Wall clock time and date at job start Mon Mar 30 2020 03:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47390 * 2 1 4 4 H 1.08997 * 109.46799 * 304.95969 * 3 2 1 5 5 C 1.50705 * 109.47159 * 184.96769 * 3 2 1 6 6 H 1.08001 * 119.99672 * 245.42882 * 5 3 2 7 7 C 1.37876 * 120.00374 * 65.42100 * 5 3 2 8 8 N 1.31505 * 120.00166 * 196.40142 * 7 5 3 9 9 Si 1.86809 * 119.99725 * 16.40016 * 7 5 3 10 10 H 1.48502 * 109.46769 * 85.94411 * 9 7 5 11 11 H 1.48499 * 109.46783 * 205.94014 * 9 7 5 12 12 H 1.48494 * 109.47249 * 325.93947 * 9 7 5 13 13 N 1.46891 * 109.47289 * 64.96218 * 3 2 1 14 14 C 1.46904 * 111.00080 * 263.16882 * 13 3 2 15 15 H 1.08999 * 110.87273 * 28.46188 * 14 13 3 16 16 C 1.55140 * 111.02254 * 152.32629 * 14 13 3 17 17 C 1.54314 * 103.02006 * 153.76418 * 16 14 13 18 18 H 1.08994 * 110.02471 * 97.19687 * 17 16 14 19 19 C 1.53004 * 109.88900 * 218.31298 * 17 16 14 20 20 N 1.47442 * 107.23356 * 337.71447 * 17 16 14 21 21 C 1.46903 * 111.00013 * 236.74708 * 20 17 16 22 22 C 1.47846 * 108.56651 * 359.01025 * 20 17 16 23 23 H 1.08998 * 109.47142 * 298.30038 * 1 2 3 24 24 H 1.09002 * 109.46942 * 58.30035 * 1 2 3 25 25 H 1.08998 * 109.47655 * 178.29793 * 1 2 3 26 26 H 1.08996 * 109.47082 * 239.99037 * 2 1 3 27 27 H 1.09000 * 109.46730 * 119.99754 * 2 1 3 28 28 H 0.97000 * 120.00134 * 179.97438 * 8 7 5 29 29 H 1.00908 * 111.00101 * 139.21844 * 13 3 2 30 30 H 1.08998 * 110.70780 * 35.37543 * 16 14 13 31 31 H 1.09004 * 110.70615 * 272.14520 * 16 14 13 32 32 H 1.08996 * 109.47083 * 179.22481 * 19 17 16 33 33 H 1.08995 * 109.46951 * 59.21705 * 19 17 16 34 34 H 1.09008 * 109.46743 * 299.21840 * 19 17 16 35 35 H 1.08994 * 109.47197 * 59.99901 * 21 20 17 36 36 H 1.09003 * 109.46696 * 179.97438 * 21 20 17 37 37 H 1.08993 * 109.46790 * 299.99633 * 21 20 17 38 38 H 1.08995 * 110.37483 * 142.92428 * 22 20 17 39 39 H 1.09001 * 110.37926 * 265.26569 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6059 1.9812 -0.8422 5 6 3.5420 1.4442 -0.1230 6 1 4.1501 1.8090 0.6916 7 6 4.1399 0.9799 -1.2754 8 7 5.4194 0.6761 -1.2759 9 14 3.1324 0.7822 -2.8360 10 1 3.0961 2.0735 -3.5685 11 1 3.7515 -0.2578 -3.6964 12 1 1.7489 0.3739 -2.4836 13 7 1.6507 2.0995 1.2547 14 6 0.4209 2.8836 1.0789 15 1 -0.2026 2.4571 0.2931 16 6 -0.3640 2.9944 2.4125 17 6 -1.1543 4.3089 2.2426 18 1 -2.1686 4.0938 1.9067 19 6 -1.1959 5.0667 3.5712 20 7 -0.4500 5.1140 1.2279 21 6 -0.0814 6.4312 1.7638 22 6 0.7472 4.3689 0.7837 23 1 -0.3633 0.4872 0.9048 24 1 -0.3633 0.5400 -0.8744 25 1 -0.3634 -1.0272 -0.0305 26 1 1.8933 -0.5140 -0.8899 27 1 1.8932 -0.5138 0.8900 28 1 5.8400 0.3491 -2.0865 29 1 2.3995 2.6759 1.6086 30 1 0.3204 3.0627 3.2580 31 1 -1.0424 2.1495 2.5317 32 1 -1.7435 5.9999 3.4401 33 1 -0.1789 5.2847 3.8970 34 1 -1.6950 4.4550 4.3228 35 1 0.5744 6.3025 2.6248 36 1 0.4370 7.0041 0.9949 37 1 -0.9819 6.9639 2.0693 38 1 0.9116 4.5163 -0.2837 39 1 1.6230 4.6850 1.3505 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226147768.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:20 Heat of formation + Delta-G solvation = 5.405061 kcal Electronic energy + Delta-G solvation = -16708.146660 eV Core-core repulsion = 14264.530497 eV Total energy + Delta-G solvation = -2443.616164 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.42174 -36.24332 -32.77809 -31.67397 -31.17672 -29.46249 -26.85962 -25.30296 -24.48821 -22.46699 -20.46603 -19.78433 -19.37522 -16.95525 -16.26108 -15.32222 -15.01163 -14.44625 -13.86146 -13.57466 -13.34887 -13.04066 -12.74893 -12.62969 -12.27688 -11.97199 -11.86520 -11.72273 -11.47939 -11.23618 -11.02658 -10.83627 -10.76160 -10.55744 -10.49356 -10.04542 -9.81028 -9.37413 -9.13219 -8.43589 -8.20774 -7.42539 -6.14996 -4.09903 3.27460 3.36608 3.40206 4.09870 4.39732 4.82957 4.93337 4.99489 5.16261 5.29112 5.39502 5.44938 5.47594 5.58272 5.68598 5.76022 5.82970 5.92272 6.05552 6.06992 6.07681 6.17034 6.27330 6.28981 6.39903 6.54122 6.70176 6.77890 7.02008 7.05213 7.14837 7.20569 7.45482 7.65485 7.97956 8.33444 8.59880 8.93766 9.51577 10.97864 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.035164 B = 0.007555 C = 0.007049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.078029 B = 3705.023843 C = 3971.471526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.110 4.110 3 C 0.193 3.807 4 H 0.003 0.997 5 C -0.533 4.533 6 H 0.075 0.925 7 C 0.079 3.921 8 N -0.889 5.889 9 Si 0.862 3.138 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.251 1.251 13 N -0.668 5.668 14 C 0.080 3.920 15 H 0.087 0.913 16 C -0.127 4.127 17 C 0.064 3.936 18 H 0.081 0.919 19 C -0.166 4.166 20 N -0.530 5.530 21 C 0.018 3.982 22 C 0.014 3.986 23 H 0.056 0.944 24 H 0.037 0.963 25 H 0.034 0.966 26 H 0.051 0.949 27 H 0.058 0.942 28 H 0.264 0.736 29 H 0.339 0.661 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.030 0.970 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.409 6.933 5.890 15.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.148 4.148 3 C 0.084 3.916 4 H 0.020 0.980 5 C -0.571 4.571 6 H 0.093 0.907 7 C -0.124 4.124 8 N -0.526 5.526 9 Si 0.689 3.311 10 H -0.206 1.206 11 H -0.214 1.214 12 H -0.176 1.176 13 N -0.298 5.298 14 C -0.032 4.032 15 H 0.105 0.895 16 C -0.166 4.166 17 C -0.044 4.044 18 H 0.099 0.901 19 C -0.224 4.224 20 N -0.254 5.254 21 C -0.131 4.131 22 C -0.115 4.115 23 H 0.075 0.925 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.159 0.841 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.049 0.951 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -12.885 6.383 5.599 15.431 hybrid contribution 0.554 0.564 -0.787 1.116 sum -12.331 6.947 4.811 14.949 Atomic orbital electron populations 1.21904 0.98700 0.99547 1.00618 1.21856 0.92644 0.99385 1.00924 1.19461 0.95411 0.90736 0.86005 0.97952 1.21164 0.89330 1.43874 1.02734 0.90703 1.24882 0.94729 0.93941 0.98842 1.69985 1.11527 1.42764 1.28318 0.87217 0.82063 0.78049 0.83769 1.20586 1.21426 1.17552 1.60565 1.05115 1.32941 1.31199 1.22826 0.93829 0.90304 0.96251 0.89500 1.22856 0.98648 0.96249 0.98809 1.22447 0.98723 0.93002 0.90240 0.90091 1.22342 1.01938 1.00561 0.97558 1.63682 1.23146 1.02959 1.35637 1.22559 1.00148 0.91646 0.98696 1.23848 0.91277 0.95286 1.01122 0.92536 0.94414 0.94652 0.93072 0.92294 0.92618 0.84150 0.91130 0.91062 0.92263 0.92381 0.92291 0.95139 0.91998 0.91539 0.90468 0.93393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 8.65 37.15 0.32 -2.45 16 2 C -0.11 -2.42 4.96 -26.74 -0.13 -2.55 16 3 C 0.19 4.44 1.71 -68.87 -0.12 4.33 16 4 H 0.00 0.07 6.23 -51.93 -0.32 -0.26 16 5 C -0.53 -14.59 8.98 -34.44 -0.31 -14.90 16 6 H 0.07 2.21 7.74 -52.49 -0.41 1.81 16 7 C 0.08 2.25 5.32 -17.82 -0.09 2.15 16 8 N -0.89 -26.76 13.96 55.43 0.77 -25.98 16 9 Si 0.86 21.11 25.86 -169.99 -4.40 16.71 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.25 -5.83 5.58 56.52 0.32 -5.52 16 13 N -0.67 -13.25 6.06 -98.72 -0.60 -13.85 16 14 C 0.08 1.35 2.10 -65.57 -0.14 1.21 16 15 H 0.09 1.56 6.03 -51.93 -0.31 1.24 16 16 C -0.13 -1.79 6.17 -24.91 -0.15 -1.95 16 17 C 0.06 0.82 4.02 -66.73 -0.27 0.55 16 18 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 19 C -0.17 -1.75 7.84 37.16 0.29 -1.45 16 20 N -0.53 -7.52 5.44 -231.57 -1.26 -8.78 16 21 C 0.02 0.22 8.29 60.07 0.50 0.71 16 22 C 0.01 0.23 6.31 -2.30 -0.01 0.21 16 23 H 0.06 0.99 6.58 -51.93 -0.34 0.64 16 24 H 0.04 0.68 7.98 -51.93 -0.41 0.27 16 25 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.05 1.19 5.05 -51.93 -0.26 0.93 16 27 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 28 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 29 H 0.34 6.88 7.42 -39.29 -0.29 6.59 16 30 H 0.07 1.02 7.85 -51.93 -0.41 0.61 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.06 0.57 6.67 -51.93 -0.35 0.22 16 33 H 0.06 0.64 6.64 -51.93 -0.35 0.29 16 34 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 35 H 0.03 0.36 6.44 -51.93 -0.33 0.02 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.69 6.74 -51.93 -0.35 0.34 16 38 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.05 0.78 7.38 -51.93 -0.38 0.40 16 LS Contribution 289.52 15.07 4.36 4.36 Total: -1.00 -28.54 289.52 -7.94 -36.48 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -6.70 Total: 5.20 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: -0.12 Total: -14.13 kcal Atomic # 7 Polarization: -47.53 SS G_CDS: -1.09 Total: -48.61 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.40 Total: 16.71 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.54 -7.94 -36.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226147768.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.881 kcal (2) G-P(sol) polarization free energy of solvation -28.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds