Wall clock time and date at job start Mon Mar 30 2020 03:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.46829 * 2 1 4 4 H 1.08998 * 109.47325 * 302.81688 * 3 2 1 5 5 C 1.53000 * 109.46869 * 182.81910 * 3 2 1 6 6 N 1.46900 * 109.47071 * 62.82342 * 3 2 1 7 7 C 1.44178 * 110.99959 * 61.23728 * 6 3 2 8 8 C 1.54318 * 112.61530 * 217.51619 * 7 6 3 9 9 C 1.54320 * 111.73120 * 318.91268 * 8 7 6 10 10 N 1.44177 * 112.60751 * 318.92122 * 9 8 7 11 11 C 1.48078 * 109.89729 * 94.34357 * 10 9 8 12 12 C 1.46088 * 112.16407 * 279.64321 * 11 10 9 13 13 H 1.09000 * 108.87440 * 300.04857 * 12 11 10 14 14 C 1.50701 * 108.94599 * 181.37549 * 12 11 10 15 15 H 1.08008 * 119.99924 * 243.09237 * 14 12 11 16 16 C 1.37875 * 119.99905 * 63.08949 * 14 12 11 17 17 N 1.31512 * 120.00170 * 0.02562 * 16 14 12 18 18 Si 1.86803 * 119.99887 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47173 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47319 * 119.99986 * 18 16 14 21 21 H 1.48503 * 109.46728 * 240.00311 * 18 16 14 22 22 H 1.09001 * 109.46790 * 300.00108 * 1 2 3 23 23 H 1.09001 * 109.46903 * 59.99935 * 1 2 3 24 24 H 1.08994 * 109.46736 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.47112 * 240.00518 * 2 1 3 26 26 H 1.08992 * 109.47491 * 119.99927 * 2 1 3 27 27 H 1.09004 * 109.47028 * 179.97438 * 5 3 2 28 28 H 1.09002 * 109.47616 * 300.00330 * 5 3 2 29 29 H 1.09001 * 109.47223 * 60.00470 * 5 3 2 30 30 H 1.08992 * 108.85452 * 338.32289 * 7 6 3 31 31 H 1.08999 * 108.85205 * 96.71195 * 7 6 3 32 32 H 1.09005 * 109.02613 * 198.33998 * 8 7 6 33 33 H 1.08996 * 108.97012 * 79.45688 * 8 7 6 34 34 H 1.08996 * 108.85215 * 198.11094 * 9 8 7 35 35 H 1.08998 * 108.84938 * 79.72313 * 9 8 7 36 36 H 1.00901 * 110.99997 * 217.51664 * 10 9 8 37 37 H 1.08993 * 108.94435 * 158.94701 * 11 10 9 38 38 H 1.09004 * 108.94359 * 40.33379 * 11 10 9 39 39 H 0.96997 * 119.99992 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6360 1.9708 -0.8636 5 6 3.5683 1.4432 -0.0709 6 7 1.6068 2.1151 1.2321 7 6 2.1476 1.4589 2.3964 8 6 1.1523 1.4266 3.5753 9 6 0.3921 2.7620 3.7180 10 7 1.2429 3.9084 3.5163 11 6 1.1654 4.3514 2.1055 12 6 2.0052 3.5413 1.2265 13 1 3.0409 3.6207 1.5569 14 6 1.8984 4.0736 -0.1793 15 1 1.4842 3.4543 -0.9613 16 6 2.3295 5.3512 -0.4673 17 7 2.8344 6.1051 0.4847 18 14 2.1965 6.0113 -2.2098 19 1 1.5988 4.9736 -3.0879 20 1 1.3360 7.2215 -2.2163 21 1 3.5496 6.3631 -2.7104 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3632 -1.0276 -0.0005 25 1 1.8934 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 3.9316 2.4709 -0.0714 28 1 3.9725 0.9149 0.7926 29 1 3.8898 0.9442 -0.9852 30 1 2.4138 0.4356 2.1322 31 1 3.0488 1.9853 2.7106 32 1 1.6996 1.2291 4.4971 33 1 0.4334 0.6242 3.4102 34 1 -0.0407 2.8159 4.7169 35 1 -0.4141 2.7883 2.9850 36 1 0.9949 4.6578 4.1448 37 1 1.4870 5.3909 2.0428 38 1 0.1309 4.2820 1.7691 39 1 3.1380 7.0038 0.2820 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219515063.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:14 Heat of formation + Delta-G solvation = -4.313854 kcal Electronic energy + Delta-G solvation = -17496.541046 eV Core-core repulsion = 15052.503439 eV Total energy + Delta-G solvation = -2444.037607 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.52671 -37.14201 -35.34135 -33.27085 -32.59931 -30.36959 -28.36531 -26.83357 -25.17502 -24.39864 -22.07862 -21.33220 -19.63598 -18.18289 -17.89495 -16.45029 -16.15160 -15.88563 -15.52934 -15.39854 -14.58757 -14.40386 -14.13401 -13.77491 -13.53331 -13.23477 -12.89154 -12.86537 -12.62349 -12.45762 -12.24853 -12.20363 -11.90957 -11.81671 -11.53616 -11.50296 -11.17633 -10.92848 -10.48198 -10.48095 -9.15452 -8.70560 -8.10269 -6.21114 1.39204 1.42197 1.52421 2.42122 3.17210 3.46784 3.67466 4.06231 4.23507 4.32852 4.39937 4.47087 4.63712 4.68186 4.79086 4.81746 4.88949 4.91900 5.01226 5.02772 5.13360 5.18301 5.24810 5.29245 5.34357 5.36270 5.40819 5.56535 5.67457 5.70228 5.78504 5.93095 6.24375 6.47427 6.50919 6.83698 6.99641 7.04458 7.48826 8.95932 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.023177 B = 0.012233 C = 0.009260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.799797 B = 2288.396753 C = 3023.104462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.110 4.110 3 C 0.082 3.918 4 H 0.073 0.927 5 C -0.166 4.166 6 N -0.520 5.520 7 C 0.064 3.936 8 C -0.097 4.097 9 C 0.072 3.928 10 N -0.698 5.698 11 C 0.090 3.910 12 C 0.233 3.767 13 H -0.033 1.033 14 C -0.521 4.521 15 H 0.069 0.931 16 C 0.013 3.987 17 N -0.919 5.919 18 Si 0.951 3.049 19 H -0.266 1.266 20 H -0.283 1.283 21 H -0.285 1.285 22 H 0.050 0.950 23 H 0.039 0.961 24 H 0.062 0.938 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.032 0.968 28 H 0.046 0.954 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.002 0.998 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.021 0.979 36 H 0.337 0.663 37 H 0.068 0.932 38 H 0.001 0.999 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.697 -9.785 2.351 10.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.148 4.148 3 C -0.027 4.027 4 H 0.090 0.910 5 C -0.225 4.225 6 N -0.244 5.244 7 C -0.065 4.065 8 C -0.136 4.136 9 C -0.059 4.059 10 N -0.327 5.327 11 C -0.039 4.039 12 C 0.126 3.874 13 H -0.016 1.016 14 C -0.560 4.560 15 H 0.087 0.913 16 C -0.185 4.185 17 N -0.559 5.559 18 Si 0.777 3.223 19 H -0.190 1.190 20 H -0.209 1.209 21 H -0.211 1.211 22 H 0.069 0.931 23 H 0.058 0.942 24 H 0.081 0.919 25 H 0.089 0.911 26 H 0.083 0.917 27 H 0.051 0.949 28 H 0.065 0.935 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.020 0.980 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.039 0.961 36 H 0.153 0.847 37 H 0.086 0.914 38 H 0.019 0.981 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.580 -10.018 2.316 10.887 hybrid contribution 0.312 1.493 -0.884 1.763 sum -3.268 -8.525 1.432 9.241 Atomic orbital electron populations 1.21546 0.95224 1.00792 1.01475 1.21651 0.96849 0.94558 1.01745 1.21783 0.92400 0.94455 0.94029 0.90951 1.22285 0.98558 1.00675 1.00985 1.61734 1.58709 1.02763 1.01148 1.21742 0.95380 0.97706 0.91670 1.21992 0.98190 0.96488 0.96935 1.21537 0.93485 0.91524 0.99335 1.59936 1.57613 1.09179 1.06018 1.20869 0.96463 1.00511 0.86086 1.17895 0.91421 0.84506 0.93628 1.01573 1.21772 1.40130 0.99042 0.95020 0.91334 1.25677 0.95061 0.97365 1.00432 1.70026 1.42875 1.09505 1.33473 0.85604 0.77446 0.78345 0.80865 1.18987 1.20851 1.21111 0.93133 0.94170 0.91936 0.91095 0.91705 0.94861 0.93465 0.91948 0.91420 0.97987 0.91665 0.91037 0.91335 0.96114 0.84658 0.91351 0.98089 0.93112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.78 9.78 71.98 0.70 -3.08 16 2 C -0.11 -3.28 5.24 30.60 0.16 -3.12 16 3 C 0.08 3.15 1.89 44.92 0.09 3.23 16 4 H 0.07 3.16 5.34 -2.39 -0.01 3.15 16 5 C -0.17 -6.39 8.54 71.98 0.61 -5.78 16 6 N -0.52 -21.77 3.57 -864.01 -3.09 -24.85 16 7 C 0.06 2.41 3.82 87.26 0.33 2.74 16 8 C -0.10 -3.09 6.42 31.49 0.20 -2.88 16 9 C 0.07 2.46 6.00 87.26 0.52 2.99 16 10 N -0.70 -28.35 6.44 -526.39 -3.39 -31.74 16 11 C 0.09 4.39 5.15 83.95 0.43 4.82 16 12 C 0.23 11.77 1.03 41.82 0.04 11.82 16 13 H -0.03 -1.97 6.89 -2.39 -0.02 -1.99 16 14 C -0.52 -27.95 6.88 25.60 0.18 -27.77 16 15 H 0.07 3.65 5.26 -2.91 -0.02 3.63 16 16 C 0.01 0.73 5.28 84.65 0.45 1.18 16 17 N -0.92 -52.83 11.44 21.45 0.25 -52.59 16 18 Si 0.95 43.49 29.54 68.60 2.03 45.52 16 19 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 20 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 21 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 22 H 0.05 1.59 7.69 -2.39 -0.02 1.58 16 23 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 26 H 0.06 1.81 5.99 -2.39 -0.01 1.79 16 27 H 0.03 1.53 6.42 -2.39 -0.02 1.52 16 28 H 0.05 1.69 6.85 -2.39 -0.02 1.67 16 29 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.07 2.24 4.87 -2.39 -0.01 2.23 16 31 H 0.00 0.08 7.16 -2.39 -0.02 0.06 16 32 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 33 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.02 0.78 7.16 -2.39 -0.02 0.76 16 36 H 0.34 12.24 8.89 -89.69 -0.80 11.44 16 37 H 0.07 3.77 6.00 -2.39 -0.01 3.75 16 38 H 0.00 0.05 7.37 -2.38 -0.02 0.03 16 39 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 Total: -1.00 -59.24 283.56 -0.25 -59.49 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: 0.23 Total: 20.03 kcal Atomic # 6 Polarization: -19.57 SS G_CDS: 3.72 Total: -15.85 kcal Atomic # 7 Polarization: -102.95 SS G_CDS: -6.23 Total: -109.18 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -59.24 -0.25 -59.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219515063.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.174 kcal (2) G-P(sol) polarization free energy of solvation -59.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds