Wall clock time and date at job start Mon Mar 30 2020 03:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47373 * 2 1 4 4 N 1.46901 * 109.47427 * 179.97438 * 3 2 1 5 5 C 1.46961 * 110.99692 * 46.19892 * 4 3 2 6 6 C 1.53053 * 109.36352 * 183.18803 * 5 4 3 7 7 C 1.52997 * 109.48784 * 181.62987 * 6 5 4 8 8 C 1.53004 * 109.50289 * 61.57871 * 6 5 4 9 9 N 1.46952 * 109.36396 * 301.59918 * 6 5 4 10 10 C 1.46961 * 110.88148 * 59.32142 * 9 6 5 11 11 C 1.46957 * 111.00370 * 169.99726 * 4 3 2 12 12 H 1.09008 * 109.48703 * 296.80672 * 11 4 3 13 13 C 1.50704 * 109.48660 * 56.84464 * 11 4 3 14 14 H 1.07994 * 119.99626 * 5.47273 * 13 11 4 15 15 C 1.37868 * 119.99664 * 185.47257 * 13 11 4 16 16 N 1.31516 * 120.00537 * 9.17353 * 15 13 11 17 17 Si 1.86808 * 119.99670 * 189.17333 * 15 13 11 18 18 H 1.48497 * 109.46955 * 94.99495 * 17 15 13 19 19 H 1.48504 * 109.46708 * 214.98829 * 17 15 13 20 20 H 1.48494 * 109.47272 * 334.98870 * 17 15 13 21 21 H 1.08996 * 109.47459 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46942 * 300.00630 * 1 2 3 23 23 H 1.09004 * 109.46673 * 59.99884 * 1 2 3 24 24 H 1.09000 * 109.46942 * 239.99370 * 2 1 3 25 25 H 1.09004 * 109.46673 * 120.00116 * 2 1 3 26 26 H 1.09000 * 109.47601 * 59.99774 * 3 2 1 27 27 H 1.09004 * 109.47316 * 299.99722 * 3 2 1 28 28 H 1.08997 * 109.49053 * 303.15824 * 5 4 3 29 29 H 1.09002 * 109.48813 * 63.22455 * 5 4 3 30 30 H 1.08999 * 109.47290 * 179.89135 * 7 6 5 31 31 H 1.09000 * 109.47497 * 299.89362 * 7 6 5 32 32 H 1.08999 * 109.46905 * 59.89233 * 7 6 5 33 33 H 1.08994 * 109.47103 * 300.09801 * 8 6 5 34 34 H 1.09002 * 109.47047 * 60.09882 * 8 6 5 35 35 H 1.08999 * 109.46771 * 180.09723 * 8 6 5 36 36 H 1.00900 * 110.99685 * 183.18395 * 9 6 5 37 37 H 1.08997 * 109.49053 * 180.70863 * 10 9 6 38 38 H 1.09005 * 109.50295 * 60.65598 * 10 9 6 39 39 H 0.96998 * 120.00071 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5091 1.4424 0.0006 5 6 4.0361 0.4926 -0.9893 6 6 5.5639 0.4643 -0.9021 7 6 6.1177 -0.4933 -1.9590 8 6 5.9874 -0.0108 0.4892 9 7 6.0906 1.8154 -1.1404 10 6 5.5636 2.7652 -0.1505 11 6 4.0359 2.7935 -0.2377 12 1 3.7340 3.1319 -1.2289 13 6 3.4902 3.7367 0.8034 14 1 2.8911 3.3549 1.6168 15 6 3.7560 5.0868 0.7173 16 7 4.3278 5.5770 -0.3608 17 14 3.3037 6.2198 2.1320 18 1 4.4834 6.4044 3.0149 19 1 2.8768 7.5366 1.5944 20 1 2.1914 5.6191 2.9111 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 1.6767 1.9563 0.8899 27 1 1.6768 1.9563 -0.8900 28 1 3.6416 -0.5026 -0.7843 29 1 3.7346 0.8048 -1.9892 30 1 7.2059 -0.5118 -1.8980 31 1 5.7268 -1.4953 -1.7821 32 1 5.8151 -0.1550 -2.9500 33 1 5.5920 0.6711 1.2420 34 1 5.5966 -1.0129 0.6656 35 1 7.0755 -0.0290 0.5512 36 1 7.0996 1.8153 -1.1399 37 1 5.9580 3.7604 -0.3555 38 1 5.8651 2.4533 0.8495 39 1 4.5151 6.5269 -0.4211 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219511905.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:14 Heat of formation + Delta-G solvation = -21.681775 kcal Electronic energy + Delta-G solvation = -17089.080188 eV Core-core repulsion = 14644.289451 eV Total energy + Delta-G solvation = -2444.790737 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.58174 -36.94836 -35.42740 -33.35167 -32.64160 -29.15226 -28.10116 -27.54505 -25.86453 -24.84861 -22.12556 -21.57516 -19.52013 -18.55151 -17.12162 -16.41023 -16.23610 -15.71588 -15.51466 -15.48798 -14.87392 -14.49918 -14.06561 -13.82012 -13.58354 -13.21076 -12.93433 -12.84019 -12.71942 -12.62504 -12.43954 -12.28460 -12.10802 -12.01916 -11.87783 -11.67959 -11.51457 -11.00385 -10.84100 -10.57659 -9.21058 -8.86837 -8.15709 -6.25191 1.39550 1.40863 1.51467 2.40361 3.11422 3.33143 3.47019 3.99059 4.08523 4.20571 4.30261 4.35289 4.48653 4.67962 4.72228 4.76796 4.81773 4.82786 4.88009 4.95490 4.98318 5.01754 5.07451 5.16909 5.21771 5.29115 5.35716 5.35941 5.48722 5.62646 5.64406 5.71829 6.09747 6.30176 6.38593 6.71838 6.80633 6.92168 7.43758 8.92580 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.020671 B = 0.011072 C = 0.007943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.202658 B = 2528.395479 C = 3524.222025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.117 4.117 3 C 0.072 3.928 4 N -0.537 5.537 5 C 0.065 3.935 6 C 0.103 3.897 7 C -0.127 4.127 8 C -0.159 4.159 9 N -0.693 5.693 10 C 0.090 3.910 11 C 0.230 3.770 12 H -0.041 1.041 13 C -0.523 4.523 14 H 0.057 0.943 15 C 0.016 3.984 16 N -0.917 5.917 17 Si 0.956 3.044 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.268 1.268 21 H 0.075 0.925 22 H 0.052 0.948 23 H 0.047 0.953 24 H 0.066 0.934 25 H 0.071 0.929 26 H 0.057 0.943 27 H -0.002 1.002 28 H 0.096 0.904 29 H 0.005 0.995 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.051 0.949 33 H 0.043 0.957 34 H 0.070 0.930 35 H 0.054 0.946 36 H 0.336 0.664 37 H 0.052 0.948 38 H 0.015 0.985 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.116 -12.466 0.103 12.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.154 4.154 3 C -0.056 4.056 4 N -0.261 5.261 5 C -0.063 4.063 6 C 0.012 3.988 7 C -0.185 4.185 8 C -0.218 4.218 9 N -0.324 5.324 10 C -0.040 4.040 11 C 0.123 3.877 12 H -0.023 1.023 13 C -0.562 4.562 14 H 0.075 0.925 15 C -0.184 4.184 16 N -0.556 5.556 17 Si 0.782 3.218 18 H -0.200 1.200 19 H -0.210 1.210 20 H -0.192 1.192 21 H 0.094 0.906 22 H 0.071 0.929 23 H 0.066 0.934 24 H 0.085 0.915 25 H 0.089 0.911 26 H 0.075 0.925 27 H 0.016 0.984 28 H 0.114 0.886 29 H 0.024 0.976 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.154 0.846 37 H 0.071 0.929 38 H 0.033 0.967 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.377 -12.289 0.006 12.295 hybrid contribution 0.080 1.406 0.469 1.484 sum -0.297 -10.884 0.474 10.898 Atomic orbital electron populations 1.21699 0.94470 1.02465 1.01581 1.21644 0.96642 0.94816 1.02343 1.21930 0.87807 0.97085 0.98819 1.62266 1.07210 1.08481 1.48139 1.22283 0.94449 0.97166 0.92396 1.21134 0.93891 0.88621 0.95185 1.21727 1.01202 0.98202 0.97355 1.22263 1.00267 1.01692 0.97552 1.60789 1.12413 1.07037 1.52173 1.21736 0.96667 0.94269 0.91283 1.18970 0.91190 0.84684 0.92888 1.02328 1.21341 1.32758 0.91901 1.10194 0.92479 1.25731 0.95352 0.99504 0.97801 1.70126 1.44121 1.13646 1.27740 0.85571 0.78642 0.78006 0.79603 1.19995 1.21022 1.19222 0.90575 0.92919 0.93382 0.91517 0.91073 0.92485 0.98401 0.88639 0.97645 0.91491 0.90243 0.93027 0.93751 0.91092 0.92684 0.84601 0.92930 0.96666 0.92914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.60 9.91 71.98 0.71 -2.88 16 2 C -0.12 -3.49 5.19 30.59 0.16 -3.33 16 3 C 0.07 2.94 4.70 86.30 0.41 3.34 16 4 N -0.54 -23.65 3.98 -874.86 -3.49 -27.14 16 5 C 0.07 2.43 3.64 86.31 0.31 2.74 16 6 C 0.10 3.46 0.94 3.54 0.00 3.47 16 7 C -0.13 -3.23 8.75 71.98 0.63 -2.61 16 8 C -0.16 -4.96 8.11 71.98 0.58 -4.37 16 9 N -0.69 -27.96 6.34 -469.76 -2.98 -30.94 16 10 C 0.09 4.44 5.44 86.31 0.47 4.91 16 11 C 0.23 12.24 1.77 44.17 0.08 12.32 16 12 H -0.04 -2.56 8.09 -2.38 -0.02 -2.58 16 13 C -0.52 -29.57 7.83 25.60 0.20 -29.37 16 14 H 0.06 3.22 6.73 -2.91 -0.02 3.21 16 15 C 0.02 0.88 5.22 84.65 0.44 1.33 16 16 N -0.92 -54.50 12.16 21.44 0.26 -54.24 16 17 Si 0.96 44.40 29.55 68.60 2.03 46.42 16 18 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 19 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 20 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 21 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 22 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 23 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 24 H 0.07 1.86 6.26 -2.39 -0.01 1.84 16 25 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 26 H 0.06 2.52 6.78 -2.39 -0.02 2.50 16 27 H 0.00 -0.11 8.08 -2.38 -0.02 -0.13 16 28 H 0.10 2.95 5.99 -2.39 -0.01 2.94 16 29 H 0.01 0.22 8.14 -2.39 -0.02 0.20 16 30 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.04 1.68 5.94 -2.39 -0.01 1.67 16 34 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.34 11.89 8.81 -89.69 -0.79 11.10 16 37 H 0.05 2.91 6.94 -2.39 -0.02 2.89 16 38 H 0.02 0.75 6.35 -2.38 -0.02 0.74 16 39 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -63.50 294.58 0.04 -63.46 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 0.22 Total: 16.89 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: 4.00 Total: -14.46 kcal Atomic # 7 Polarization: -106.11 SS G_CDS: -6.20 Total: -112.32 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Total: -63.50 0.04 -63.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219511905.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.777 kcal (2) G-P(sol) polarization free energy of solvation -63.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds