Wall clock time and date at job start Mon Mar 30 2020 03:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47469 * 2 1 4 4 H 1.09002 * 109.47070 * 305.00072 * 3 2 1 5 5 C 1.50701 * 109.47419 * 184.99997 * 3 2 1 6 6 H 1.07998 * 120.00129 * 240.00616 * 5 3 2 7 7 C 1.37880 * 119.99861 * 59.99898 * 5 3 2 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47432 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46890 * 120.00210 * 9 7 5 12 12 H 1.48501 * 109.47062 * 240.00257 * 9 7 5 13 13 N 1.46901 * 109.46860 * 65.00222 * 3 2 1 14 14 C 1.48527 * 111.00253 * 62.60428 * 13 3 2 15 15 C 1.54935 * 103.22739 * 159.72483 * 14 13 3 16 16 H 1.08991 * 110.72958 * 80.94416 * 15 14 13 17 17 C 1.53003 * 110.72243 * 204.23191 * 15 14 13 18 18 N 1.46906 * 109.46789 * 288.49407 * 17 15 14 19 19 C 1.54594 * 102.91996 * 322.58040 * 15 14 13 20 20 C 1.47908 * 111.00080 * 180.02562 * 13 3 2 21 21 H 1.09004 * 109.91088 * 333.50249 * 20 13 3 22 22 C 1.52993 * 109.91830 * 94.79759 * 20 13 3 23 23 H 1.08997 * 109.47151 * 300.00410 * 1 2 3 24 24 H 1.09006 * 109.46918 * 59.99351 * 1 2 3 25 25 H 1.08988 * 109.47178 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.47149 * 240.00076 * 2 1 3 27 27 H 1.08997 * 109.47163 * 120.00146 * 2 1 3 28 28 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 29 29 H 1.09005 * 110.66854 * 278.15421 * 14 13 3 30 30 H 1.08999 * 110.66773 * 41.28234 * 14 13 3 31 31 H 1.08998 * 109.47599 * 48.49128 * 17 15 14 32 32 H 1.08998 * 109.47352 * 168.50145 * 17 15 14 33 33 H 1.00899 * 110.99842 * 179.97438 * 18 17 15 34 34 H 1.00894 * 111.00175 * 303.95974 * 18 17 15 35 35 H 1.08995 * 110.31208 * 263.04423 * 19 15 14 36 36 H 1.09004 * 110.39024 * 140.91740 * 19 15 14 37 37 H 1.09006 * 109.47005 * 60.00432 * 22 20 13 38 38 H 1.09004 * 109.47081 * 179.97438 * 22 20 13 39 39 H 1.08998 * 109.47555 * 299.99986 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9816 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0050 0.8799 -1.3811 10 1 6.5989 1.5441 -0.1930 11 1 6.4961 -0.5192 -1.4627 12 1 6.4000 1.6156 -2.6091 13 7 1.6515 2.0992 1.2553 14 6 2.2773 1.4280 2.4231 15 6 2.2100 2.5088 3.5312 16 1 1.2207 2.5317 3.9882 17 6 3.2906 2.2692 4.5876 18 7 2.9405 1.0873 5.3867 19 6 2.4845 3.8173 2.7551 20 6 2.1281 3.4989 1.2909 21 1 3.0119 3.6062 0.6619 22 6 1.0221 4.4387 0.8069 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5140 -0.8900 25 1 -0.3633 -1.0275 -0.0005 26 1 1.8933 -0.5139 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 3.8293 -0.0604 -2.9503 29 1 1.7061 0.5455 2.7114 30 1 3.3122 1.1637 2.2059 31 1 4.2492 2.1043 4.0959 32 1 3.3613 3.1402 5.2391 33 1 3.6395 0.9075 6.0918 34 1 2.0262 1.1888 5.8011 35 1 3.5359 4.0925 2.8375 36 1 1.8528 4.6219 3.1315 37 1 0.1513 4.3391 1.4550 38 1 1.3807 5.4676 0.8365 39 1 0.7460 4.1790 -0.2151 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000228078930.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:24 Heat of formation + Delta-G solvation = -30.305275 kcal Electronic energy + Delta-G solvation = -17017.984954 eV Core-core repulsion = 14572.820274 eV Total energy + Delta-G solvation = -2445.164680 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.37005 -36.73338 -35.10501 -33.59679 -31.56270 -31.12463 -28.19782 -26.33254 -25.40517 -24.31439 -21.77821 -20.84520 -20.58769 -18.21159 -17.25934 -16.68205 -16.22487 -15.72045 -15.29666 -15.03203 -14.82537 -14.62295 -14.03897 -13.84984 -13.56996 -13.17022 -13.04397 -12.85027 -12.70638 -12.48458 -12.30076 -12.06497 -11.89753 -11.67265 -11.55047 -11.41106 -11.28309 -11.18824 -10.90217 -10.41080 -9.47894 -8.91892 -8.01725 -6.22679 1.34257 1.37081 1.46552 2.39806 3.16113 3.49377 3.65967 3.93235 4.06687 4.25717 4.39175 4.59276 4.60711 4.69906 4.74243 4.80109 4.84622 4.90033 4.91779 5.04332 5.08816 5.17564 5.23334 5.25455 5.39508 5.41415 5.51307 5.54153 5.62960 5.66009 5.81977 6.08550 6.23737 6.32127 6.45949 6.63421 6.71956 7.00420 7.46510 8.93615 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.020406 B = 0.010333 C = 0.009209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.816501 B = 2709.168292 C = 3039.714991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.105 4.105 3 C 0.215 3.785 4 H 0.000 1.000 5 C -0.541 4.541 6 H 0.049 0.951 7 C 0.018 3.982 8 N -0.912 5.912 9 Si 0.944 3.056 10 H -0.272 1.272 11 H -0.281 1.281 12 H -0.281 1.281 13 N -0.513 5.513 14 C 0.065 3.935 15 C -0.081 4.081 16 H 0.083 0.917 17 C 0.079 3.921 18 N -0.858 5.858 19 C -0.111 4.111 20 C 0.052 3.948 21 H 0.031 0.969 22 C -0.120 4.120 23 H 0.056 0.944 24 H 0.032 0.968 25 H 0.045 0.955 26 H 0.060 0.940 27 H 0.027 0.973 28 H 0.260 0.740 29 H 0.058 0.942 30 H 0.025 0.975 31 H 0.052 0.948 32 H 0.045 0.955 33 H 0.349 0.651 34 H 0.348 0.652 35 H 0.060 0.940 36 H 0.088 0.912 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.339 5.329 12.206 13.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.143 4.143 3 C 0.107 3.893 4 H 0.017 0.983 5 C -0.580 4.580 6 H 0.068 0.932 7 C -0.181 4.181 8 N -0.552 5.552 9 Si 0.771 3.229 10 H -0.196 1.196 11 H -0.207 1.207 12 H -0.207 1.207 13 N -0.236 5.236 14 C -0.063 4.063 15 C -0.101 4.101 16 H 0.102 0.898 17 C -0.052 4.052 18 N -0.390 5.390 19 C -0.149 4.149 20 C -0.057 4.057 21 H 0.049 0.951 22 C -0.178 4.178 23 H 0.075 0.925 24 H 0.051 0.949 25 H 0.064 0.936 26 H 0.079 0.921 27 H 0.045 0.955 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.043 0.957 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.162 0.838 34 H 0.161 0.839 35 H 0.079 0.921 36 H 0.106 0.894 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -2.843 4.818 11.356 12.659 hybrid contribution 2.022 0.339 -0.095 2.053 sum -0.821 5.157 11.261 12.412 Atomic orbital electron populations 1.21555 0.96319 0.99724 1.00590 1.21407 0.94494 0.98385 1.00050 1.19095 0.91715 0.91314 0.87185 0.98255 1.21962 0.94038 1.37111 1.04927 0.93242 1.25618 1.01676 0.95149 0.95683 1.70015 1.36071 1.39249 1.09825 0.85719 0.81693 0.77668 0.77842 1.19626 1.20737 1.20691 1.64980 1.53850 1.01542 1.03247 1.22859 0.96879 0.96603 0.89927 1.22041 0.99136 0.94196 0.94701 0.89845 1.21680 0.97376 0.91540 0.94605 1.58554 1.08060 1.41155 1.31197 1.22429 1.01219 0.97743 0.93533 1.22355 0.96546 0.90340 0.96452 0.95071 1.21628 0.98279 0.97850 0.99996 0.92514 0.94894 0.93614 0.92144 0.95471 0.93056 0.92402 0.95682 0.92966 0.93739 0.83773 0.83899 0.92084 0.89350 0.91793 0.91373 0.95206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.23 9.80 71.98 0.71 -4.52 16 2 C -0.10 -5.23 5.14 30.59 0.16 -5.07 16 3 C 0.21 11.04 1.81 44.17 0.08 11.12 16 4 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 5 C -0.54 -29.89 6.34 25.60 0.16 -29.72 16 6 H 0.05 2.76 6.03 -2.91 -0.02 2.74 16 7 C 0.02 1.02 5.29 84.66 0.45 1.46 16 8 N -0.91 -53.26 11.29 21.45 0.24 -53.02 16 9 Si 0.94 44.53 29.54 68.60 2.03 46.56 16 10 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 13 N -0.51 -22.00 4.39 -837.38 -3.67 -25.67 16 14 C 0.07 2.61 4.65 86.65 0.40 3.01 16 15 C -0.08 -2.43 3.22 -9.59 -0.03 -2.46 16 16 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 17 C 0.08 2.02 6.10 86.30 0.53 2.55 16 18 N -0.86 -19.62 9.54 -186.70 -1.78 -21.40 16 19 C -0.11 -3.33 6.15 31.48 0.19 -3.13 16 20 C 0.05 2.01 2.72 45.06 0.12 2.13 16 21 H 0.03 1.42 6.29 -2.38 -0.01 1.41 16 22 C -0.12 -3.98 9.32 71.98 0.67 -3.31 16 23 H 0.06 2.26 7.75 -2.39 -0.02 2.24 16 24 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 25 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.06 3.39 5.95 -2.38 -0.01 3.37 16 27 H 0.03 1.34 6.76 -2.39 -0.02 1.32 16 28 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 29 H 0.06 2.37 7.55 -2.38 -0.02 2.35 16 30 H 0.02 1.16 5.87 -2.39 -0.01 1.15 16 31 H 0.05 1.54 7.99 -2.39 -0.02 1.52 16 32 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.35 6.43 9.08 -89.69 -0.81 5.61 16 34 H 0.35 6.70 8.99 -89.70 -0.81 5.89 16 35 H 0.06 1.80 7.85 -2.39 -0.02 1.78 16 36 H 0.09 2.18 7.69 -2.38 -0.02 2.16 16 37 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 38 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 39 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -61.33 297.88 -0.34 -61.68 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: -0.60 Total: 19.80 kcal Atomic # 6 Polarization: -31.39 SS G_CDS: 3.44 Total: -27.95 kcal Atomic # 7 Polarization: -94.87 SS G_CDS: -5.21 Total: -100.09 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -61.33 -0.34 -61.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228078930.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.372 kcal (2) G-P(sol) polarization free energy of solvation -61.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds