Wall clock time and date at job start Mon Mar 30 2020 03:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47208 * 2 1 4 4 N 1.46898 * 109.47131 * 174.84322 * 3 2 1 5 5 C 1.40085 * 111.00169 * 62.32322 * 4 3 2 6 6 C 1.54515 * 111.51459 * 171.85814 * 5 4 3 7 7 C 1.50743 * 108.93967 * 76.01820 * 6 5 4 8 8 H 1.08995 * 108.78900 * 28.23517 * 7 6 5 9 9 C 1.53001 * 108.78645 * 146.56375 * 7 6 5 10 10 N 1.48067 * 112.93549 * 267.34377 * 7 6 5 11 11 C 1.47689 * 113.80351 * 41.75368 * 10 7 6 12 12 H 1.09000 * 108.94191 * 280.43481 * 11 10 7 13 13 C 1.50698 * 109.00065 * 161.71778 * 11 10 7 14 14 H 1.07999 * 119.99411 * 272.76289 * 13 11 10 15 15 C 1.37874 * 120.00436 * 92.76893 * 13 11 10 16 16 N 1.31518 * 120.00268 * 175.23357 * 15 13 11 17 17 Si 1.86795 * 119.99788 * 355.23194 * 15 13 11 18 18 H 1.48495 * 109.47446 * 91.49893 * 17 15 13 19 19 H 1.48501 * 109.47301 * 211.49888 * 17 15 13 20 20 H 1.48504 * 109.47391 * 331.49562 * 17 15 13 21 21 C 1.47690 * 111.00071 * 293.68268 * 4 3 2 22 22 H 1.09001 * 109.47115 * 59.99750 * 1 2 3 23 23 H 1.08997 * 109.47300 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46764 * 299.99714 * 1 2 3 25 25 H 1.09002 * 109.46764 * 240.00286 * 2 1 3 26 26 H 1.09001 * 109.47115 * 120.00250 * 2 1 3 27 27 H 1.09003 * 109.47153 * 54.84342 * 3 2 1 28 28 H 1.09003 * 109.47491 * 294.84579 * 3 2 1 29 29 H 1.08998 * 109.06930 * 292.38159 * 5 4 3 30 30 H 1.08996 * 109.06915 * 51.40005 * 5 4 3 31 31 H 1.09001 * 109.55759 * 195.85850 * 6 5 4 32 32 H 1.08999 * 109.55738 * 316.17641 * 6 5 4 33 33 H 1.09004 * 109.46867 * 60.00486 * 9 7 6 34 34 H 1.08998 * 109.46665 * 179.97438 * 9 7 6 35 35 H 1.08993 * 109.47534 * 300.00199 * 9 7 6 36 36 H 1.00900 * 110.99676 * 275.64753 * 10 7 6 37 37 H 0.96999 * 119.99823 * 179.97438 * 16 15 13 38 38 H 1.09000 * 109.73991 * 327.64843 * 21 4 3 39 39 H 1.09006 * 109.73198 * 88.29525 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5037 1.4443 0.1245 5 6 4.1013 0.8031 -0.9682 6 6 5.6370 0.9731 -0.9546 7 6 6.2219 0.0527 0.0862 8 1 5.5659 -0.8102 0.2003 9 6 7.5910 -0.4305 -0.3967 10 7 6.3866 0.7043 1.4056 11 6 5.2472 1.5598 1.7942 12 1 5.3317 2.5169 1.2795 13 6 5.2980 1.7989 3.2813 14 1 4.8300 1.0985 3.9570 15 6 5.9419 2.9119 3.7790 16 7 5.9063 3.1707 5.0680 17 14 6.8647 4.0522 2.6226 18 1 5.9549 5.1310 2.1607 19 1 8.0208 4.6515 3.3365 20 1 7.3524 3.2805 1.4513 21 6 3.9234 0.9293 1.4435 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.6032 1.9823 0.8402 28 1 1.7541 1.9290 -0.9325 29 1 3.8603 -0.2593 -0.9332 30 1 3.7052 1.2277 -1.8906 31 1 6.0410 0.7192 -1.9346 32 1 5.8877 2.0055 -0.7111 33 1 8.2480 0.4269 -0.5428 34 1 8.0245 -1.0972 0.3487 35 1 7.4759 -0.9649 -1.3396 36 1 7.2552 1.2158 1.4503 37 1 6.3596 3.9535 5.4182 38 1 3.1795 1.1928 2.1953 39 1 4.0324 -0.1544 1.3977 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219519659.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:46 Heat of formation + Delta-G solvation = -20.651194 kcal Electronic energy + Delta-G solvation = -16964.481345 eV Core-core repulsion = 14519.735297 eV Total energy + Delta-G solvation = -2444.746048 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.76132 -37.33640 -35.26459 -33.74091 -33.24407 -29.69971 -28.63134 -27.32037 -25.63526 -23.56610 -22.79781 -21.16640 -20.37315 -18.91032 -17.21381 -16.74042 -16.41331 -16.09466 -15.80354 -15.26289 -14.91125 -14.71773 -14.26619 -14.06855 -13.55604 -13.46584 -13.08299 -12.87842 -12.86256 -12.59557 -12.35650 -12.22530 -12.05014 -11.99798 -11.82390 -11.59766 -11.42290 -11.34380 -11.07979 -10.75870 -9.00452 -8.84481 -8.27732 -6.31508 1.32659 1.34711 1.44237 2.34087 2.98745 3.09958 3.71796 3.87642 4.03484 4.04088 4.12514 4.26557 4.39459 4.47938 4.53092 4.58461 4.67031 4.76035 4.79274 4.80971 4.86838 4.96468 4.97817 5.09853 5.15340 5.16861 5.20615 5.26241 5.35541 5.40478 5.45582 5.68619 6.21852 6.31809 6.53474 6.66636 6.78819 6.90861 7.35889 8.89504 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.022207 B = 0.010437 C = 0.008152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.560830 B = 2682.050896 C = 3433.833466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.155 4.155 3 C 0.061 3.939 4 N -0.571 5.571 5 C 0.077 3.923 6 C -0.143 4.143 7 C 0.075 3.925 8 H 0.058 0.942 9 C -0.142 4.142 10 N -0.704 5.704 11 C 0.198 3.802 12 H 0.007 0.993 13 C -0.497 4.497 14 H 0.029 0.971 15 C 0.016 3.984 16 N -0.947 5.947 17 Si 0.952 3.048 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.250 1.250 21 C 0.099 3.901 22 H 0.067 0.933 23 H 0.059 0.941 24 H 0.051 0.949 25 H 0.067 0.933 26 H 0.042 0.958 27 H 0.063 0.937 28 H 0.088 0.912 29 H 0.024 0.976 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.045 0.955 33 H 0.050 0.950 34 H 0.053 0.947 35 H 0.081 0.919 36 H 0.325 0.675 37 H 0.265 0.735 38 H 0.058 0.942 39 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.436 -5.026 -16.193 17.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.194 4.194 3 C -0.066 4.066 4 N -0.294 5.294 5 C -0.052 4.052 6 C -0.183 4.183 7 C -0.035 4.035 8 H 0.076 0.924 9 C -0.199 4.199 10 N -0.337 5.337 11 C 0.091 3.909 12 H 0.025 0.975 13 C -0.537 4.537 14 H 0.047 0.953 15 C -0.182 4.182 16 N -0.588 5.588 17 Si 0.777 3.223 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.174 1.174 21 C -0.028 4.028 22 H 0.086 0.914 23 H 0.078 0.922 24 H 0.070 0.930 25 H 0.085 0.915 26 H 0.061 0.939 27 H 0.081 0.919 28 H 0.106 0.894 29 H 0.042 0.958 30 H 0.101 0.899 31 H 0.114 0.886 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.099 0.901 36 H 0.143 0.857 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -4.472 -4.997 -15.773 17.139 hybrid contribution 0.414 0.562 -0.040 0.699 sum -4.058 -4.435 -15.813 16.917 Atomic orbital electron populations 1.21648 0.93984 1.02092 1.02249 1.22112 0.97812 0.98138 1.01383 1.22279 0.85636 0.96007 1.02684 1.59230 1.08202 1.59506 1.02509 1.21036 0.94407 0.96248 0.93542 1.22219 0.95660 0.99856 1.00550 1.21510 0.97738 0.96475 0.87759 0.92431 1.21933 0.95434 1.01108 1.01458 1.61087 1.05357 1.39778 1.27520 1.19068 0.88246 0.90920 0.92671 0.97536 1.21211 1.33971 1.06765 0.91751 0.95309 1.25913 0.96588 0.99293 0.96382 1.70058 1.45345 1.28870 1.14511 0.85703 0.78295 0.78954 0.79338 1.20294 1.21359 1.17404 1.21590 0.96603 0.95930 0.88683 0.91425 0.92201 0.93026 0.91455 0.93919 0.91882 0.89389 0.95767 0.89856 0.88638 0.93567 0.93058 0.92752 0.90064 0.85715 0.92609 0.92370 0.95168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.91 71.98 0.71 -2.08 16 2 C -0.16 -3.81 5.31 30.59 0.16 -3.65 16 3 C 0.06 1.71 5.17 86.30 0.45 2.15 16 4 N -0.57 -19.57 4.16 -912.26 -3.80 -23.37 16 5 C 0.08 2.20 4.47 88.05 0.39 2.60 16 6 C -0.14 -4.27 5.19 30.38 0.16 -4.11 16 7 C 0.07 2.48 2.66 43.96 0.12 2.60 16 8 H 0.06 1.98 6.53 -2.39 -0.02 1.97 16 9 C -0.14 -3.78 8.92 71.98 0.64 -3.14 16 10 N -0.70 -30.36 6.27 -476.42 -2.99 -33.35 16 11 C 0.20 9.46 1.58 43.29 0.07 9.53 16 12 H 0.01 0.35 4.72 -2.39 -0.01 0.34 16 13 C -0.50 -29.02 8.88 25.60 0.23 -28.80 16 14 H 0.03 1.88 8.06 -2.91 -0.02 1.85 16 15 C 0.02 0.94 5.47 84.65 0.46 1.40 16 16 N -0.95 -59.94 13.96 21.45 0.30 -59.64 16 17 Si 0.95 45.68 26.55 68.60 1.82 47.50 16 18 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 19 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 20 H -0.25 -11.03 5.89 99.48 0.59 -10.44 16 21 C 0.10 4.16 3.85 85.43 0.33 4.49 16 22 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.07 1.53 6.90 -2.39 -0.02 1.51 16 26 H 0.04 1.23 7.05 -2.39 -0.02 1.22 16 27 H 0.06 1.90 7.91 -2.39 -0.02 1.88 16 28 H 0.09 2.07 8.01 -2.39 -0.02 2.05 16 29 H 0.02 0.68 6.19 -2.39 -0.01 0.66 16 30 H 0.08 2.01 7.93 -2.39 -0.02 2.00 16 31 H 0.10 2.21 7.68 -2.39 -0.02 2.19 16 32 H 0.05 1.61 7.19 -2.39 -0.02 1.60 16 33 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 34 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.08 1.69 8.07 -2.39 -0.02 1.67 16 36 H 0.32 14.21 6.97 -89.69 -0.63 13.58 16 37 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 38 H 0.06 2.64 7.27 -2.39 -0.02 2.62 16 39 H 0.03 1.27 6.49 -2.38 -0.02 1.25 16 Total: -1.00 -65.59 288.45 -0.68 -66.27 By element: Atomic # 1 Polarization: 21.34 SS G_CDS: 0.26 Total: 21.60 kcal Atomic # 6 Polarization: -22.73 SS G_CDS: 3.72 Total: -19.01 kcal Atomic # 7 Polarization: -109.87 SS G_CDS: -6.49 Total: -116.36 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 1.82 Total: 47.50 kcal Total: -65.59 -0.68 -66.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219519659.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.617 kcal (2) G-P(sol) polarization free energy of solvation -65.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds