Wall clock time and date at job start Mon Mar 30 2020 03:13:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.53007 * 109.46829 * 2 1
4 4 H 1.08998 * 109.47325 * 302.81688 * 3 2 1
5 5 C 1.53000 * 109.46869 * 182.81910 * 3 2 1
6 6 N 1.46900 * 109.47071 * 62.82342 * 3 2 1
7 7 C 1.44178 * 110.99959 * 61.23728 * 6 3 2
8 8 C 1.54318 * 112.61530 * 217.51619 * 7 6 3
9 9 C 1.54320 * 111.73120 * 318.91268 * 8 7 6
10 10 N 1.44177 * 112.60751 * 318.92122 * 9 8 7
11 11 C 1.48078 * 109.89729 * 94.34357 * 10 9 8
12 12 C 1.46088 * 112.16407 * 279.64321 * 11 10 9
13 13 H 1.09000 * 108.87440 * 300.04857 * 12 11 10
14 14 C 1.50701 * 108.94599 * 181.37549 * 12 11 10
15 15 H 1.08008 * 119.99924 * 243.09237 * 14 12 11
16 16 C 1.37875 * 119.99905 * 63.08949 * 14 12 11
17 17 N 1.31512 * 120.00170 * 0.02562 * 16 14 12
18 18 Si 1.86803 * 119.99887 * 180.02562 * 16 14 12
19 19 H 1.48504 * 109.47173 * 359.97438 * 18 16 14
20 20 H 1.48496 * 109.47319 * 119.99986 * 18 16 14
21 21 H 1.48503 * 109.46728 * 240.00311 * 18 16 14
22 22 H 1.09001 * 109.46790 * 300.00108 * 1 2 3
23 23 H 1.09001 * 109.46903 * 59.99935 * 1 2 3
24 24 H 1.08994 * 109.46736 * 179.97438 * 1 2 3
25 25 H 1.09007 * 109.47112 * 240.00518 * 2 1 3
26 26 H 1.08992 * 109.47491 * 119.99927 * 2 1 3
27 27 H 1.09004 * 109.47028 * 179.97438 * 5 3 2
28 28 H 1.09002 * 109.47616 * 300.00330 * 5 3 2
29 29 H 1.09001 * 109.47223 * 60.00470 * 5 3 2
30 30 H 1.08992 * 108.85452 * 338.32289 * 7 6 3
31 31 H 1.08999 * 108.85205 * 96.71195 * 7 6 3
32 32 H 1.09005 * 109.02613 * 198.33998 * 8 7 6
33 33 H 1.08996 * 108.97012 * 79.45688 * 8 7 6
34 34 H 1.08996 * 108.85215 * 198.11094 * 9 8 7
35 35 H 1.08998 * 108.84938 * 79.72313 * 9 8 7
36 36 H 1.00901 * 110.99997 * 217.51664 * 10 9 8
37 37 H 1.08993 * 108.94435 * 158.94701 * 11 10 9
38 38 H 1.09004 * 108.94359 * 40.33379 * 11 10 9
39 39 H 0.96997 * 119.99992 * 179.97438 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 1 1.6360 1.9708 -0.8636
5 6 3.5683 1.4432 -0.0709
6 7 1.6068 2.1151 1.2321
7 6 2.1476 1.4589 2.3964
8 6 1.1523 1.4266 3.5753
9 6 0.3921 2.7620 3.7180
10 7 1.2429 3.9084 3.5163
11 6 1.1654 4.3514 2.1055
12 6 2.0052 3.5413 1.2265
13 1 3.0409 3.6207 1.5569
14 6 1.8984 4.0736 -0.1793
15 1 1.4842 3.4543 -0.9613
16 6 2.3295 5.3512 -0.4673
17 7 2.8344 6.1051 0.4847
18 14 2.1965 6.0113 -2.2098
19 1 1.5988 4.9736 -3.0879
20 1 1.3360 7.2215 -2.2163
21 1 3.5496 6.3631 -2.7104
22 1 -0.3633 0.5139 0.8900
23 1 -0.3633 0.5139 -0.8900
24 1 -0.3632 -1.0276 -0.0005
25 1 1.8934 -0.5138 -0.8901
26 1 1.8934 -0.5138 0.8899
27 1 3.9316 2.4709 -0.0714
28 1 3.9725 0.9149 0.7926
29 1 3.8898 0.9442 -0.9852
30 1 2.4138 0.4356 2.1322
31 1 3.0488 1.9853 2.7106
32 1 1.6996 1.2291 4.4971
33 1 0.4334 0.6242 3.4102
34 1 -0.0407 2.8159 4.7169
35 1 -0.4141 2.7883 2.9850
36 1 0.9949 4.6578 4.1448
37 1 1.4870 5.3909 2.0428
38 1 0.1309 4.2820 1.7691
39 1 3.1380 7.0038 0.2820
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000219515063.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:13:14
Heat of formation + Delta-G solvation = -4.313854 kcal
Electronic energy + Delta-G solvation = -17496.541046 eV
Core-core repulsion = 15052.503439 eV
Total energy + Delta-G solvation = -2444.037607 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-40.52671 -37.14201 -35.34135 -33.27085 -32.59931 -30.36959 -28.36531 -26.83357
-25.17502 -24.39864 -22.07862 -21.33220 -19.63598 -18.18289 -17.89495 -16.45029
-16.15160 -15.88563 -15.52934 -15.39854 -14.58757 -14.40386 -14.13401 -13.77491
-13.53331 -13.23477 -12.89154 -12.86537 -12.62349 -12.45762 -12.24853 -12.20363
-11.90957 -11.81671 -11.53616 -11.50296 -11.17633 -10.92848 -10.48198 -10.48095
-9.15452 -8.70560 -8.10269 -6.21114 1.39204 1.42197 1.52421 2.42122
3.17210 3.46784 3.67466 4.06231 4.23507 4.32852 4.39937 4.47087
4.63712 4.68186 4.79086 4.81746 4.88949 4.91900 5.01226 5.02772
5.13360 5.18301 5.24810 5.29245 5.34357 5.36270 5.40819 5.56535
5.67457 5.70228 5.78504 5.93095 6.24375 6.47427 6.50919 6.83698
6.99641 7.04458 7.48826 8.95932
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.023177 B = 0.012233 C = 0.009260
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1207.799797 B = 2288.396753 C = 3023.104462
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C -0.110 4.110
3 C 0.082 3.918
4 H 0.073 0.927
5 C -0.166 4.166
6 N -0.520 5.520
7 C 0.064 3.936
8 C -0.097 4.097
9 C 0.072 3.928
10 N -0.698 5.698
11 C 0.090 3.910
12 C 0.233 3.767
13 H -0.033 1.033
14 C -0.521 4.521
15 H 0.069 0.931
16 C 0.013 3.987
17 N -0.919 5.919
18 Si 0.951 3.049
19 H -0.266 1.266
20 H -0.283 1.283
21 H -0.285 1.285
22 H 0.050 0.950
23 H 0.039 0.961
24 H 0.062 0.938
25 H 0.070 0.930
26 H 0.064 0.936
27 H 0.032 0.968
28 H 0.046 0.954
29 H 0.062 0.938
30 H 0.068 0.932
31 H 0.002 0.998
32 H 0.065 0.935
33 H 0.071 0.929
34 H 0.068 0.932
35 H 0.021 0.979
36 H 0.337 0.663
37 H 0.068 0.932
38 H 0.001 0.999
39 H 0.260 0.740
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.697 -9.785 2.351 10.721
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.190 4.190
2 C -0.148 4.148
3 C -0.027 4.027
4 H 0.090 0.910
5 C -0.225 4.225
6 N -0.244 5.244
7 C -0.065 4.065
8 C -0.136 4.136
9 C -0.059 4.059
10 N -0.327 5.327
11 C -0.039 4.039
12 C 0.126 3.874
13 H -0.016 1.016
14 C -0.560 4.560
15 H 0.087 0.913
16 C -0.185 4.185
17 N -0.559 5.559
18 Si 0.777 3.223
19 H -0.190 1.190
20 H -0.209 1.209
21 H -0.211 1.211
22 H 0.069 0.931
23 H 0.058 0.942
24 H 0.081 0.919
25 H 0.089 0.911
26 H 0.083 0.917
27 H 0.051 0.949
28 H 0.065 0.935
29 H 0.081 0.919
30 H 0.086 0.914
31 H 0.020 0.980
32 H 0.083 0.917
33 H 0.090 0.910
34 H 0.087 0.913
35 H 0.039 0.961
36 H 0.153 0.847
37 H 0.086 0.914
38 H 0.019 0.981
39 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges -3.580 -10.018 2.316 10.887
hybrid contribution 0.312 1.493 -0.884 1.763
sum -3.268 -8.525 1.432 9.241
Atomic orbital electron populations
1.21546 0.95224 1.00792 1.01475 1.21651 0.96849 0.94558 1.01745
1.21783 0.92400 0.94455 0.94029 0.90951 1.22285 0.98558 1.00675
1.00985 1.61734 1.58709 1.02763 1.01148 1.21742 0.95380 0.97706
0.91670 1.21992 0.98190 0.96488 0.96935 1.21537 0.93485 0.91524
0.99335 1.59936 1.57613 1.09179 1.06018 1.20869 0.96463 1.00511
0.86086 1.17895 0.91421 0.84506 0.93628 1.01573 1.21772 1.40130
0.99042 0.95020 0.91334 1.25677 0.95061 0.97365 1.00432 1.70026
1.42875 1.09505 1.33473 0.85604 0.77446 0.78345 0.80865 1.18987
1.20851 1.21111 0.93133 0.94170 0.91936 0.91095 0.91705 0.94861
0.93465 0.91948 0.91420 0.97987 0.91665 0.91037 0.91335 0.96114
0.84658 0.91351 0.98089 0.93112
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.78 9.78 71.98 0.70 -3.08 16
2 C -0.11 -3.28 5.24 30.60 0.16 -3.12 16
3 C 0.08 3.15 1.89 44.92 0.09 3.23 16
4 H 0.07 3.16 5.34 -2.39 -0.01 3.15 16
5 C -0.17 -6.39 8.54 71.98 0.61 -5.78 16
6 N -0.52 -21.77 3.57 -864.01 -3.09 -24.85 16
7 C 0.06 2.41 3.82 87.26 0.33 2.74 16
8 C -0.10 -3.09 6.42 31.49 0.20 -2.88 16
9 C 0.07 2.46 6.00 87.26 0.52 2.99 16
10 N -0.70 -28.35 6.44 -526.39 -3.39 -31.74 16
11 C 0.09 4.39 5.15 83.95 0.43 4.82 16
12 C 0.23 11.77 1.03 41.82 0.04 11.82 16
13 H -0.03 -1.97 6.89 -2.39 -0.02 -1.99 16
14 C -0.52 -27.95 6.88 25.60 0.18 -27.77 16
15 H 0.07 3.65 5.26 -2.91 -0.02 3.63 16
16 C 0.01 0.73 5.28 84.65 0.45 1.18 16
17 N -0.92 -52.83 11.44 21.45 0.25 -52.59 16
18 Si 0.95 43.49 29.54 68.60 2.03 45.52 16
19 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16
20 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16
21 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16
22 H 0.05 1.59 7.69 -2.39 -0.02 1.58 16
23 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16
24 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16
25 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16
26 H 0.06 1.81 5.99 -2.39 -0.01 1.79 16
27 H 0.03 1.53 6.42 -2.39 -0.02 1.52 16
28 H 0.05 1.69 6.85 -2.39 -0.02 1.67 16
29 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16
30 H 0.07 2.24 4.87 -2.39 -0.01 2.23 16
31 H 0.00 0.08 7.16 -2.39 -0.02 0.06 16
32 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16
33 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16
34 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16
35 H 0.02 0.78 7.16 -2.39 -0.02 0.76 16
36 H 0.34 12.24 8.89 -89.69 -0.80 11.44 16
37 H 0.07 3.77 6.00 -2.39 -0.01 3.75 16
38 H 0.00 0.05 7.37 -2.38 -0.02 0.03 16
39 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16
Total: -1.00 -59.24 283.56 -0.25 -59.49
By element:
Atomic # 1 Polarization: 19.80 SS G_CDS: 0.23 Total: 20.03 kcal
Atomic # 6 Polarization: -19.57 SS G_CDS: 3.72 Total: -15.85 kcal
Atomic # 7 Polarization: -102.95 SS G_CDS: -6.23 Total: -109.18 kcal
Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal
Total: -59.24 -0.25 -59.49 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000219515063.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 55.174 kcal
(2) G-P(sol) polarization free energy of solvation -59.236 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.061 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.253 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.488 kcal
(6) G-S(sol) free energy of system = (1) + (5) -4.314 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds