Wall clock time and date at job start Mon Mar 30 2020 03:09:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53002 * 109.47469 * 2 1
4 4 H 1.09002 * 109.47070 * 305.00072 * 3 2 1
5 5 C 1.50701 * 109.47419 * 184.99997 * 3 2 1
6 6 H 1.07998 * 120.00129 * 240.00616 * 5 3 2
7 7 C 1.37880 * 119.99861 * 59.99898 * 5 3 2
8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 3
9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 3
10 10 H 1.48502 * 109.47432 * 0.02562 * 9 7 5
11 11 H 1.48506 * 109.46890 * 120.00210 * 9 7 5
12 12 H 1.48501 * 109.47062 * 240.00257 * 9 7 5
13 13 N 1.46901 * 109.46860 * 65.00222 * 3 2 1
14 14 C 1.48527 * 111.00253 * 62.60428 * 13 3 2
15 15 C 1.54935 * 103.22739 * 159.72483 * 14 13 3
16 16 H 1.08991 * 110.72958 * 80.94416 * 15 14 13
17 17 C 1.53003 * 110.72243 * 204.23191 * 15 14 13
18 18 N 1.46906 * 109.46789 * 288.49407 * 17 15 14
19 19 C 1.54594 * 102.91996 * 322.58040 * 15 14 13
20 20 C 1.47908 * 111.00080 * 180.02562 * 13 3 2
21 21 H 1.09004 * 109.91088 * 333.50249 * 20 13 3
22 22 C 1.52993 * 109.91830 * 94.79759 * 20 13 3
23 23 H 1.08997 * 109.47151 * 300.00410 * 1 2 3
24 24 H 1.09006 * 109.46918 * 59.99351 * 1 2 3
25 25 H 1.08988 * 109.47178 * 179.97438 * 1 2 3
26 26 H 1.09008 * 109.47149 * 240.00076 * 2 1 3
27 27 H 1.08997 * 109.47163 * 120.00146 * 2 1 3
28 28 H 0.97002 * 119.99768 * 179.97438 * 8 7 5
29 29 H 1.09005 * 110.66854 * 278.15421 * 14 13 3
30 30 H 1.08999 * 110.66773 * 41.28234 * 14 13 3
31 31 H 1.08998 * 109.47599 * 48.49128 * 17 15 14
32 32 H 1.08998 * 109.47352 * 168.50145 * 17 15 14
33 33 H 1.00899 * 110.99842 * 179.97438 * 18 17 15
34 34 H 1.00894 * 111.00175 * 303.95974 * 18 17 15
35 35 H 1.08995 * 110.31208 * 263.04423 * 19 15 14
36 36 H 1.09004 * 110.39024 * 140.91740 * 19 15 14
37 37 H 1.09006 * 109.47005 * 60.00432 * 22 20 13
38 38 H 1.09004 * 109.47081 * 179.97438 * 22 20 13
39 39 H 1.08998 * 109.47555 * 299.99986 * 22 20 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 1 1.6055 1.9816 -0.8418
5 6 3.5420 1.4443 -0.1238
6 1 4.1473 1.8887 0.6523
7 6 4.1433 0.8783 -1.2280
8 7 3.4062 0.3374 -2.1733
9 14 6.0050 0.8799 -1.3811
10 1 6.5989 1.5441 -0.1930
11 1 6.4961 -0.5192 -1.4627
12 1 6.4000 1.6156 -2.6091
13 7 1.6515 2.0992 1.2553
14 6 2.2773 1.4280 2.4231
15 6 2.2100 2.5088 3.5312
16 1 1.2207 2.5317 3.9882
17 6 3.2906 2.2692 4.5876
18 7 2.9405 1.0873 5.3867
19 6 2.4845 3.8173 2.7551
20 6 2.1281 3.4989 1.2909
21 1 3.0119 3.6062 0.6619
22 6 1.0221 4.4387 0.8069
23 1 -0.3633 0.5139 0.8899
24 1 -0.3633 0.5140 -0.8900
25 1 -0.3633 -1.0275 -0.0005
26 1 1.8933 -0.5139 -0.8901
27 1 1.8933 -0.5138 0.8899
28 1 3.8293 -0.0604 -2.9503
29 1 1.7061 0.5455 2.7114
30 1 3.3122 1.1637 2.2059
31 1 4.2492 2.1043 4.0959
32 1 3.3613 3.1402 5.2391
33 1 3.6395 0.9075 6.0918
34 1 2.0262 1.1888 5.8011
35 1 3.5359 4.0925 2.8375
36 1 1.8528 4.6219 3.1315
37 1 0.1513 4.3391 1.4550
38 1 1.3807 5.4676 0.8365
39 1 0.7460 4.1790 -0.2151
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000228078930.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:09:24
Heat of formation + Delta-G solvation = -11.104181 kcal
Electronic energy + Delta-G solvation = -17017.152332 eV
Core-core repulsion = 14572.820274 eV
Total energy + Delta-G solvation = -2444.332058 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-38.78050 -35.19371 -33.57312 -31.60348 -30.17181 -29.49115 -26.26494 -24.95738
-23.76881 -22.59664 -20.23593 -19.25682 -18.81953 -16.17740 -15.83572 -15.12788
-14.69197 -14.28314 -13.93451 -13.46291 -13.03012 -12.92568 -12.40181 -12.30957
-11.83142 -11.71801 -11.29501 -11.23274 -10.94864 -10.79609 -10.52447 -10.46892
-10.25433 -9.97914 -9.93012 -9.77833 -9.57076 -9.33785 -8.97036 -8.49209
-8.29733 -7.07526 -5.93680 -4.05900 3.28035 3.36694 3.39556 4.43202
4.68256 5.05139 5.27643 5.30488 5.43572 5.54422 5.65240 5.90381
5.97145 6.15131 6.22275 6.26316 6.41366 6.45850 6.50466 6.55744
6.62675 6.75044 6.82116 6.89483 7.06597 7.10184 7.17387 7.26235
7.28898 7.43097 7.55612 7.69588 7.82189 8.07902 8.24274 8.37285
8.53183 9.05363 9.60310 11.05441
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.020406 B = 0.010333 C = 0.009209
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1371.816501 B = 2709.168292 C = 3039.714991
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.110 4.110
3 C 0.206 3.794
4 H 0.037 0.963
5 C -0.537 4.537
6 H 0.057 0.943
7 C 0.067 3.933
8 N -0.885 5.885
9 Si 0.885 3.115
10 H -0.275 1.275
11 H -0.284 1.284
12 H -0.285 1.285
13 N -0.514 5.514
14 C 0.062 3.938
15 C -0.093 4.093
16 H 0.069 0.931
17 C 0.072 3.928
18 N -0.847 5.847
19 C -0.119 4.119
20 C 0.061 3.939
21 H 0.068 0.932
22 C -0.127 4.127
23 H 0.047 0.953
24 H 0.038 0.962
25 H 0.024 0.976
26 H 0.090 0.910
27 H 0.032 0.968
28 H 0.259 0.741
29 H 0.066 0.934
30 H 0.057 0.943
31 H 0.071 0.929
32 H 0.018 0.982
33 H 0.335 0.665
34 H 0.337 0.663
35 H 0.057 0.943
36 H 0.058 0.942
37 H 0.048 0.952
38 H 0.041 0.959
39 H 0.052 0.948
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.161 4.388 10.196 11.308
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.149 4.149
3 C 0.099 3.901
4 H 0.055 0.945
5 C -0.576 4.576
6 H 0.075 0.925
7 C -0.135 4.135
8 N -0.523 5.523
9 Si 0.713 3.287
10 H -0.200 1.200
11 H -0.210 1.210
12 H -0.211 1.211
13 N -0.238 5.238
14 C -0.066 4.066
15 C -0.112 4.112
16 H 0.087 0.913
17 C -0.059 4.059
18 N -0.375 5.375
19 C -0.157 4.157
20 C -0.048 4.048
21 H 0.086 0.914
22 C -0.185 4.185
23 H 0.066 0.934
24 H 0.057 0.943
25 H 0.043 0.957
26 H 0.109 0.891
27 H 0.051 0.949
28 H 0.070 0.930
29 H 0.084 0.916
30 H 0.076 0.924
31 H 0.090 0.910
32 H 0.036 0.964
33 H 0.147 0.853
34 H 0.149 0.851
35 H 0.075 0.925
36 H 0.077 0.923
37 H 0.067 0.933
38 H 0.060 0.940
39 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges -2.665 3.871 9.324 10.441
hybrid contribution 1.988 0.631 0.523 2.150
sum -0.677 4.503 9.847 10.849
Atomic orbital electron populations
1.21703 0.98968 0.98309 1.00496 1.21564 0.92163 0.99209 1.01927
1.19371 0.92929 0.91198 0.86575 0.94545 1.21762 0.92910 1.37715
1.05249 0.92471 1.24910 0.97637 0.95170 0.95784 1.69890 1.34568
1.38482 1.09404 0.86660 0.86487 0.77699 0.77875 1.19985 1.21041
1.21114 1.65026 1.53932 1.00500 1.04374 1.22947 0.99298 0.95433
0.88920 1.22099 0.97469 0.96191 0.95480 0.91303 1.21846 0.99310
0.89963 0.94763 1.58631 1.06872 1.41639 1.30401 1.22470 1.00304
0.96811 0.96154 1.22246 0.97117 0.91042 0.94432 0.91429 1.21689
0.98520 0.97066 1.01258 0.93414 0.94332 0.95693 0.89137 0.94923
0.93045 0.91597 0.92434 0.91031 0.96387 0.85293 0.85114 0.92465
0.92320 0.93259 0.93973 0.92876
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.90 9.80 37.16 0.36 -2.54 16
2 C -0.11 -2.68 5.14 -26.73 -0.14 -2.82 16
3 C 0.21 5.13 1.81 -68.86 -0.12 5.01 16
4 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16
5 C -0.54 -14.37 6.34 -34.44 -0.22 -14.59 16
6 H 0.06 1.54 6.03 -52.49 -0.32 1.23 16
7 C 0.07 1.84 5.29 -17.82 -0.09 1.74 16
8 N -0.88 -25.08 11.29 55.43 0.63 -24.45 16
9 Si 0.88 21.29 29.54 -169.99 -5.02 16.27 16
10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16
11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16
12 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16
13 N -0.51 -10.99 4.39 -216.03 -0.95 -11.94 16
14 C 0.06 1.24 4.65 -1.90 -0.01 1.24 16
15 C -0.09 -1.50 3.22 -88.76 -0.29 -1.79 16
16 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16
17 C 0.07 1.01 6.10 -3.82 -0.02 0.99 16
18 N -0.85 -10.72 9.54 -10.36 -0.10 -10.81 16
19 C -0.12 -1.93 6.15 -25.36 -0.16 -2.09 16
20 C 0.06 1.18 2.72 -66.63 -0.18 1.00 16
21 H 0.07 1.51 6.29 -51.93 -0.33 1.18 16
22 C -0.13 -2.21 9.32 37.15 0.35 -1.86 16
23 H 0.05 0.97 7.75 -51.93 -0.40 0.57 16
24 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16
25 H 0.02 0.47 8.14 -51.94 -0.42 0.05 16
26 H 0.09 2.45 5.95 -51.92 -0.31 2.14 16
27 H 0.03 0.79 6.76 -51.93 -0.35 0.44 16
28 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16
29 H 0.07 1.36 7.55 -51.93 -0.39 0.97 16
30 H 0.06 1.31 5.87 -51.93 -0.30 1.01 16
31 H 0.07 1.11 7.99 -51.93 -0.42 0.69 16
32 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16
33 H 0.34 3.51 9.08 -39.29 -0.36 3.15 16
34 H 0.34 3.75 8.99 -39.30 -0.35 3.40 16
35 H 0.06 0.91 7.85 -51.93 -0.41 0.50 16
36 H 0.06 0.85 7.69 -51.93 -0.40 0.45 16
37 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16
38 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16
39 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16
LS Contribution 297.88 15.07 4.49 4.49
Total: -1.00 -27.80 297.88 -8.32 -36.13
By element:
Atomic # 1 Polarization: 12.87 SS G_CDS: -6.85 Total: 6.02 kcal
Atomic # 6 Polarization: -15.18 SS G_CDS: -0.52 Total: -15.70 kcal
Atomic # 7 Polarization: -46.78 SS G_CDS: -0.42 Total: -47.20 kcal
Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal
Total LS contribution 4.49 Total: 4.49 kcal
Total: -27.80 -8.32 -36.13 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000228078930.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 25.024 kcal
(2) G-P(sol) polarization free energy of solvation -27.805 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.781 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.324 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.128 kcal
(6) G-S(sol) free energy of system = (1) + (5) -11.104 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds