Wall clock time and date at job start Mon Mar 30 2020 03:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47469 * 2 1 4 4 H 1.09002 * 109.47070 * 305.00072 * 3 2 1 5 5 C 1.50701 * 109.47419 * 184.99997 * 3 2 1 6 6 H 1.07998 * 120.00129 * 240.00616 * 5 3 2 7 7 C 1.37880 * 119.99861 * 59.99898 * 5 3 2 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47432 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46890 * 120.00210 * 9 7 5 12 12 H 1.48501 * 109.47062 * 240.00257 * 9 7 5 13 13 N 1.46901 * 109.46860 * 65.00222 * 3 2 1 14 14 C 1.48527 * 111.00253 * 62.60428 * 13 3 2 15 15 C 1.54935 * 103.22739 * 159.72483 * 14 13 3 16 16 H 1.08991 * 110.72958 * 80.94416 * 15 14 13 17 17 C 1.53003 * 110.72243 * 204.23191 * 15 14 13 18 18 N 1.46906 * 109.46789 * 288.49407 * 17 15 14 19 19 C 1.54594 * 102.91996 * 322.58040 * 15 14 13 20 20 C 1.47908 * 111.00080 * 180.02562 * 13 3 2 21 21 H 1.09004 * 109.91088 * 333.50249 * 20 13 3 22 22 C 1.52993 * 109.91830 * 94.79759 * 20 13 3 23 23 H 1.08997 * 109.47151 * 300.00410 * 1 2 3 24 24 H 1.09006 * 109.46918 * 59.99351 * 1 2 3 25 25 H 1.08988 * 109.47178 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.47149 * 240.00076 * 2 1 3 27 27 H 1.08997 * 109.47163 * 120.00146 * 2 1 3 28 28 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 29 29 H 1.09005 * 110.66854 * 278.15421 * 14 13 3 30 30 H 1.08999 * 110.66773 * 41.28234 * 14 13 3 31 31 H 1.08998 * 109.47599 * 48.49128 * 17 15 14 32 32 H 1.08998 * 109.47352 * 168.50145 * 17 15 14 33 33 H 1.00899 * 110.99842 * 179.97438 * 18 17 15 34 34 H 1.00894 * 111.00175 * 303.95974 * 18 17 15 35 35 H 1.08995 * 110.31208 * 263.04423 * 19 15 14 36 36 H 1.09004 * 110.39024 * 140.91740 * 19 15 14 37 37 H 1.09006 * 109.47005 * 60.00432 * 22 20 13 38 38 H 1.09004 * 109.47081 * 179.97438 * 22 20 13 39 39 H 1.08998 * 109.47555 * 299.99986 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9816 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0050 0.8799 -1.3811 10 1 6.5989 1.5441 -0.1930 11 1 6.4961 -0.5192 -1.4627 12 1 6.4000 1.6156 -2.6091 13 7 1.6515 2.0992 1.2553 14 6 2.2773 1.4280 2.4231 15 6 2.2100 2.5088 3.5312 16 1 1.2207 2.5317 3.9882 17 6 3.2906 2.2692 4.5876 18 7 2.9405 1.0873 5.3867 19 6 2.4845 3.8173 2.7551 20 6 2.1281 3.4989 1.2909 21 1 3.0119 3.6062 0.6619 22 6 1.0221 4.4387 0.8069 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5140 -0.8900 25 1 -0.3633 -1.0275 -0.0005 26 1 1.8933 -0.5139 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 3.8293 -0.0604 -2.9503 29 1 1.7061 0.5455 2.7114 30 1 3.3122 1.1637 2.2059 31 1 4.2492 2.1043 4.0959 32 1 3.3613 3.1402 5.2391 33 1 3.6395 0.9075 6.0918 34 1 2.0262 1.1888 5.8011 35 1 3.5359 4.0925 2.8375 36 1 1.8528 4.6219 3.1315 37 1 0.1513 4.3391 1.4550 38 1 1.3807 5.4676 0.8365 39 1 0.7460 4.1790 -0.2151 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228078930.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:24 Heat of formation + Delta-G solvation = -11.104181 kcal Electronic energy + Delta-G solvation = -17017.152332 eV Core-core repulsion = 14572.820274 eV Total energy + Delta-G solvation = -2444.332058 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.78050 -35.19371 -33.57312 -31.60348 -30.17181 -29.49115 -26.26494 -24.95738 -23.76881 -22.59664 -20.23593 -19.25682 -18.81953 -16.17740 -15.83572 -15.12788 -14.69197 -14.28314 -13.93451 -13.46291 -13.03012 -12.92568 -12.40181 -12.30957 -11.83142 -11.71801 -11.29501 -11.23274 -10.94864 -10.79609 -10.52447 -10.46892 -10.25433 -9.97914 -9.93012 -9.77833 -9.57076 -9.33785 -8.97036 -8.49209 -8.29733 -7.07526 -5.93680 -4.05900 3.28035 3.36694 3.39556 4.43202 4.68256 5.05139 5.27643 5.30488 5.43572 5.54422 5.65240 5.90381 5.97145 6.15131 6.22275 6.26316 6.41366 6.45850 6.50466 6.55744 6.62675 6.75044 6.82116 6.89483 7.06597 7.10184 7.17387 7.26235 7.28898 7.43097 7.55612 7.69588 7.82189 8.07902 8.24274 8.37285 8.53183 9.05363 9.60310 11.05441 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.020406 B = 0.010333 C = 0.009209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.816501 B = 2709.168292 C = 3039.714991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.110 4.110 3 C 0.206 3.794 4 H 0.037 0.963 5 C -0.537 4.537 6 H 0.057 0.943 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.885 3.115 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.514 5.514 14 C 0.062 3.938 15 C -0.093 4.093 16 H 0.069 0.931 17 C 0.072 3.928 18 N -0.847 5.847 19 C -0.119 4.119 20 C 0.061 3.939 21 H 0.068 0.932 22 C -0.127 4.127 23 H 0.047 0.953 24 H 0.038 0.962 25 H 0.024 0.976 26 H 0.090 0.910 27 H 0.032 0.968 28 H 0.259 0.741 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.018 0.982 33 H 0.335 0.665 34 H 0.337 0.663 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.048 0.952 38 H 0.041 0.959 39 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.161 4.388 10.196 11.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.149 4.149 3 C 0.099 3.901 4 H 0.055 0.945 5 C -0.576 4.576 6 H 0.075 0.925 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.713 3.287 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.238 5.238 14 C -0.066 4.066 15 C -0.112 4.112 16 H 0.087 0.913 17 C -0.059 4.059 18 N -0.375 5.375 19 C -0.157 4.157 20 C -0.048 4.048 21 H 0.086 0.914 22 C -0.185 4.185 23 H 0.066 0.934 24 H 0.057 0.943 25 H 0.043 0.957 26 H 0.109 0.891 27 H 0.051 0.949 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.036 0.964 33 H 0.147 0.853 34 H 0.149 0.851 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.060 0.940 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.665 3.871 9.324 10.441 hybrid contribution 1.988 0.631 0.523 2.150 sum -0.677 4.503 9.847 10.849 Atomic orbital electron populations 1.21703 0.98968 0.98309 1.00496 1.21564 0.92163 0.99209 1.01927 1.19371 0.92929 0.91198 0.86575 0.94545 1.21762 0.92910 1.37715 1.05249 0.92471 1.24910 0.97637 0.95170 0.95784 1.69890 1.34568 1.38482 1.09404 0.86660 0.86487 0.77699 0.77875 1.19985 1.21041 1.21114 1.65026 1.53932 1.00500 1.04374 1.22947 0.99298 0.95433 0.88920 1.22099 0.97469 0.96191 0.95480 0.91303 1.21846 0.99310 0.89963 0.94763 1.58631 1.06872 1.41639 1.30401 1.22470 1.00304 0.96811 0.96154 1.22246 0.97117 0.91042 0.94432 0.91429 1.21689 0.98520 0.97066 1.01258 0.93414 0.94332 0.95693 0.89137 0.94923 0.93045 0.91597 0.92434 0.91031 0.96387 0.85293 0.85114 0.92465 0.92320 0.93259 0.93973 0.92876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 9.80 37.16 0.36 -2.54 16 2 C -0.11 -2.68 5.14 -26.73 -0.14 -2.82 16 3 C 0.21 5.13 1.81 -68.86 -0.12 5.01 16 4 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 5 C -0.54 -14.37 6.34 -34.44 -0.22 -14.59 16 6 H 0.06 1.54 6.03 -52.49 -0.32 1.23 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.74 16 8 N -0.88 -25.08 11.29 55.43 0.63 -24.45 16 9 Si 0.88 21.29 29.54 -169.99 -5.02 16.27 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 13 N -0.51 -10.99 4.39 -216.03 -0.95 -11.94 16 14 C 0.06 1.24 4.65 -1.90 -0.01 1.24 16 15 C -0.09 -1.50 3.22 -88.76 -0.29 -1.79 16 16 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 17 C 0.07 1.01 6.10 -3.82 -0.02 0.99 16 18 N -0.85 -10.72 9.54 -10.36 -0.10 -10.81 16 19 C -0.12 -1.93 6.15 -25.36 -0.16 -2.09 16 20 C 0.06 1.18 2.72 -66.63 -0.18 1.00 16 21 H 0.07 1.51 6.29 -51.93 -0.33 1.18 16 22 C -0.13 -2.21 9.32 37.15 0.35 -1.86 16 23 H 0.05 0.97 7.75 -51.93 -0.40 0.57 16 24 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.02 0.47 8.14 -51.94 -0.42 0.05 16 26 H 0.09 2.45 5.95 -51.92 -0.31 2.14 16 27 H 0.03 0.79 6.76 -51.93 -0.35 0.44 16 28 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.07 1.36 7.55 -51.93 -0.39 0.97 16 30 H 0.06 1.31 5.87 -51.93 -0.30 1.01 16 31 H 0.07 1.11 7.99 -51.93 -0.42 0.69 16 32 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.34 3.51 9.08 -39.29 -0.36 3.15 16 34 H 0.34 3.75 8.99 -39.30 -0.35 3.40 16 35 H 0.06 0.91 7.85 -51.93 -0.41 0.50 16 36 H 0.06 0.85 7.69 -51.93 -0.40 0.45 16 37 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 297.88 15.07 4.49 4.49 Total: -1.00 -27.80 297.88 -8.32 -36.13 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -6.85 Total: 6.02 kcal Atomic # 6 Polarization: -15.18 SS G_CDS: -0.52 Total: -15.70 kcal Atomic # 7 Polarization: -46.78 SS G_CDS: -0.42 Total: -47.20 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -27.80 -8.32 -36.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228078930.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.024 kcal (2) G-P(sol) polarization free energy of solvation -27.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds