 * 6 5 4 8 8 C 1.53004 * 109.50289 * 61.57871 * 6 5 4 9 9 N 1.46952 * 109.36396 * 301.59918 * 6 5 4 10 10 C 1.46961 * 110.88148 * 59.32142 * 9 6 5 11 11 C 1.46957 * 111.00370 * 169.99726 * 4 3 2 12 12 H 1.09008 * 109.48703 * 296.80672 * 11 4 3 13 13 C 1.50704 * 109.48660 * 56.84464 * 11 4 3 14 14 H 1.07994 * 119.99626 * 5.47273 * 13 11 4 15 15 C 1.37868 * 119.99664 * 185.47257 * 13 11 4 16 16 N 1.31516 * 120.00537 * 9.17353 * 15 13 11 17 17 Si 1.86808 * 119.99670 * 189.17333 * 15 13 11 18 18 H 1.48497 * 109.46955 * 94.99495 * 17 15 13 19 19 H 1.48504 * 109.46708 * 214.98829 * 17 15 13 20 20 H 1.48494 * 109.47272 * 334.98870 * 17 15 13 21 21 H 1.08996 * 109.47459 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46942 * 300.00630 * 1 2 3 23 23 H 1.09004 * 109.46673 * 59.99884 * 1 2 3 24 24 H 1.09000 * 109.46942 * 239.99370 * 2 1 3 25 25 H 1.09004 * 109.46673 * 120.00116 * 2 1 3 26 26 H 1.09000 * 109.47601 * 59.99774 * 3 2 1 27 27 H 1.09004 * 109.47316 * 299.99722 * 3 2 1 28 28 H 1.08997 * 109.49053 * 303.15824 * 5 4 3 29 29 H 1.09002 * 109.48813 * 63.22455 * 5 4 3 30 30 H 1.08999 * 109.47290 * 179.89135 * 7 6 5 31 31 H 1.09000 * 109.47497 * 299.89362 * 7 6 5 32 32 H 1.08999 * 109.46905 * 59.89233 * 7 6 5 33 33 H 1.08994 * 109.47103 * 300.09801 * 8 6 5 34 34 H 1.09002 * 109.47047 * 60.09882 * 8 6 5 35 35 H 1.08999 * 109.46771 * 180.09723 * 8 6 5 36 36 H 1.00900 * 110.99685 * 183.18395 * 9 6 5 37 37 H 1.08997 * 109.49053 * 180.70863 * 10 9 6 38 38 H 1.09005 * 109.50295 * 60.65598 * 10 9 6 39 39 H 0.96998 * 120.00071 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5091 1.4424 0.0006 5 6 4.0361 0.4926 -0.9893 6 6 5.5639 0.4643 -0.9021 7 6 6.1177 -0.4933 -1.9590 8 6 5.9874 -0.0108 0.4892 9 7 6.0906 1.8154 -1.1404 10 6 5.5636 2.7652 -0.1505 11 6 4.0359 2.7935 -0.2377 12 1 3.7340 3.1319 -1.2289 13 6 3.4902 3.7367 0.8034 14 1 2.8911 3.3549 1.6168 15 6 3.7560 5.0868 0.7173 16 7 4.3278 5.5770 -0.3608 17 14 3.3037 6.2198 2.1320 18 1 4.4834 6.4044 3.0149 19 1 2.8768 7.5366 1.5944 20 1 2.1914 5.6191 2.9111 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 1.6767 1.9563 0.8899 27 1 1.6768 1.9563 -0.8900 28 1 3.6416 -0.5026 -0.7843 29 1 3.7346 0.8048 -1.9892 30 1 7.2059 -0.5118 -1.8980 31 1 5.7268 -1.4953 -1.7821 32 1 5.8151 -0.1550 -2.9500 33 1 5.5920 0.6711 1.2420 34 1 5.5966 -1.0129 0.6656 35 1 7.0755 -0.0290 0.5512 36 1 7.0996 1.8153 -1.1399 37 1 5.9580 3.7604 -0.3555 38 1 5.8651 2.4533 0.8495 39 1 4.5151 6.5269 -0.4211 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219511905.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:14 Heat of formation + Delta-G solvation = -2.113787 kcal Electronic energy + Delta-G solvation = -17088.231657 eV Core-core repulsion = 14644.289451 eV Total energy + Delta-G solvation = -2443.942205 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.93559 -35.42075 -33.54645 -31.67833 -30.99792 -27.33635 -26.80969 -26.03424 -23.97528 -23.29145 -20.37683 -20.08584 -17.83879 -16.50892 -15.35517 -14.79084 -14.55843 -14.19461 -13.97203 -13.70598 -13.24265 -13.09355 -12.50858 -12.21315 -11.98405 -11.74870 -11.66817 -11.37533 -11.10326 -10.96077 -10.79870 -10.69646 -10.61116 -10.34128 -10.16163 -10.00563 -9.97824 -9.34928 -8.91082 -8.45418 -7.54465 -7.03753 -6.03019 -4.04937 3.30564 3.37984 3.41235 4.41473 4.94786 4.96789 5.30343 5.37884 5.42115 5.48502 5.66015 5.72611 5.82229 5.98315 6.06424 6.15900 6.16213 6.22767 6.24736 6.28512 6.44169 6.45518 6.48809 6.59149 6.65939 6.77436 6.85279 6.96549 7.08290 7.37064 7.66120 7.81141 7.92117 8.13264 8.23534 8.37306 8.67140 9.04527 9.59524 11.05378 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.020671 B = 0.011072 C = 0.007943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.202658 B = 2528.395479 C = 3524.222025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.129 4.129 3 C 0.072 3.928 4 N -0.536 5.536 5 C 0.067 3.933 6 C 0.109 3.891 7 C -0.135 4.135 8 C -0.168 4.168 9 N -0.685 5.685 10 C 0.073 3.927 11 C 0.222 3.778 12 H 0.013 0.987 13 C -0.509 4.509 14 H 0.063 0.937 15 C 0.063 3.937 16 N -0.887 5.887 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.288 1.288 20 H -0.274 1.274 21 H 0.047 0.953 22 H 0.053 0.947 23 H 0.050 0.950 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.077 0.923 27 H 0.023 0.977 28 H 0.065 0.935 29 H 0.025 0.975 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.047 0.953 35 H 0.037 0.963 36 H 0.322 0.678 37 H 0.086 0.914 38 H 0.020 0.980 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.201 -10.287 -0.573 10.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.167 4.167 3 C -0.057 4.057 4 N -0.261 5.261 5 C -0.062 4.062 6 C 0.018 3.982 7 C -0.194 4.194 8 C -0.227 4.227 9 N -0.315 5.315 10 C -0.056 4.056 11 C 0.115 3.885 12 H 0.031 0.969 13 C -0.548 4.548 14 H 0.081 0.919 15 C -0.140 4.140 16 N -0.525 5.525 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.214 1.214 20 H -0.199 1.199 21 H 0.066 0.934 22 H 0.072 0.928 23 H 0.069 0.931 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.095 0.905 27 H 0.041 0.959 28 H 0.083 0.917 29 H 0.043 0.957 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.138 0.862 37 H 0.104 0.896 38 H 0.038 0.962 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.465 -10.082 -0.669 10.114 hybrid contribution 0.125 0.764 0.725 1.061 sum -0.340 -9.318 0.057 9.324 Atomic orbital electron populations 1.21721 0.96412 1.00692 1.01761 1.21740 0.95002 0.98360 1.01570 1.21904 0.88574 0.94132 1.01040 1.62280 1.06289 1.10153 1.47340 1.22112 0.93094 0.96741 0.94230 1.20912 0.94889 0.89395 0.93037 1.21793 1.00169 0.98148 0.99261 1.22383 0.99223 1.01446 0.99606 1.60902 1.11345 1.05860 1.53416 1.22194 0.97869 0.94842 0.90716 1.19241 0.89996 0.82890 0.96333 0.96932 1.21101 1.32635 0.91011 1.10040 0.91880 1.24959 0.95409 0.98036 0.95553 1.69995 1.43129 1.13348 1.25996 0.86591 0.78681 0.80117 0.82685 1.20739 1.21390 1.19863 0.93400 0.92754 0.93056 0.92543 0.91876 0.90508 0.95858 0.91723 0.95666 0.93170 0.92870 0.92319 0.90467 0.93402 0.94349 0.86159 0.89601 0.96217 0.92958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.91 37.16 0.37 -1.63 16 2 C -0.13 -2.04 5.19 -26.73 -0.14 -2.17 16 3 C 0.07 1.44 4.70 -3.83 -0.02 1.42 16 4 N -0.54 -11.62 3.98 -227.88 -0.91 -12.53 16 5 C 0.07 1.28 3.64 -3.76 -0.01 1.27 16 6 C 0.11 1.94 0.94 -131.55 -0.12 1.81 16 7 C -0.14 -1.96 8.75 37.16 0.32 -1.63 16 8 C -0.17 -2.83 8.11 37.16 0.30 -2.53 16 9 N -0.69 -13.83 6.34 -99.83 -0.63 -14.46 16 10 C 0.07 1.72 5.44 -3.77 -0.02 1.70 16 11 C 0.22 5.64 1.77 -68.81 -0.12 5.52 16 12 H 0.01 0.38 8.09 -51.92 -0.42 -0.04 16 13 C -0.51 -13.86 7.83 -34.44 -0.27 -14.13 16 14 H 0.06 1.73 6.73 -52.49 -0.35 1.37 16 15 C 0.06 1.72 5.22 -17.82 -0.09 1.63 16 16 N -0.89 -25.38 12.16 55.43 0.67 -24.70 16 17 Si 0.89 21.25 29.55 -169.99 -5.02 16.23 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 21 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.06 0.86 6.26 -51.93 -0.33 0.53 16 25 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.08 1.64 6.78 -51.93 -0.35 1.29 16 27 H 0.02 0.50 8.08 -51.93 -0.42 0.08 16 28 H 0.06 1.09 5.99 -51.93 -0.31 0.78 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.08 1.52 5.94 -51.93 -0.31 1.21 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.32 5.82 8.81 -39.29 -0.35 5.47 16 37 H 0.09 2.26 6.94 -51.93 -0.36 1.90 16 38 H 0.02 0.47 6.35 -51.93 -0.33 0.14 16 39 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 LS Contribution 294.58 15.07 4.44 4.44 Total: -1.00 -28.08 294.58 -8.14 -36.23 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -6.89 Total: 3.53 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: 0.19 Total: -8.73 kcal Atomic # 7 Polarization: -50.83 SS G_CDS: -0.87 Total: -51.69 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -28.08 -8.14 -36.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219511905.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.114 kcal (2) G-P(sol) polarization free energy of solvation -28.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds