Wall clock time and date at job start Mon Mar 30 2020 03:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.47038 * 2 1 4 4 H 1.09000 * 109.47256 * 305.00282 * 3 2 1 5 5 C 1.50697 * 109.47134 * 185.00438 * 3 2 1 6 6 H 1.07998 * 119.99945 * 240.00465 * 5 3 2 7 7 C 1.37877 * 120.00134 * 59.99934 * 5 3 2 8 8 N 1.31523 * 119.99917 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00368 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47184 * 59.99972 * 9 7 5 11 11 H 1.48495 * 109.47184 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46893 * 300.00431 * 9 7 5 13 13 N 1.46901 * 109.46644 * 65.00551 * 3 2 1 14 14 C 1.47901 * 110.99959 * 69.87623 * 13 3 2 15 15 C 1.53994 * 107.05727 * 145.84457 * 14 13 3 16 16 C 1.54590 * 105.13982 * 358.76665 * 15 14 13 17 17 H 1.08999 * 110.72321 * 96.58618 * 16 15 14 18 18 C 1.53001 * 110.72660 * 219.68601 * 16 15 14 19 19 H 1.08996 * 109.47352 * 176.14928 * 18 16 15 20 20 C 1.53001 * 109.47190 * 296.15340 * 18 16 15 21 21 N 1.46905 * 109.46947 * 56.15158 * 18 16 15 22 22 C 1.48735 * 111.04110 * 187.44724 * 13 3 2 23 23 H 1.09001 * 109.47049 * 180.02562 * 1 2 3 24 24 H 1.09009 * 109.46843 * 299.99479 * 1 2 3 25 25 H 1.08997 * 109.47788 * 59.99300 * 1 2 3 26 26 H 1.08999 * 109.46388 * 240.00803 * 2 1 3 27 27 H 1.08988 * 109.47576 * 120.00604 * 2 1 3 28 28 H 0.97000 * 120.00028 * 180.02562 * 8 7 5 29 29 H 1.08996 * 109.91894 * 26.48712 * 14 13 3 30 30 H 1.09004 * 110.07989 * 265.28507 * 14 13 3 31 31 H 1.09008 * 110.30692 * 239.85494 * 15 14 13 32 32 H 1.08997 * 110.39457 * 117.73603 * 15 14 13 33 33 H 1.09002 * 109.47389 * 179.97438 * 20 18 16 34 34 H 1.08999 * 109.47105 * 299.99941 * 20 18 16 35 35 H 1.08996 * 109.47310 * 59.99562 * 20 18 16 36 36 H 1.00901 * 110.99869 * 176.04901 * 21 18 16 37 37 H 1.00896 * 110.99543 * 300.00023 * 21 18 16 38 38 H 1.09008 * 110.83343 * 81.96418 * 22 13 3 39 39 H 1.08995 * 110.58460 * 318.77425 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1239 6 1 4.1472 1.8889 0.6522 7 6 4.1432 0.8785 -1.2281 8 7 3.4060 0.3376 -2.1735 9 14 6.0049 0.8801 -1.3815 10 1 6.5967 0.1453 -0.2347 11 1 6.3976 0.2169 -2.6507 12 1 6.5004 2.2801 -1.3810 13 7 1.6514 2.0992 1.2553 14 6 2.4068 1.5444 2.3995 15 6 2.6434 2.7012 3.3881 16 6 2.0064 3.9408 2.7190 17 1 0.9980 4.1079 3.0975 18 6 2.8764 5.1805 2.9363 19 1 2.4450 6.0256 2.4000 20 6 2.9402 5.5033 4.4305 21 7 4.2321 4.9216 2.4329 22 6 1.9718 3.5512 1.2199 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.8932 -0.5137 -0.8901 27 1 1.8934 -0.5139 0.8898 28 1 3.8291 -0.0609 -2.9501 29 1 3.3623 1.1478 2.0565 30 1 1.8293 0.7559 2.8822 31 1 3.7116 2.8589 3.5372 32 1 2.1559 2.4928 4.3404 33 1 3.5604 6.3862 4.5854 34 1 1.9344 5.6953 4.8040 35 1 3.3716 4.6581 4.9667 36 1 4.8085 5.7465 2.5061 37 1 4.6538 4.1419 2.9147 38 1 1.1942 4.1071 0.6958 39 1 2.9441 3.7179 0.7565 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227213383.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:39 Heat of formation + Delta-G solvation = -23.618177 kcal Electronic energy + Delta-G solvation = -16976.082111 eV Core-core repulsion = 14531.207406 eV Total energy + Delta-G solvation = -2444.874706 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.31855 -37.43434 -34.96056 -33.36170 -30.94935 -29.80905 -29.16403 -27.79403 -24.89309 -23.42153 -22.53682 -20.94894 -19.73752 -18.43993 -17.59399 -16.93020 -16.10658 -15.59687 -15.36922 -14.75032 -14.50645 -14.25918 -14.01493 -13.93826 -13.62987 -13.26508 -13.13369 -12.85536 -12.63468 -12.47341 -12.38946 -12.08996 -11.84644 -11.64775 -11.53307 -11.36645 -11.28554 -11.08915 -10.90107 -10.37833 -9.41719 -8.84061 -7.97342 -6.17020 1.40136 1.41554 1.48504 2.44569 3.20954 3.60078 3.72577 3.84482 4.08564 4.26892 4.40037 4.46693 4.57047 4.63225 4.75282 4.83993 4.88995 4.92236 5.00916 5.05186 5.10187 5.19166 5.22207 5.32611 5.38554 5.45032 5.49211 5.54312 5.64010 5.71161 5.82533 6.10812 6.25900 6.41646 6.48655 6.63774 6.72675 7.04427 7.51595 8.98400 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.023353 B = 0.010312 C = 0.007851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.698173 B = 2714.656682 C = 3565.451720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.103 4.103 3 C 0.212 3.788 4 H -0.006 1.006 5 C -0.536 4.536 6 H 0.059 0.941 7 C 0.016 3.984 8 N -0.916 5.916 9 Si 0.947 3.053 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.276 1.276 13 N -0.520 5.520 14 C 0.037 3.963 15 C -0.111 4.111 16 C -0.075 4.075 17 H 0.083 0.917 18 C 0.100 3.900 19 H 0.077 0.923 20 C -0.175 4.175 21 N -0.854 5.854 22 C 0.047 3.953 23 H 0.045 0.955 24 H 0.055 0.945 25 H 0.030 0.970 26 H 0.061 0.939 27 H 0.027 0.973 28 H 0.259 0.741 29 H 0.039 0.961 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.346 0.654 37 H 0.339 0.661 38 H 0.049 0.951 39 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.715 7.397 12.059 14.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.142 4.142 3 C 0.104 3.896 4 H 0.012 0.988 5 C -0.575 4.575 6 H 0.077 0.923 7 C -0.183 4.183 8 N -0.556 5.556 9 Si 0.774 3.226 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.201 1.201 13 N -0.243 5.243 14 C -0.092 4.092 15 C -0.149 4.149 16 C -0.095 4.095 17 H 0.101 0.899 18 C -0.012 4.012 19 H 0.095 0.905 20 C -0.234 4.234 21 N -0.387 5.387 22 C -0.081 4.081 23 H 0.065 0.935 24 H 0.075 0.925 25 H 0.050 0.950 26 H 0.079 0.921 27 H 0.046 0.954 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.159 0.841 37 H 0.154 0.846 38 H 0.067 0.933 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.619 7.060 11.230 13.363 hybrid contribution 2.140 0.046 0.101 2.142 sum 0.520 7.105 11.331 13.385 Atomic orbital electron populations 1.21567 0.96471 0.99722 1.00518 1.21379 0.94379 0.98381 1.00016 1.19113 0.92132 0.91370 0.86961 0.98759 1.21933 0.93786 1.36681 1.05075 0.92336 1.25643 1.01704 0.95289 0.95688 1.70018 1.36224 1.39521 1.09881 0.85784 0.81658 0.78087 0.77113 1.19814 1.21330 1.20099 1.64988 1.52472 1.02897 1.03941 1.22733 0.97099 0.97382 0.91954 1.22350 1.00398 0.94055 0.98088 1.22073 0.98891 0.94178 0.94343 0.89853 1.21272 0.89578 0.96485 0.93889 0.90492 1.22523 1.02897 1.01621 0.96404 1.58819 1.04267 1.10838 1.64759 1.23058 0.99330 0.89158 0.96557 0.93546 0.92547 0.95032 0.92101 0.95416 0.93198 0.94292 0.92539 0.91702 0.90390 0.91944 0.91466 0.92548 0.84059 0.84608 0.93286 0.93255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.28 9.80 71.98 0.71 -4.57 16 2 C -0.10 -5.12 5.24 30.60 0.16 -4.96 16 3 C 0.21 10.98 1.74 44.17 0.08 11.06 16 4 H -0.01 -0.33 8.11 -2.39 -0.02 -0.35 16 5 C -0.54 -29.40 6.39 25.60 0.16 -29.24 16 6 H 0.06 3.20 6.03 -2.91 -0.02 3.18 16 7 C 0.02 0.88 5.29 84.65 0.45 1.32 16 8 N -0.92 -53.81 11.30 21.45 0.24 -53.57 16 9 Si 0.95 44.60 29.54 68.60 2.03 46.63 16 10 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 11 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 13 N -0.52 -22.59 4.70 -861.68 -4.05 -26.64 16 14 C 0.04 1.44 5.33 86.45 0.46 1.90 16 15 C -0.11 -3.29 5.44 31.47 0.17 -3.12 16 16 C -0.08 -2.23 2.96 -9.59 -0.03 -2.25 16 17 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 18 C 0.10 2.41 3.25 44.91 0.15 2.55 16 19 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 20 C -0.18 -3.18 9.30 71.98 0.67 -2.51 16 21 N -0.85 -22.50 8.19 -168.67 -1.38 -23.88 16 22 C 0.05 1.87 5.79 86.61 0.50 2.37 16 23 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.06 2.25 7.75 -2.38 -0.02 2.23 16 25 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.06 3.40 5.95 -2.39 -0.01 3.39 16 27 H 0.03 1.34 7.37 -2.39 -0.02 1.32 16 28 H 0.26 14.58 8.31 -92.71 -0.77 13.80 16 29 H 0.04 1.75 5.49 -2.39 -0.01 1.74 16 30 H 0.06 2.13 8.12 -2.38 -0.02 2.11 16 31 H 0.06 1.84 5.68 -2.38 -0.01 1.82 16 32 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.06 1.03 7.33 -2.39 -0.02 1.01 16 36 H 0.35 7.42 9.07 -89.69 -0.81 6.61 16 37 H 0.34 8.92 6.76 -89.70 -0.61 8.31 16 38 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 39 H 0.05 2.24 5.94 -2.39 -0.01 2.23 16 Total: -1.00 -60.87 292.62 -0.07 -60.94 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: -0.39 Total: 23.98 kcal Atomic # 6 Polarization: -30.93 SS G_CDS: 3.47 Total: -27.45 kcal Atomic # 7 Polarization: -98.90 SS G_CDS: -5.19 Total: -104.09 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -60.87 -0.07 -60.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227213383.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.325 kcal (2) G-P(sol) polarization free energy of solvation -60.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds