Wall clock time and date at job start Mon Mar 30 2020 03:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47390 * 2 1 4 4 H 1.08997 * 109.46799 * 304.95969 * 3 2 1 5 5 C 1.50705 * 109.47159 * 184.96769 * 3 2 1 6 6 H 1.08001 * 119.99672 * 245.42882 * 5 3 2 7 7 C 1.37876 * 120.00374 * 65.42100 * 5 3 2 8 8 N 1.31505 * 120.00166 * 196.40142 * 7 5 3 9 9 Si 1.86809 * 119.99725 * 16.40016 * 7 5 3 10 10 H 1.48502 * 109.46769 * 85.94411 * 9 7 5 11 11 H 1.48499 * 109.46783 * 205.94014 * 9 7 5 12 12 H 1.48494 * 109.47249 * 325.93947 * 9 7 5 13 13 N 1.46891 * 109.47289 * 64.96218 * 3 2 1 14 14 C 1.46904 * 111.00080 * 263.16882 * 13 3 2 15 15 H 1.08999 * 110.87273 * 28.46188 * 14 13 3 16 16 C 1.55140 * 111.02254 * 152.32629 * 14 13 3 17 17 C 1.54314 * 103.02006 * 153.76418 * 16 14 13 18 18 H 1.08994 * 110.02471 * 97.19687 * 17 16 14 19 19 C 1.53004 * 109.88900 * 218.31298 * 17 16 14 20 20 N 1.47442 * 107.23356 * 337.71447 * 17 16 14 21 21 C 1.46903 * 111.00013 * 236.74708 * 20 17 16 22 22 C 1.47846 * 108.56651 * 359.01025 * 20 17 16 23 23 H 1.08998 * 109.47142 * 298.30038 * 1 2 3 24 24 H 1.09002 * 109.46942 * 58.30035 * 1 2 3 25 25 H 1.08998 * 109.47655 * 178.29793 * 1 2 3 26 26 H 1.08996 * 109.47082 * 239.99037 * 2 1 3 27 27 H 1.09000 * 109.46730 * 119.99754 * 2 1 3 28 28 H 0.97000 * 120.00134 * 179.97438 * 8 7 5 29 29 H 1.00908 * 111.00101 * 139.21844 * 13 3 2 30 30 H 1.08998 * 110.70780 * 35.37543 * 16 14 13 31 31 H 1.09004 * 110.70615 * 272.14520 * 16 14 13 32 32 H 1.08996 * 109.47083 * 179.22481 * 19 17 16 33 33 H 1.08995 * 109.46951 * 59.21705 * 19 17 16 34 34 H 1.09008 * 109.46743 * 299.21840 * 19 17 16 35 35 H 1.08994 * 109.47197 * 59.99901 * 21 20 17 36 36 H 1.09003 * 109.46696 * 179.97438 * 21 20 17 37 37 H 1.08993 * 109.46790 * 299.99633 * 21 20 17 38 38 H 1.08995 * 110.37483 * 142.92428 * 22 20 17 39 39 H 1.09001 * 110.37926 * 265.26569 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6059 1.9812 -0.8422 5 6 3.5420 1.4442 -0.1230 6 1 4.1501 1.8090 0.6916 7 6 4.1399 0.9799 -1.2754 8 7 5.4194 0.6761 -1.2759 9 14 3.1324 0.7822 -2.8360 10 1 3.0961 2.0735 -3.5685 11 1 3.7515 -0.2578 -3.6964 12 1 1.7489 0.3739 -2.4836 13 7 1.6507 2.0995 1.2547 14 6 0.4209 2.8836 1.0789 15 1 -0.2026 2.4571 0.2931 16 6 -0.3640 2.9944 2.4125 17 6 -1.1543 4.3089 2.2426 18 1 -2.1686 4.0938 1.9067 19 6 -1.1959 5.0667 3.5712 20 7 -0.4500 5.1140 1.2279 21 6 -0.0814 6.4312 1.7638 22 6 0.7472 4.3689 0.7837 23 1 -0.3633 0.4872 0.9048 24 1 -0.3633 0.5400 -0.8744 25 1 -0.3634 -1.0272 -0.0305 26 1 1.8933 -0.5140 -0.8899 27 1 1.8932 -0.5138 0.8900 28 1 5.8400 0.3491 -2.0865 29 1 2.3995 2.6759 1.6086 30 1 0.3204 3.0627 3.2580 31 1 -1.0424 2.1495 2.5317 32 1 -1.7435 5.9999 3.4401 33 1 -0.1789 5.2847 3.8970 34 1 -1.6950 4.4550 4.3228 35 1 0.5744 6.3025 2.6248 36 1 0.4370 7.0041 0.9949 37 1 -0.9819 6.9639 2.0693 38 1 0.9116 4.5163 -0.2837 39 1 1.6230 4.6850 1.3505 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226147768.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:20 Heat of formation + Delta-G solvation = -15.595321 kcal Electronic energy + Delta-G solvation = -16709.057305 eV Core-core repulsion = 14264.530497 eV Total energy + Delta-G solvation = -2444.526808 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.60984 -37.87329 -34.61818 -33.38478 -32.22309 -30.90523 -28.57063 -26.37334 -25.75320 -24.24092 -21.82938 -21.52216 -20.46510 -18.94449 -17.61153 -16.85194 -16.44144 -15.58717 -15.54267 -14.97354 -14.68021 -14.55912 -14.39788 -14.13572 -13.70862 -13.43677 -13.16533 -12.91080 -12.78646 -12.63233 -12.46559 -12.31211 -12.16711 -11.95923 -11.80506 -11.67102 -11.40699 -11.17168 -11.08964 -10.56550 -9.37068 -8.97813 -8.34475 -6.33156 1.32342 1.36025 1.45625 2.32934 2.94655 3.01501 3.61553 3.74782 3.82016 4.18034 4.23873 4.41020 4.42329 4.47930 4.53371 4.56374 4.63582 4.64357 4.66323 4.85705 4.88835 4.92554 4.96418 5.09990 5.16165 5.21226 5.24486 5.30828 5.43062 5.44602 5.56406 5.80947 5.95168 6.05793 6.17090 6.48735 6.67689 6.84815 7.32458 8.81956 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.035164 B = 0.007555 C = 0.007049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.078029 B = 3705.023843 C = 3971.471526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 C 0.200 3.800 4 H -0.001 1.001 5 C -0.536 4.536 6 H 0.037 0.963 7 C 0.025 3.975 8 N -0.937 5.937 9 Si 0.923 3.077 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.229 1.229 13 N -0.667 5.667 14 C 0.076 3.924 15 H 0.082 0.918 16 C -0.118 4.118 17 C 0.065 3.935 18 H 0.090 0.910 19 C -0.160 4.160 20 N -0.538 5.538 21 C 0.017 3.983 22 C 0.019 3.981 23 H 0.065 0.935 24 H 0.042 0.958 25 H 0.056 0.944 26 H 0.037 0.963 27 H 0.046 0.954 28 H 0.266 0.734 29 H 0.333 0.667 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.051 0.949 34 H 0.071 0.929 35 H 0.032 0.968 36 H 0.059 0.941 37 H 0.087 0.913 38 H 0.060 0.940 39 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.266 7.361 6.085 18.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.149 4.149 3 C 0.091 3.909 4 H 0.017 0.983 5 C -0.574 4.574 6 H 0.055 0.945 7 C -0.174 4.174 8 N -0.576 5.576 9 Si 0.747 3.253 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.152 1.152 13 N -0.296 5.296 14 C -0.035 4.035 15 H 0.100 0.900 16 C -0.157 4.157 17 C -0.043 4.043 18 H 0.108 0.892 19 C -0.218 4.218 20 N -0.262 5.262 21 C -0.131 4.131 22 C -0.111 4.111 23 H 0.084 0.916 24 H 0.061 0.939 25 H 0.075 0.925 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.152 0.848 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.091 0.909 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.051 0.949 36 H 0.078 0.922 37 H 0.106 0.894 38 H 0.078 0.922 39 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -15.775 6.824 5.813 18.144 hybrid contribution 1.485 0.481 -0.755 1.734 sum -14.291 7.305 5.058 16.828 Atomic orbital electron populations 1.21795 0.95406 1.01241 1.01340 1.21770 0.95565 0.97859 0.99708 1.19296 0.92360 0.91993 0.87290 0.98326 1.21477 0.91678 1.42742 1.01545 0.94478 1.25703 0.95714 0.93837 1.02168 1.70114 1.13552 1.44680 1.29303 0.86228 0.81570 0.78053 0.79420 1.20259 1.21264 1.15167 1.60573 1.05938 1.33721 1.29395 1.22880 0.92469 0.90193 0.97945 0.90006 1.22802 0.98431 0.97684 0.96765 1.22516 0.98476 0.92202 0.91126 0.89184 1.22285 1.01989 1.01109 0.96415 1.63677 1.21970 1.03727 1.36854 1.22630 1.01228 0.90610 0.98648 1.23668 0.92094 0.95230 1.00086 0.91576 0.93936 0.92487 0.94407 0.93503 0.92520 0.84825 0.91487 0.90017 0.90915 0.92992 0.90970 0.94917 0.92246 0.89443 0.92194 0.94138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.78 8.65 71.98 0.62 -4.15 16 2 C -0.11 -4.74 4.96 30.59 0.15 -4.59 16 3 C 0.20 9.19 1.71 44.17 0.08 9.26 16 4 H 0.00 -0.04 6.23 -2.39 -0.01 -0.06 16 5 C -0.54 -30.16 8.98 25.60 0.23 -29.93 16 6 H 0.04 2.31 7.74 -2.91 -0.02 2.28 16 7 C 0.02 1.43 5.32 84.66 0.45 1.88 16 8 N -0.94 -58.12 13.96 21.45 0.30 -57.82 16 9 Si 0.92 43.64 25.86 68.60 1.77 45.42 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 11 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 12 H -0.23 -9.89 5.58 99.48 0.55 -9.34 16 13 N -0.67 -26.31 6.06 -466.25 -2.83 -29.14 16 14 C 0.08 2.48 2.10 46.30 0.10 2.58 16 15 H 0.08 2.77 6.03 -2.39 -0.01 2.75 16 16 C -0.12 -3.07 6.17 31.77 0.20 -2.87 16 17 C 0.06 1.47 4.02 45.26 0.18 1.65 16 18 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 19 C -0.16 -2.84 7.84 71.98 0.56 -2.27 16 20 N -0.54 -14.16 5.44 -886.56 -4.83 -18.99 16 21 C 0.02 0.37 8.29 127.69 1.06 1.43 16 22 C 0.02 0.60 6.31 86.77 0.55 1.15 16 23 H 0.07 2.11 6.58 -2.39 -0.02 2.09 16 24 H 0.04 1.40 7.98 -2.39 -0.02 1.38 16 25 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.04 1.70 5.05 -2.39 -0.01 1.69 16 27 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 29 H 0.33 13.82 7.42 -89.69 -0.67 13.16 16 30 H 0.07 1.80 7.85 -2.39 -0.02 1.78 16 31 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 32 H 0.07 1.11 6.67 -2.39 -0.02 1.09 16 33 H 0.05 1.00 6.64 -2.39 -0.02 0.98 16 34 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 35 H 0.03 0.70 6.44 -2.39 -0.02 0.68 16 36 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.09 1.53 6.74 -2.39 -0.02 1.52 16 38 H 0.06 2.07 8.14 -2.39 -0.02 2.06 16 39 H 0.04 1.32 7.38 -2.39 -0.02 1.30 16 Total: -1.00 -62.03 289.52 -1.21 -63.23 By element: Atomic # 1 Polarization: 22.96 SS G_CDS: 0.20 Total: 23.16 kcal Atomic # 6 Polarization: -30.05 SS G_CDS: 4.18 Total: -25.87 kcal Atomic # 7 Polarization: -98.59 SS G_CDS: -7.36 Total: -105.94 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 1.77 Total: 45.42 kcal Total: -62.03 -1.21 -63.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226147768.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.638 kcal (2) G-P(sol) polarization free energy of solvation -62.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds