Wall clock time and date at job start Mon Mar 30 2020 03:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47613 * 2 1 4 4 H 1.08990 * 109.47075 * 181.31177 * 3 2 1 5 5 C 1.50701 * 109.46732 * 301.30816 * 3 2 1 6 6 H 1.08006 * 119.99835 * 119.99809 * 5 3 2 7 7 C 1.37874 * 120.00216 * 299.99885 * 5 3 2 8 8 N 1.31515 * 120.00156 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00141 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.46890 * 59.99609 * 9 7 5 11 11 H 1.48492 * 109.47449 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47129 * 300.00279 * 9 7 5 13 13 N 1.46902 * 109.46996 * 61.30679 * 3 2 1 14 14 C 1.47901 * 110.99805 * 62.82378 * 13 3 2 15 15 C 1.53994 * 107.05813 * 145.83980 * 14 13 3 16 16 C 1.54599 * 105.14011 * 358.77941 * 15 14 13 17 17 H 1.08993 * 110.72886 * 96.57046 * 16 15 14 18 18 C 1.52998 * 110.72369 * 219.68249 * 16 15 14 19 19 N 1.46895 * 109.47265 * 293.54247 * 18 16 15 20 20 C 1.46899 * 111.00221 * 179.97438 * 19 18 16 21 21 C 1.48533 * 110.99774 * 180.21927 * 13 3 2 22 22 H 1.09004 * 109.46813 * 305.44501 * 1 2 3 23 23 H 1.09001 * 109.47008 * 65.44015 * 1 2 3 24 24 H 1.08997 * 109.47609 * 185.44700 * 1 2 3 25 25 H 1.09001 * 109.46900 * 239.99781 * 2 1 3 26 26 H 1.09003 * 109.46853 * 119.99766 * 2 1 3 27 27 H 0.97001 * 120.00074 * 179.97438 * 8 7 5 28 28 H 1.09004 * 109.91527 * 26.49051 * 14 13 3 29 29 H 1.09002 * 109.92075 * 265.19640 * 14 13 3 30 30 H 1.08994 * 110.31532 * 239.85940 * 15 14 13 31 31 H 1.09003 * 110.30558 * 117.68762 * 15 14 13 32 32 H 1.09006 * 109.46986 * 173.53769 * 18 16 15 33 33 H 1.09009 * 109.47206 * 53.54513 * 18 16 15 34 34 H 1.00900 * 111.00219 * 303.95487 * 19 18 16 35 35 H 1.08998 * 109.47409 * 300.00512 * 20 19 18 36 36 H 1.09006 * 109.46870 * 60.00328 * 20 19 18 37 37 H 1.08996 * 109.47271 * 179.97438 * 20 19 18 38 38 H 1.08996 * 110.66480 * 81.84635 * 21 13 3 39 39 H 1.08998 * 110.66808 * 318.71941 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1298 1.4425 -0.0235 5 6 1.5115 2.1621 -1.2140 6 1 0.8929 3.0395 -1.0948 7 6 1.8175 1.7006 -2.4766 8 7 2.5702 0.6320 -2.6217 9 14 1.1628 2.5931 -3.9814 10 1 1.6583 3.9931 -3.9811 11 1 1.6308 1.9020 -5.2095 12 1 -0.3219 2.5937 -3.9496 13 7 1.5765 2.1258 1.2149 14 6 2.1317 1.4862 2.4274 15 6 2.3682 2.6040 3.4598 16 6 1.9442 3.9085 2.7468 17 1 0.9208 4.1765 3.0093 18 6 2.9051 5.0491 3.0882 19 7 2.7839 5.3812 4.5140 20 6 3.6945 6.4746 4.8791 21 6 2.0492 3.5335 1.2471 22 1 -0.3633 0.5960 0.8373 23 1 -0.3633 0.4271 -0.9347 24 1 -0.3634 -1.0230 0.0975 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.7852 0.3071 -3.5101 28 1 3.0752 0.9950 2.1892 29 1 1.4213 0.7599 2.8226 30 1 3.4220 2.6484 3.7347 31 1 1.7524 2.4388 4.3440 32 1 2.6569 5.9250 2.4887 33 1 3.9278 4.7394 2.8729 34 1 1.8304 5.6095 4.7524 35 1 4.7225 6.1744 4.6763 36 1 3.4522 7.3606 4.2921 37 1 3.5841 6.7006 5.9397 38 1 1.4015 4.1707 0.6450 39 1 3.0820 3.6004 0.9052 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221300351.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:47 Heat of formation + Delta-G solvation = -22.919334 kcal Electronic energy + Delta-G solvation = -16495.782425 eV Core-core repulsion = 14050.938024 eV Total energy + Delta-G solvation = -2444.844402 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.15462 -37.37823 -35.67478 -33.45402 -31.44395 -30.34480 -27.93972 -26.94584 -25.08173 -23.78831 -22.66867 -21.31811 -20.27810 -18.22379 -17.21212 -16.73046 -16.46622 -15.86218 -15.64466 -15.01904 -14.72002 -14.63261 -14.10471 -13.92069 -13.62080 -13.36267 -12.98579 -12.79081 -12.68335 -12.61535 -12.43674 -12.36054 -11.87150 -11.70510 -11.63788 -11.52556 -11.36623 -11.17629 -10.77574 -10.47138 -9.36479 -8.96932 -8.07575 -6.17619 1.41780 1.43307 1.50505 2.43415 3.18079 3.25301 3.49227 3.93241 4.03026 4.08254 4.40795 4.47828 4.54876 4.59719 4.64249 4.72618 4.76665 4.79341 4.87517 4.90512 4.92986 5.05206 5.10314 5.21216 5.25534 5.30822 5.41471 5.47481 5.54753 5.73575 5.76732 5.86950 6.02679 6.28471 6.40606 6.50538 6.70839 6.94800 7.50103 8.98192 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.031162 B = 0.007136 C = 0.006194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.303602 B = 3922.655998 C = 4519.419405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.105 4.105 3 C 0.216 3.784 4 H -0.045 1.045 5 C -0.504 4.504 6 H 0.054 0.946 7 C 0.014 3.986 8 N -0.920 5.920 9 Si 0.952 3.048 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.271 1.271 13 N -0.515 5.515 14 C 0.031 3.969 15 C -0.097 4.097 16 C -0.078 4.078 17 H 0.085 0.915 18 C 0.076 3.924 19 N -0.698 5.698 20 C 0.028 3.972 21 C 0.058 3.942 22 H 0.053 0.947 23 H 0.031 0.969 24 H 0.038 0.962 25 H 0.060 0.940 26 H 0.025 0.975 27 H 0.260 0.740 28 H 0.016 0.984 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.032 0.968 33 H 0.060 0.940 34 H 0.348 0.652 35 H 0.058 0.942 36 H 0.024 0.976 37 H 0.082 0.918 38 H 0.064 0.936 39 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.645 7.728 12.186 14.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.143 4.143 3 C 0.108 3.892 4 H -0.028 1.028 5 C -0.543 4.543 6 H 0.072 0.928 7 C -0.185 4.185 8 N -0.560 5.560 9 Si 0.778 3.222 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.197 1.197 13 N -0.239 5.239 14 C -0.097 4.097 15 C -0.135 4.135 16 C -0.098 4.098 17 H 0.104 0.896 18 C -0.054 4.054 19 N -0.329 5.329 20 C -0.122 4.122 21 C -0.070 4.070 22 H 0.072 0.928 23 H 0.050 0.950 24 H 0.057 0.943 25 H 0.078 0.922 26 H 0.043 0.957 27 H 0.069 0.931 28 H 0.034 0.966 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.101 0.899 32 H 0.051 0.949 33 H 0.079 0.921 34 H 0.167 0.833 35 H 0.077 0.923 36 H 0.042 0.958 37 H 0.100 0.900 38 H 0.082 0.918 39 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -0.691 7.084 12.234 14.154 hybrid contribution 0.510 0.850 -1.735 1.998 sum -0.181 7.934 10.499 13.161 Atomic orbital electron populations 1.21300 0.95666 0.98636 1.00777 1.21390 0.96580 0.97386 0.98969 1.19215 0.90269 0.92147 0.87539 1.02775 1.21210 1.30705 1.11679 0.90701 0.92774 1.25628 0.95522 0.95789 1.01522 1.70015 1.38537 1.24328 1.23164 0.85700 0.78913 0.78687 0.78883 1.19864 1.21144 1.19653 1.64736 1.55166 1.01931 1.02059 1.22895 0.97008 0.97910 0.91890 1.22214 1.01395 0.92624 0.97313 1.22015 0.99686 0.94894 0.93190 0.89625 1.21836 0.98905 0.96201 0.88427 1.60351 1.12077 1.42876 1.17584 1.22224 0.97019 0.91459 1.01487 1.22918 0.97035 0.91060 0.96020 0.92790 0.94968 0.94318 0.92199 0.95664 0.93126 0.96573 0.90939 0.91781 0.89870 0.94939 0.92117 0.83347 0.92270 0.95767 0.89979 0.91778 0.96478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.77 9.47 71.98 0.68 -4.08 16 2 C -0.10 -5.19 5.31 30.59 0.16 -5.03 16 3 C 0.22 11.16 1.45 44.17 0.06 11.23 16 4 H -0.05 -2.67 7.99 -2.39 -0.02 -2.68 16 5 C -0.50 -27.77 6.87 25.60 0.18 -27.60 16 6 H 0.05 2.98 6.94 -2.91 -0.02 2.96 16 7 C 0.01 0.77 5.30 84.65 0.45 1.22 16 8 N -0.92 -53.61 11.33 21.45 0.24 -53.37 16 9 Si 0.95 44.05 29.54 68.60 2.03 46.08 16 10 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 11 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 12 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 13 N -0.51 -22.25 4.30 -862.24 -3.71 -25.96 16 14 C 0.03 1.15 5.45 86.45 0.47 1.62 16 15 C -0.10 -2.85 6.33 31.47 0.20 -2.65 16 16 C -0.08 -2.28 3.25 -9.59 -0.03 -2.31 16 17 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 18 C 0.08 1.90 5.01 86.30 0.43 2.33 16 19 N -0.70 -14.42 6.67 -537.15 -3.58 -18.00 16 20 C 0.03 0.47 10.70 127.69 1.37 1.83 16 21 C 0.06 2.27 5.19 86.65 0.45 2.72 16 22 H 0.05 2.31 7.48 -2.38 -0.02 2.29 16 23 H 0.03 1.55 7.38 -2.39 -0.02 1.53 16 24 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.06 3.33 6.10 -2.39 -0.01 3.31 16 26 H 0.02 1.14 7.19 -2.39 -0.02 1.13 16 27 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 28 H 0.02 0.64 7.62 -2.38 -0.02 0.62 16 29 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 30 H 0.06 1.85 7.80 -2.39 -0.02 1.84 16 31 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.03 0.79 8.14 -2.38 -0.02 0.77 16 33 H 0.06 1.65 8.08 -2.38 -0.02 1.63 16 34 H 0.35 6.21 8.82 -89.69 -0.79 5.42 16 35 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.02 0.39 8.14 -2.38 -0.02 0.37 16 37 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.06 2.59 7.41 -2.39 -0.02 2.57 16 39 H 0.02 0.72 7.91 -2.39 -0.02 0.70 16 Total: -1.00 -60.30 301.65 -0.39 -60.69 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: 0.20 Total: 11.28 kcal Atomic # 6 Polarization: -25.14 SS G_CDS: 4.42 Total: -20.72 kcal Atomic # 7 Polarization: -90.29 SS G_CDS: -7.05 Total: -97.34 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -60.30 -0.39 -60.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221300351.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.774 kcal (2) G-P(sol) polarization free energy of solvation -60.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds