Wall clock time and date at job start Mon Mar 30 2020 03:13:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.53007 * 109.46829 * 2 1
4 4 H 1.08998 * 109.47325 * 302.81688 * 3 2 1
5 5 C 1.53000 * 109.46869 * 182.81910 * 3 2 1
6 6 N 1.46900 * 109.47071 * 62.82342 * 3 2 1
7 7 C 1.44178 * 110.99959 * 61.23728 * 6 3 2
8 8 C 1.54318 * 112.61530 * 217.51619 * 7 6 3
9 9 C 1.54320 * 111.73120 * 318.91268 * 8 7 6
10 10 N 1.44177 * 112.60751 * 318.92122 * 9 8 7
11 11 C 1.48078 * 109.89729 * 94.34357 * 10 9 8
12 12 C 1.46088 * 112.16407 * 279.64321 * 11 10 9
13 13 H 1.09000 * 108.87440 * 300.04857 * 12 11 10
14 14 C 1.50701 * 108.94599 * 181.37549 * 12 11 10
15 15 H 1.08008 * 119.99924 * 243.09237 * 14 12 11
16 16 C 1.37875 * 119.99905 * 63.08949 * 14 12 11
17 17 N 1.31512 * 120.00170 * 0.02562 * 16 14 12
18 18 Si 1.86803 * 119.99887 * 180.02562 * 16 14 12
19 19 H 1.48504 * 109.47173 * 359.97438 * 18 16 14
20 20 H 1.48496 * 109.47319 * 119.99986 * 18 16 14
21 21 H 1.48503 * 109.46728 * 240.00311 * 18 16 14
22 22 H 1.09001 * 109.46790 * 300.00108 * 1 2 3
23 23 H 1.09001 * 109.46903 * 59.99935 * 1 2 3
24 24 H 1.08994 * 109.46736 * 179.97438 * 1 2 3
25 25 H 1.09007 * 109.47112 * 240.00518 * 2 1 3
26 26 H 1.08992 * 109.47491 * 119.99927 * 2 1 3
27 27 H 1.09004 * 109.47028 * 179.97438 * 5 3 2
28 28 H 1.09002 * 109.47616 * 300.00330 * 5 3 2
29 29 H 1.09001 * 109.47223 * 60.00470 * 5 3 2
30 30 H 1.08992 * 108.85452 * 338.32289 * 7 6 3
31 31 H 1.08999 * 108.85205 * 96.71195 * 7 6 3
32 32 H 1.09005 * 109.02613 * 198.33998 * 8 7 6
33 33 H 1.08996 * 108.97012 * 79.45688 * 8 7 6
34 34 H 1.08996 * 108.85215 * 198.11094 * 9 8 7
35 35 H 1.08998 * 108.84938 * 79.72313 * 9 8 7
36 36 H 1.00901 * 110.99997 * 217.51664 * 10 9 8
37 37 H 1.08993 * 108.94435 * 158.94701 * 11 10 9
38 38 H 1.09004 * 108.94359 * 40.33379 * 11 10 9
39 39 H 0.96997 * 119.99992 * 179.97438 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 1 1.6360 1.9708 -0.8636
5 6 3.5683 1.4432 -0.0709
6 7 1.6068 2.1151 1.2321
7 6 2.1476 1.4589 2.3964
8 6 1.1523 1.4266 3.5753
9 6 0.3921 2.7620 3.7180
10 7 1.2429 3.9084 3.5163
11 6 1.1654 4.3514 2.1055
12 6 2.0052 3.5413 1.2265
13 1 3.0409 3.6207 1.5569
14 6 1.8984 4.0736 -0.1793
15 1 1.4842 3.4543 -0.9613
16 6 2.3295 5.3512 -0.4673
17 7 2.8344 6.1051 0.4847
18 14 2.1965 6.0113 -2.2098
19 1 1.5988 4.9736 -3.0879
20 1 1.3360 7.2215 -2.2163
21 1 3.5496 6.3631 -2.7104
22 1 -0.3633 0.5139 0.8900
23 1 -0.3633 0.5139 -0.8900
24 1 -0.3632 -1.0276 -0.0005
25 1 1.8934 -0.5138 -0.8901
26 1 1.8934 -0.5138 0.8899
27 1 3.9316 2.4709 -0.0714
28 1 3.9725 0.9149 0.7926
29 1 3.8898 0.9442 -0.9852
30 1 2.4138 0.4356 2.1322
31 1 3.0488 1.9853 2.7106
32 1 1.6996 1.2291 4.4971
33 1 0.4334 0.6242 3.4102
34 1 -0.0407 2.8159 4.7169
35 1 -0.4141 2.7883 2.9850
36 1 0.9949 4.6578 4.1448
37 1 1.4870 5.3909 2.0428
38 1 0.1309 4.2820 1.7691
39 1 3.1380 7.0038 0.2820
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000219515063.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:13:14
Heat of formation + Delta-G solvation = 13.698285 kcal
Electronic energy + Delta-G solvation = -17495.759981 eV
Core-core repulsion = 15052.503439 eV
Total energy + Delta-G solvation = -2443.256542 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-38.84775 -35.54888 -33.45412 -31.76699 -30.82070 -28.82871 -26.54717 -25.12561
-23.36028 -22.95966 -20.56768 -19.52933 -18.01135 -16.41147 -16.02724 -14.69854
-14.54243 -14.11176 -13.85315 -13.78686 -13.06301 -12.76093 -12.71357 -12.09955
-11.81973 -11.63265 -11.27116 -11.11362 -10.98166 -10.80907 -10.60659 -10.56667
-10.30509 -10.23155 -9.92979 -9.85162 -9.57037 -9.24064 -8.62737 -8.45079
-7.46919 -6.96226 -6.04993 -4.09973 3.26936 3.35685 3.39087 4.38632
5.06762 5.18654 5.37178 5.49580 5.65809 5.74079 5.79857 5.86611
6.10756 6.22472 6.23202 6.28522 6.40326 6.42313 6.47987 6.54540
6.58715 6.66267 6.76836 6.83597 6.84630 6.94619 7.03368 7.19085
7.24700 7.52077 7.80923 7.87084 8.09585 8.28139 8.30653 8.49613
8.78582 9.02436 9.56238 11.01564
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.023177 B = 0.012233 C = 0.009260
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1207.799797 B = 2288.396753 C = 3023.104462
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.120 4.120
3 C 0.087 3.913
4 H 0.098 0.902
5 C -0.175 4.175
6 N -0.524 5.524
7 C 0.064 3.936
8 C -0.100 4.100
9 C 0.074 3.926
10 N -0.694 5.694
11 C 0.075 3.925
12 C 0.220 3.780
13 H 0.013 0.987
14 C -0.514 4.514
15 H 0.070 0.930
16 C 0.060 3.940
17 N -0.890 5.890
18 Si 0.891 3.109
19 H -0.273 1.273
20 H -0.285 1.285
21 H -0.285 1.285
22 H 0.066 0.934
23 H 0.047 0.953
24 H 0.034 0.966
25 H 0.050 0.950
26 H 0.054 0.946
27 H 0.074 0.926
28 H 0.037 0.963
29 H 0.039 0.961
30 H 0.047 0.953
31 H 0.033 0.967
32 H 0.047 0.953
33 H 0.049 0.951
34 H 0.035 0.965
35 H 0.035 0.965
36 H 0.325 0.675
37 H 0.099 0.901
38 H 0.014 0.986
39 H 0.260 0.740
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.834 -7.753 2.346 8.582
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.157 4.157
3 C -0.022 4.022
4 H 0.115 0.885
5 C -0.234 4.234
6 N -0.248 5.248
7 C -0.066 4.066
8 C -0.139 4.139
9 C -0.057 4.057
10 N -0.324 5.324
11 C -0.053 4.053
12 C 0.114 3.886
13 H 0.031 0.969
14 C -0.553 4.553
15 H 0.088 0.912
16 C -0.142 4.142
17 N -0.529 5.529
18 Si 0.719 3.281
19 H -0.197 1.197
20 H -0.211 1.211
21 H -0.211 1.211
22 H 0.085 0.915
23 H 0.066 0.934
24 H 0.053 0.947
25 H 0.069 0.931
26 H 0.072 0.928
27 H 0.093 0.907
28 H 0.056 0.944
29 H 0.058 0.942
30 H 0.065 0.935
31 H 0.051 0.949
32 H 0.066 0.934
33 H 0.067 0.933
34 H 0.054 0.946
35 H 0.054 0.946
36 H 0.141 0.859
37 H 0.117 0.883
38 H 0.032 0.968
39 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges -2.707 -7.966 2.303 8.723
hybrid contribution 0.024 0.901 -0.917 1.285
sum -2.683 -7.065 1.387 7.684
Atomic orbital electron populations
1.21599 0.95901 0.99350 1.02642 1.21729 0.96364 0.97360 1.00294
1.21724 0.92408 0.92443 0.95594 0.88452 1.22409 0.98586 1.02987
0.99440 1.61714 1.58907 1.04406 0.99756 1.21684 0.95863 0.97430
0.91607 1.21976 0.98193 0.96431 0.97334 1.21452 0.94145 0.92129
0.97960 1.60008 1.56545 1.07939 1.07861 1.21234 0.97872 1.02222
0.83960 1.18179 0.94004 0.82069 0.94361 0.96921 1.21508 1.40722
0.98964 0.94115 0.91202 1.24964 0.95165 0.96985 0.97038 1.69889
1.41916 1.09332 1.31749 0.86541 0.77634 0.78952 0.84926 1.19739
1.21109 1.21142 0.91542 0.93386 0.94728 0.93082 0.92753 0.90690
0.94365 0.94184 0.93460 0.94907 0.93387 0.93269 0.94599 0.94631
0.85926 0.88312 0.96776 0.92968
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.15 9.78 37.16 0.36 -1.79 16
2 C -0.12 -1.95 5.24 -26.73 -0.14 -2.09 16
3 C 0.09 1.70 1.89 -67.71 -0.13 1.57 16
4 H 0.10 2.12 5.34 -51.93 -0.28 1.84 16
5 C -0.18 -3.39 8.54 37.16 0.32 -3.07 16
6 N -0.52 -10.98 3.57 -224.45 -0.80 -11.78 16
7 C 0.06 1.23 3.82 -4.59 -0.02 1.21 16
8 C -0.10 -1.72 6.42 -25.35 -0.16 -1.89 16
9 C 0.07 1.34 6.00 -4.59 -0.03 1.31 16
10 N -0.69 -14.13 6.44 -117.73 -0.76 -14.89 16
11 C 0.07 1.78 5.15 -6.45 -0.03 1.75 16
12 C 0.22 5.38 1.03 -71.49 -0.07 5.31 16
13 H 0.01 0.37 6.89 -51.93 -0.36 0.01 16
14 C -0.51 -13.38 6.88 -34.44 -0.24 -13.62 16
15 H 0.07 1.82 5.26 -52.48 -0.28 1.54 16
16 C 0.06 1.60 5.28 -17.82 -0.09 1.50 16
17 N -0.89 -24.66 11.44 55.43 0.63 -24.03 16
18 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16
19 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16
20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16
21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16
22 H 0.07 1.13 7.69 -51.93 -0.40 0.73 16
23 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16
24 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16
25 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16
26 H 0.05 0.86 5.99 -51.93 -0.31 0.55 16
27 H 0.07 1.69 6.42 -51.93 -0.33 1.36 16
28 H 0.04 0.70 6.85 -51.93 -0.36 0.34 16
29 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16
30 H 0.05 0.84 4.87 -51.93 -0.25 0.59 16
31 H 0.03 0.71 7.16 -51.93 -0.37 0.34 16
32 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16
33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16
34 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16
35 H 0.04 0.70 7.16 -51.93 -0.37 0.32 16
36 H 0.32 5.96 8.89 -39.29 -0.35 5.61 16
37 H 0.10 2.60 6.00 -51.93 -0.31 2.29 16
38 H 0.01 0.35 7.37 -51.93 -0.38 -0.04 16
39 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16
LS Contribution 283.56 15.07 4.27 4.27
Total: -1.00 -26.62 283.56 -8.35 -34.98
By element:
Atomic # 1 Polarization: 11.90 SS G_CDS: -6.45 Total: 5.46 kcal
Atomic # 6 Polarization: -9.57 SS G_CDS: -0.23 Total: -9.80 kcal
Atomic # 7 Polarization: -49.77 SS G_CDS: -0.93 Total: -50.70 kcal
Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal
Total LS contribution 4.27 Total: 4.27 kcal
Total: -26.62 -8.35 -34.98 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000219515063.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 48.675 kcal
(2) G-P(sol) polarization free energy of solvation -26.625 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.050 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.352 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.977 kcal
(6) G-S(sol) free energy of system = (1) + (5) 13.698 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds