Wall clock time and date at job start Mon Mar 30 2020 03:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47253 * 2 1 4 4 H 1.09005 * 109.47175 * 183.89095 * 3 2 1 5 5 C 1.50706 * 109.47047 * 303.88469 * 3 2 1 6 6 H 1.07995 * 119.99498 * 115.39307 * 5 3 2 7 7 C 1.37874 * 120.00157 * 295.39868 * 5 3 2 8 8 N 1.31514 * 119.99832 * 354.13930 * 7 5 3 9 9 Si 1.86803 * 119.99879 * 174.14114 * 7 5 3 10 10 H 1.48498 * 109.47071 * 269.99989 * 9 7 5 11 11 H 1.48503 * 109.47071 * 29.99652 * 9 7 5 12 12 H 1.48505 * 109.47056 * 149.99743 * 9 7 5 13 13 N 1.46891 * 109.47385 * 63.88790 * 3 2 1 14 14 C 1.46904 * 111.00230 * 80.81855 * 13 3 2 15 15 C 1.52995 * 109.47472 * 184.73192 * 14 13 3 16 16 H 1.08996 * 109.46416 * 295.00078 * 15 14 13 17 17 C 1.53034 * 109.46235 * 175.02026 * 15 14 13 18 18 C 1.53121 * 109.28001 * 180.79448 * 17 15 14 19 19 C 1.53120 * 109.14920 * 57.67026 * 18 17 15 20 20 C 1.53038 * 109.28317 * 302.34067 * 19 18 17 21 21 N 1.46846 * 109.51845 * 59.17683 * 20 19 18 22 22 H 1.09004 * 109.46832 * 64.87117 * 1 2 3 23 23 H 1.08999 * 109.47312 * 184.86139 * 1 2 3 24 24 H 1.08996 * 109.47331 * 304.86823 * 1 2 3 25 25 H 1.09003 * 109.47264 * 239.99544 * 2 1 3 26 26 H 1.09005 * 109.46972 * 119.99619 * 2 1 3 27 27 H 0.96997 * 120.00308 * 354.17980 * 8 7 5 28 28 H 1.00903 * 111.00474 * 316.86778 * 13 3 2 29 29 H 1.09002 * 109.47111 * 304.73856 * 14 13 3 30 30 H 1.09004 * 109.46941 * 64.73028 * 14 13 3 31 31 H 1.09001 * 109.50402 * 300.74636 * 17 15 14 32 32 H 1.09003 * 109.50726 * 60.86735 * 17 15 14 33 33 H 1.08998 * 109.53074 * 297.76782 * 18 17 15 34 34 H 1.09001 * 109.57803 * 177.59678 * 18 17 15 35 35 H 1.08996 * 109.50563 * 182.40045 * 19 18 17 36 36 H 1.09004 * 109.50432 * 62.28495 * 19 18 17 37 37 H 1.08999 * 109.46153 * 299.16756 * 20 19 18 38 38 H 1.08997 * 109.46545 * 179.19401 * 20 19 18 39 39 H 1.00906 * 111.00326 * 62.36318 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1278 1.4432 -0.0697 5 6 1.4606 2.1801 -1.1796 6 1 0.7880 3.0099 -1.0201 7 6 1.7890 1.7956 -2.4622 8 7 2.6950 0.8624 -2.6572 9 14 0.9473 2.6001 -3.9229 10 1 -0.2761 1.8344 -4.2727 11 1 0.5753 3.9947 -3.5735 12 1 1.8734 2.6108 -5.0837 13 7 1.6286 2.1073 1.2435 14 6 2.5282 1.7566 2.3506 15 6 2.0021 2.3705 3.6495 16 1 2.0413 3.4575 3.5794 17 6 2.8682 1.9037 4.8216 18 6 2.3261 2.5045 6.1215 19 6 0.8642 2.0846 6.2977 20 6 0.0560 2.5460 5.0828 21 7 0.6136 1.9439 3.8651 22 1 -0.3633 0.4364 -0.9304 23 1 -0.3634 -1.0239 0.0871 24 1 -0.3634 0.5875 0.8431 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8901 27 1 3.1924 0.5046 -1.9053 28 1 0.6709 1.8864 1.4721 29 1 2.5727 0.6723 2.4531 30 1 3.5263 2.1432 2.1442 31 1 2.8403 0.8158 4.8840 32 1 3.8957 2.2338 4.6691 33 1 2.3898 3.5916 6.0748 34 1 2.9136 2.1410 6.9647 35 1 0.4597 2.5440 7.1996 36 1 0.8050 0.9996 6.3834 37 1 0.1043 3.6322 5.0057 38 1 -0.9826 2.2361 5.1985 39 1 0.5450 0.9376 3.8951 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233869714.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:06 Heat of formation + Delta-G solvation = -22.366384 kcal Electronic energy + Delta-G solvation = -16479.750305 eV Core-core repulsion = 14034.929881 eV Total energy + Delta-G solvation = -2444.820424 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.02100 -36.48110 -33.17872 -31.62372 -31.27426 -29.70499 -26.24838 -24.39891 -23.51459 -22.99506 -21.05889 -20.33977 -19.33686 -16.70626 -15.61817 -15.29719 -14.82106 -14.44549 -14.12343 -13.72569 -13.48043 -13.32804 -12.87821 -12.56555 -12.32285 -11.97440 -11.60306 -11.47108 -11.16119 -11.08650 -10.91564 -10.70622 -10.61724 -10.40631 -10.06187 -10.00704 -9.93534 -9.69029 -8.49750 -8.23065 -8.13171 -7.09913 -6.20158 -3.88668 3.51304 3.55051 3.70965 4.33054 4.60835 4.68235 4.77856 4.92506 5.03279 5.36536 5.37727 5.49061 5.51969 5.65775 5.71659 5.80298 5.91238 5.92510 5.97856 6.06030 6.12885 6.20447 6.25883 6.31418 6.45086 6.46930 6.80736 7.11288 7.16366 7.21984 7.37519 7.41746 7.52354 8.09495 8.42294 8.73370 8.79228 9.04373 9.79348 11.15531 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.046097 B = 0.005937 C = 0.005882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.274802 B = 4715.245887 C = 4758.858196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.150 4.150 3 C 0.202 3.798 4 H 0.021 0.979 5 C -0.565 4.565 6 H 0.054 0.946 7 C 0.016 3.984 8 N -0.920 5.920 9 Si 1.067 2.933 10 H -0.290 1.290 11 H -0.289 1.289 12 H -0.288 1.288 13 N -0.672 5.672 14 C 0.066 3.934 15 C 0.091 3.909 16 H 0.085 0.915 17 C -0.152 4.152 18 C -0.118 4.118 19 C -0.158 4.158 20 C 0.060 3.940 21 N -0.675 5.675 22 H 0.065 0.935 23 H 0.023 0.977 24 H 0.040 0.960 25 H 0.066 0.934 26 H 0.017 0.983 27 H 0.268 0.732 28 H 0.342 0.658 29 H 0.014 0.986 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.600 0.750 15.680 15.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.190 4.190 3 C 0.093 3.907 4 H 0.039 0.961 5 C -0.604 4.604 6 H 0.073 0.927 7 C -0.186 4.186 8 N -0.558 5.558 9 Si 0.896 3.104 10 H -0.217 1.217 11 H -0.215 1.215 12 H -0.214 1.214 13 N -0.304 5.304 14 C -0.065 4.065 15 C -0.020 4.020 16 H 0.103 0.897 17 C -0.192 4.192 18 C -0.155 4.155 19 C -0.198 4.198 20 C -0.070 4.070 21 N -0.303 5.303 22 H 0.084 0.916 23 H 0.042 0.958 24 H 0.059 0.941 25 H 0.084 0.916 26 H 0.036 0.964 27 H 0.079 0.921 28 H 0.163 0.837 29 H 0.032 0.968 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.674 1.799 13.436 13.817 hybrid contribution 0.457 -1.529 2.667 3.108 sum -2.217 0.270 16.103 16.257 Atomic orbital electron populations 1.21537 0.96786 0.98081 1.02089 1.22196 0.96141 1.01540 0.99137 1.19308 0.95075 0.88362 0.87916 0.96133 1.21888 1.30066 1.17420 0.91056 0.92722 1.25682 0.96771 0.96051 1.00144 1.70756 1.22664 1.27038 1.35306 0.83580 0.75739 0.75521 0.75558 1.21667 1.21522 1.21378 1.60698 1.05956 1.61952 1.01829 1.21929 0.97581 0.96204 0.90761 1.21669 0.86338 1.00821 0.93146 0.89656 1.22273 1.00558 1.00574 0.95815 1.21536 0.95801 1.00781 0.97410 1.22284 0.96496 1.01077 0.99905 1.21984 0.97729 1.00154 0.87168 1.60543 1.19516 1.13529 1.36755 0.91568 0.95760 0.94070 0.91587 0.96420 0.92114 0.83681 0.96845 0.91845 0.92276 0.91429 0.91906 0.92402 0.91842 0.92296 0.90965 0.91009 0.84727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 9.38 37.16 0.35 -2.39 16 2 C -0.15 -3.52 5.46 -26.74 -0.15 -3.67 16 3 C 0.20 5.10 1.95 -68.87 -0.13 4.96 16 4 H 0.02 0.57 7.31 -51.93 -0.38 0.19 16 5 C -0.57 -15.87 7.43 -34.44 -0.26 -16.13 16 6 H 0.05 1.58 7.82 -52.49 -0.41 1.17 16 7 C 0.02 0.46 5.27 -17.82 -0.09 0.37 16 8 N -0.92 -27.60 12.88 55.43 0.71 -26.88 16 9 Si 1.07 25.62 29.91 -169.99 -5.08 20.54 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 N -0.67 -14.64 6.25 -107.95 -0.67 -15.32 16 14 C 0.07 1.19 5.20 -3.82 -0.02 1.17 16 15 C 0.09 1.31 2.73 -67.73 -0.18 1.13 16 16 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 17 C -0.15 -1.82 5.36 -26.65 -0.14 -1.96 16 18 C -0.12 -1.21 6.00 -26.61 -0.16 -1.37 16 19 C -0.16 -1.54 6.08 -26.65 -0.16 -1.70 16 20 C 0.06 0.67 6.55 -3.83 -0.03 0.64 16 21 N -0.67 -9.25 5.49 -106.77 -0.59 -9.83 16 22 H 0.07 1.56 7.30 -51.93 -0.38 1.18 16 23 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.04 0.82 6.24 -51.93 -0.32 0.50 16 25 H 0.07 1.71 6.27 -51.93 -0.33 1.39 16 26 H 0.02 0.37 7.04 -51.93 -0.37 0.01 16 27 H 0.27 8.02 6.04 -40.82 -0.25 7.77 16 28 H 0.34 7.28 5.51 -39.29 -0.22 7.07 16 29 H 0.01 0.25 7.00 -51.93 -0.36 -0.12 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.34 4.47 8.79 -39.29 -0.35 4.12 16 LS Contribution 296.15 15.07 4.46 4.46 Total: -1.00 -29.19 296.15 -8.95 -38.14 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -6.80 Total: 7.85 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: -0.98 Total: -18.95 kcal Atomic # 7 Polarization: -51.48 SS G_CDS: -0.55 Total: -52.03 kcal Atomic # 14 Polarization: 25.62 SS G_CDS: -5.08 Total: 20.54 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -29.19 -8.95 -38.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233869714.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.769 kcal (2) G-P(sol) polarization free energy of solvation -29.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds