Wall clock time and date at job start Mon Mar 30 2020 03:09:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53002 * 109.47469 * 2 1
4 4 H 1.09002 * 109.47070 * 305.00072 * 3 2 1
5 5 C 1.50701 * 109.47419 * 184.99997 * 3 2 1
6 6 H 1.07998 * 120.00129 * 240.00616 * 5 3 2
7 7 C 1.37880 * 119.99861 * 59.99898 * 5 3 2
8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 3
9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 3
10 10 H 1.48502 * 109.47432 * 0.02562 * 9 7 5
11 11 H 1.48506 * 109.46890 * 120.00210 * 9 7 5
12 12 H 1.48501 * 109.47062 * 240.00257 * 9 7 5
13 13 N 1.46901 * 109.46860 * 65.00222 * 3 2 1
14 14 C 1.48527 * 111.00253 * 62.60428 * 13 3 2
15 15 C 1.54935 * 103.22739 * 159.72483 * 14 13 3
16 16 H 1.08991 * 110.72958 * 80.94416 * 15 14 13
17 17 C 1.53003 * 110.72243 * 204.23191 * 15 14 13
18 18 N 1.46906 * 109.46789 * 288.49407 * 17 15 14
19 19 C 1.54594 * 102.91996 * 322.58040 * 15 14 13
20 20 C 1.47908 * 111.00080 * 180.02562 * 13 3 2
21 21 H 1.09004 * 109.91088 * 333.50249 * 20 13 3
22 22 C 1.52993 * 109.91830 * 94.79759 * 20 13 3
23 23 H 1.08997 * 109.47151 * 300.00410 * 1 2 3
24 24 H 1.09006 * 109.46918 * 59.99351 * 1 2 3
25 25 H 1.08988 * 109.47178 * 179.97438 * 1 2 3
26 26 H 1.09008 * 109.47149 * 240.00076 * 2 1 3
27 27 H 1.08997 * 109.47163 * 120.00146 * 2 1 3
28 28 H 0.97002 * 119.99768 * 179.97438 * 8 7 5
29 29 H 1.09005 * 110.66854 * 278.15421 * 14 13 3
30 30 H 1.08999 * 110.66773 * 41.28234 * 14 13 3
31 31 H 1.08998 * 109.47599 * 48.49128 * 17 15 14
32 32 H 1.08998 * 109.47352 * 168.50145 * 17 15 14
33 33 H 1.00899 * 110.99842 * 179.97438 * 18 17 15
34 34 H 1.00894 * 111.00175 * 303.95974 * 18 17 15
35 35 H 1.08995 * 110.31208 * 263.04423 * 19 15 14
36 36 H 1.09004 * 110.39024 * 140.91740 * 19 15 14
37 37 H 1.09006 * 109.47005 * 60.00432 * 22 20 13
38 38 H 1.09004 * 109.47081 * 179.97438 * 22 20 13
39 39 H 1.08998 * 109.47555 * 299.99986 * 22 20 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 1 1.6055 1.9816 -0.8418
5 6 3.5420 1.4443 -0.1238
6 1 4.1473 1.8887 0.6523
7 6 4.1433 0.8783 -1.2280
8 7 3.4062 0.3374 -2.1733
9 14 6.0050 0.8799 -1.3811
10 1 6.5989 1.5441 -0.1930
11 1 6.4961 -0.5192 -1.4627
12 1 6.4000 1.6156 -2.6091
13 7 1.6515 2.0992 1.2553
14 6 2.2773 1.4280 2.4231
15 6 2.2100 2.5088 3.5312
16 1 1.2207 2.5317 3.9882
17 6 3.2906 2.2692 4.5876
18 7 2.9405 1.0873 5.3867
19 6 2.4845 3.8173 2.7551
20 6 2.1281 3.4989 1.2909
21 1 3.0119 3.6062 0.6619
22 6 1.0221 4.4387 0.8069
23 1 -0.3633 0.5139 0.8899
24 1 -0.3633 0.5140 -0.8900
25 1 -0.3633 -1.0275 -0.0005
26 1 1.8933 -0.5139 -0.8901
27 1 1.8933 -0.5138 0.8899
28 1 3.8293 -0.0604 -2.9503
29 1 1.7061 0.5455 2.7114
30 1 3.3122 1.1637 2.2059
31 1 4.2492 2.1043 4.0959
32 1 3.3613 3.1402 5.2391
33 1 3.6395 0.9075 6.0918
34 1 2.0262 1.1888 5.8011
35 1 3.5359 4.0925 2.8375
36 1 1.8528 4.6219 3.1315
37 1 0.1513 4.3391 1.4550
38 1 1.3807 5.4676 0.8365
39 1 0.7460 4.1790 -0.2151
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000228078930.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:09:24
Heat of formation + Delta-G solvation = -30.305275 kcal
Electronic energy + Delta-G solvation = -17017.984954 eV
Core-core repulsion = 14572.820274 eV
Total energy + Delta-G solvation = -2445.164680 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-40.37005 -36.73338 -35.10501 -33.59679 -31.56270 -31.12463 -28.19782 -26.33254
-25.40517 -24.31439 -21.77821 -20.84520 -20.58769 -18.21159 -17.25934 -16.68205
-16.22487 -15.72045 -15.29666 -15.03203 -14.82537 -14.62295 -14.03897 -13.84984
-13.56996 -13.17022 -13.04397 -12.85027 -12.70638 -12.48458 -12.30076 -12.06497
-11.89753 -11.67265 -11.55047 -11.41106 -11.28309 -11.18824 -10.90217 -10.41080
-9.47894 -8.91892 -8.01725 -6.22679 1.34257 1.37081 1.46552 2.39806
3.16113 3.49377 3.65967 3.93235 4.06687 4.25717 4.39175 4.59276
4.60711 4.69906 4.74243 4.80109 4.84622 4.90033 4.91779 5.04332
5.08816 5.17564 5.23334 5.25455 5.39508 5.41415 5.51307 5.54153
5.62960 5.66009 5.81977 6.08550 6.23737 6.32127 6.45949 6.63421
6.71956 7.00420 7.46510 8.93615
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.020406 B = 0.010333 C = 0.009209
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1371.816501 B = 2709.168292 C = 3039.714991
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.125 4.125
2 C -0.105 4.105
3 C 0.215 3.785
4 H 0.000 1.000
5 C -0.541 4.541
6 H 0.049 0.951
7 C 0.018 3.982
8 N -0.912 5.912
9 Si 0.944 3.056
10 H -0.272 1.272
11 H -0.281 1.281
12 H -0.281 1.281
13 N -0.513 5.513
14 C 0.065 3.935
15 C -0.081 4.081
16 H 0.083 0.917
17 C 0.079 3.921
18 N -0.858 5.858
19 C -0.111 4.111
20 C 0.052 3.948
21 H 0.031 0.969
22 C -0.120 4.120
23 H 0.056 0.944
24 H 0.032 0.968
25 H 0.045 0.955
26 H 0.060 0.940
27 H 0.027 0.973
28 H 0.260 0.740
29 H 0.058 0.942
30 H 0.025 0.975
31 H 0.052 0.948
32 H 0.045 0.955
33 H 0.349 0.651
34 H 0.348 0.652
35 H 0.060 0.940
36 H 0.088 0.912
37 H 0.063 0.937
38 H 0.067 0.933
39 H 0.029 0.971
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.339 5.329 12.206 13.522
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.182 4.182
2 C -0.143 4.143
3 C 0.107 3.893
4 H 0.017 0.983
5 C -0.580 4.580
6 H 0.068 0.932
7 C -0.181 4.181
8 N -0.552 5.552
9 Si 0.771 3.229
10 H -0.196 1.196
11 H -0.207 1.207
12 H -0.207 1.207
13 N -0.236 5.236
14 C -0.063 4.063
15 C -0.101 4.101
16 H 0.102 0.898
17 C -0.052 4.052
18 N -0.390 5.390
19 C -0.149 4.149
20 C -0.057 4.057
21 H 0.049 0.951
22 C -0.178 4.178
23 H 0.075 0.925
24 H 0.051 0.949
25 H 0.064 0.936
26 H 0.079 0.921
27 H 0.045 0.955
28 H 0.069 0.931
29 H 0.076 0.924
30 H 0.043 0.957
31 H 0.070 0.930
32 H 0.063 0.937
33 H 0.162 0.838
34 H 0.161 0.839
35 H 0.079 0.921
36 H 0.106 0.894
37 H 0.082 0.918
38 H 0.086 0.914
39 H 0.048 0.952
Dipole moment (debyes) X Y Z Total
from point charges -2.843 4.818 11.356 12.659
hybrid contribution 2.022 0.339 -0.095 2.053
sum -0.821 5.157 11.261 12.412
Atomic orbital electron populations
1.21555 0.96319 0.99724 1.00590 1.21407 0.94494 0.98385 1.00050
1.19095 0.91715 0.91314 0.87185 0.98255 1.21962 0.94038 1.37111
1.04927 0.93242 1.25618 1.01676 0.95149 0.95683 1.70015 1.36071
1.39249 1.09825 0.85719 0.81693 0.77668 0.77842 1.19626 1.20737
1.20691 1.64980 1.53850 1.01542 1.03247 1.22859 0.96879 0.96603
0.89927 1.22041 0.99136 0.94196 0.94701 0.89845 1.21680 0.97376
0.91540 0.94605 1.58554 1.08060 1.41155 1.31197 1.22429 1.01219
0.97743 0.93533 1.22355 0.96546 0.90340 0.96452 0.95071 1.21628
0.98279 0.97850 0.99996 0.92514 0.94894 0.93614 0.92144 0.95471
0.93056 0.92402 0.95682 0.92966 0.93739 0.83773 0.83899 0.92084
0.89350 0.91793 0.91373 0.95206
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -5.23 9.80 71.98 0.71 -4.52 16
2 C -0.10 -5.23 5.14 30.59 0.16 -5.07 16
3 C 0.21 11.04 1.81 44.17 0.08 11.12 16
4 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16
5 C -0.54 -29.89 6.34 25.60 0.16 -29.72 16
6 H 0.05 2.76 6.03 -2.91 -0.02 2.74 16
7 C 0.02 1.02 5.29 84.66 0.45 1.46 16
8 N -0.91 -53.26 11.29 21.45 0.24 -53.02 16
9 Si 0.94 44.53 29.54 68.60 2.03 46.56 16
10 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16
11 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16
12 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16
13 N -0.51 -22.00 4.39 -837.38 -3.67 -25.67 16
14 C 0.07 2.61 4.65 86.65 0.40 3.01 16
15 C -0.08 -2.43 3.22 -9.59 -0.03 -2.46 16
16 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16
17 C 0.08 2.02 6.10 86.30 0.53 2.55 16
18 N -0.86 -19.62 9.54 -186.70 -1.78 -21.40 16
19 C -0.11 -3.33 6.15 31.48 0.19 -3.13 16
20 C 0.05 2.01 2.72 45.06 0.12 2.13 16
21 H 0.03 1.42 6.29 -2.38 -0.01 1.41 16
22 C -0.12 -3.98 9.32 71.98 0.67 -3.31 16
23 H 0.06 2.26 7.75 -2.39 -0.02 2.24 16
24 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16
25 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16
26 H 0.06 3.39 5.95 -2.38 -0.01 3.37 16
27 H 0.03 1.34 6.76 -2.39 -0.02 1.32 16
28 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16
29 H 0.06 2.37 7.55 -2.38 -0.02 2.35 16
30 H 0.02 1.16 5.87 -2.39 -0.01 1.15 16
31 H 0.05 1.54 7.99 -2.39 -0.02 1.52 16
32 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16
33 H 0.35 6.43 9.08 -89.69 -0.81 5.61 16
34 H 0.35 6.70 8.99 -89.70 -0.81 5.89 16
35 H 0.06 1.80 7.85 -2.39 -0.02 1.78 16
36 H 0.09 2.18 7.69 -2.38 -0.02 2.16 16
37 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16
38 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16
39 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16
Total: -1.00 -61.33 297.88 -0.34 -61.68
By element:
Atomic # 1 Polarization: 20.40 SS G_CDS: -0.60 Total: 19.80 kcal
Atomic # 6 Polarization: -31.39 SS G_CDS: 3.44 Total: -27.95 kcal
Atomic # 7 Polarization: -94.87 SS G_CDS: -5.21 Total: -100.09 kcal
Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal
Total: -61.33 -0.34 -61.68 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000228078930.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 31.372 kcal
(2) G-P(sol) polarization free energy of solvation -61.334 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.962 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.343 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.677 kcal
(6) G-S(sol) free energy of system = (1) + (5) -30.305 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds