Wall clock time and date at job start Mon Mar 30 2020 03:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47253 * 2 1 4 4 H 1.09005 * 109.47175 * 183.89095 * 3 2 1 5 5 C 1.50706 * 109.47047 * 303.88469 * 3 2 1 6 6 H 1.07995 * 119.99498 * 115.39307 * 5 3 2 7 7 C 1.37874 * 120.00157 * 295.39868 * 5 3 2 8 8 N 1.31514 * 119.99832 * 354.13930 * 7 5 3 9 9 Si 1.86803 * 119.99879 * 174.14114 * 7 5 3 10 10 H 1.48498 * 109.47071 * 269.99989 * 9 7 5 11 11 H 1.48503 * 109.47071 * 29.99652 * 9 7 5 12 12 H 1.48505 * 109.47056 * 149.99743 * 9 7 5 13 13 N 1.46891 * 109.47385 * 63.88790 * 3 2 1 14 14 C 1.46904 * 111.00230 * 80.81855 * 13 3 2 15 15 C 1.52995 * 109.47472 * 184.73192 * 14 13 3 16 16 H 1.08996 * 109.46416 * 295.00078 * 15 14 13 17 17 C 1.53034 * 109.46235 * 175.02026 * 15 14 13 18 18 C 1.53121 * 109.28001 * 180.79448 * 17 15 14 19 19 C 1.53120 * 109.14920 * 57.67026 * 18 17 15 20 20 C 1.53038 * 109.28317 * 302.34067 * 19 18 17 21 21 N 1.46846 * 109.51845 * 59.17683 * 20 19 18 22 22 H 1.09004 * 109.46832 * 64.87117 * 1 2 3 23 23 H 1.08999 * 109.47312 * 184.86139 * 1 2 3 24 24 H 1.08996 * 109.47331 * 304.86823 * 1 2 3 25 25 H 1.09003 * 109.47264 * 239.99544 * 2 1 3 26 26 H 1.09005 * 109.46972 * 119.99619 * 2 1 3 27 27 H 0.96997 * 120.00308 * 354.17980 * 8 7 5 28 28 H 1.00903 * 111.00474 * 316.86778 * 13 3 2 29 29 H 1.09002 * 109.47111 * 304.73856 * 14 13 3 30 30 H 1.09004 * 109.46941 * 64.73028 * 14 13 3 31 31 H 1.09001 * 109.50402 * 300.74636 * 17 15 14 32 32 H 1.09003 * 109.50726 * 60.86735 * 17 15 14 33 33 H 1.08998 * 109.53074 * 297.76782 * 18 17 15 34 34 H 1.09001 * 109.57803 * 177.59678 * 18 17 15 35 35 H 1.08996 * 109.50563 * 182.40045 * 19 18 17 36 36 H 1.09004 * 109.50432 * 62.28495 * 19 18 17 37 37 H 1.08999 * 109.46153 * 299.16756 * 20 19 18 38 38 H 1.08997 * 109.46545 * 179.19401 * 20 19 18 39 39 H 1.00906 * 111.00326 * 62.36318 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1278 1.4432 -0.0697 5 6 1.4606 2.1801 -1.1796 6 1 0.7880 3.0099 -1.0201 7 6 1.7890 1.7956 -2.4622 8 7 2.6950 0.8624 -2.6572 9 14 0.9473 2.6001 -3.9229 10 1 -0.2761 1.8344 -4.2727 11 1 0.5753 3.9947 -3.5735 12 1 1.8734 2.6108 -5.0837 13 7 1.6286 2.1073 1.2435 14 6 2.5282 1.7566 2.3506 15 6 2.0021 2.3705 3.6495 16 1 2.0413 3.4575 3.5794 17 6 2.8682 1.9037 4.8216 18 6 2.3261 2.5045 6.1215 19 6 0.8642 2.0846 6.2977 20 6 0.0560 2.5460 5.0828 21 7 0.6136 1.9439 3.8651 22 1 -0.3633 0.4364 -0.9304 23 1 -0.3634 -1.0239 0.0871 24 1 -0.3634 0.5875 0.8431 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8901 27 1 3.1924 0.5046 -1.9053 28 1 0.6709 1.8864 1.4721 29 1 2.5727 0.6723 2.4531 30 1 3.5263 2.1432 2.1442 31 1 2.8403 0.8158 4.8840 32 1 3.8957 2.2338 4.6691 33 1 2.3898 3.5916 6.0748 34 1 2.9136 2.1410 6.9647 35 1 0.4597 2.5440 7.1996 36 1 0.8050 0.9996 6.3834 37 1 0.1043 3.6322 5.0057 38 1 -0.9826 2.2361 5.1985 39 1 0.5450 0.9376 3.8951 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233869714.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:06 Heat of formation + Delta-G solvation = -42.010763 kcal Electronic energy + Delta-G solvation = -16480.602149 eV Core-core repulsion = 14034.929881 eV Total energy + Delta-G solvation = -2445.672268 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.12579 -38.26042 -34.85876 -33.05977 -32.55216 -31.19744 -28.02760 -25.98159 -25.37721 -24.05427 -22.30369 -21.34524 -21.23139 -18.74239 -16.99826 -16.47331 -16.06674 -15.70537 -15.60425 -15.34807 -15.03245 -14.91776 -14.27227 -13.98800 -13.87996 -13.16104 -13.09593 -12.99117 -12.68042 -12.60336 -12.21585 -12.11944 -11.95283 -11.89421 -11.81387 -11.62812 -11.54006 -11.29590 -10.56294 -10.37389 -9.21183 -8.88339 -8.47434 -6.17072 1.56565 1.64855 1.82510 2.62680 3.27972 3.28377 3.53165 3.89564 3.95133 4.07644 4.24944 4.31629 4.36010 4.38061 4.43216 4.51717 4.57992 4.73290 4.74965 4.87133 4.94453 4.98184 5.06418 5.08703 5.13837 5.16927 5.21622 5.27705 5.39276 5.47307 5.56413 6.03974 6.15871 6.26325 6.49308 6.61133 6.87397 6.99532 7.58881 8.87762 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.046097 B = 0.005937 C = 0.005882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.274802 B = 4715.245887 C = 4758.858196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.141 4.141 3 C 0.205 3.795 4 H -0.013 1.013 5 C -0.573 4.573 6 H 0.042 0.958 7 C -0.030 4.030 8 N -0.941 5.941 9 Si 1.111 2.889 10 H -0.274 1.274 11 H -0.276 1.276 12 H -0.288 1.288 13 N -0.678 5.678 14 C 0.068 3.932 15 C 0.102 3.898 16 H 0.072 0.928 17 C -0.146 4.146 18 C -0.115 4.115 19 C -0.151 4.151 20 C 0.059 3.941 21 N -0.689 5.689 22 H 0.040 0.960 23 H 0.050 0.950 24 H 0.055 0.945 25 H 0.036 0.964 26 H 0.035 0.965 27 H 0.256 0.744 28 H 0.346 0.654 29 H 0.015 0.985 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.083 0.917 39 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.775 0.795 17.219 17.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.181 4.181 3 C 0.096 3.904 4 H 0.005 0.995 5 C -0.612 4.612 6 H 0.060 0.940 7 C -0.227 4.227 8 N -0.580 5.580 9 Si 0.934 3.066 10 H -0.200 1.200 11 H -0.201 1.201 12 H -0.214 1.214 13 N -0.311 5.311 14 C -0.062 4.062 15 C -0.008 4.008 16 H 0.090 0.910 17 C -0.186 4.186 18 C -0.153 4.153 19 C -0.191 4.191 20 C -0.070 4.070 21 N -0.319 5.319 22 H 0.060 0.940 23 H 0.069 0.931 24 H 0.074 0.926 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.066 0.934 28 H 0.168 0.832 29 H 0.033 0.967 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.102 0.898 39 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.858 1.845 15.012 15.610 hybrid contribution 0.846 -1.528 2.250 2.848 sum -3.012 0.317 17.263 17.526 Atomic orbital electron populations 1.21433 0.94961 0.99847 1.01330 1.22036 0.97636 0.99929 0.98512 1.19101 0.92831 0.89580 0.88907 0.99543 1.22126 1.29525 1.17136 0.92369 0.93976 1.26983 0.96684 0.95917 1.03108 1.70870 1.23868 1.28454 1.34796 0.82999 0.75357 0.75523 0.72679 1.20019 1.20140 1.21393 1.60570 1.06763 1.61876 1.01877 1.21962 0.96487 0.96487 0.91307 1.21423 0.87590 0.99610 0.92198 0.91012 1.22194 1.00066 1.00734 0.95630 1.21533 0.96383 1.00689 0.96667 1.22216 0.95731 1.01360 0.99748 1.22035 0.98492 0.99674 0.86787 1.60496 1.18807 1.13881 1.38682 0.94035 0.93087 0.92643 0.94519 0.94599 0.93395 0.83214 0.96686 0.93091 0.92063 0.91433 0.91946 0.90904 0.90086 0.91959 0.91548 0.89833 0.84420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.95 9.38 71.98 0.68 -4.27 16 2 C -0.14 -6.64 5.46 30.59 0.17 -6.47 16 3 C 0.21 10.55 1.95 44.17 0.09 10.64 16 4 H -0.01 -0.77 7.31 -2.38 -0.02 -0.78 16 5 C -0.57 -32.63 7.43 25.60 0.19 -32.44 16 6 H 0.04 2.46 7.82 -2.91 -0.02 2.44 16 7 C -0.03 -1.70 5.27 84.65 0.45 -1.25 16 8 N -0.94 -57.62 12.88 21.45 0.28 -57.34 16 9 Si 1.11 51.58 29.91 68.60 2.05 53.63 16 10 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 11 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 12 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 13 N -0.68 -29.64 6.25 -495.45 -3.10 -32.74 16 14 C 0.07 2.44 5.20 86.30 0.45 2.89 16 15 C 0.10 2.87 2.73 44.94 0.12 2.99 16 16 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 17 C -0.15 -3.24 5.36 30.65 0.16 -3.08 16 18 C -0.12 -2.05 6.00 30.67 0.18 -1.87 16 19 C -0.15 -2.48 6.08 30.65 0.19 -2.30 16 20 C 0.06 1.19 6.55 86.33 0.57 1.76 16 21 N -0.69 -17.74 5.49 -491.70 -2.70 -20.44 16 22 H 0.04 1.92 7.30 -2.39 -0.02 1.91 16 23 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 24 H 0.05 2.13 6.24 -2.39 -0.01 2.12 16 25 H 0.04 1.93 6.27 -2.39 -0.01 1.91 16 26 H 0.04 1.52 7.04 -2.38 -0.02 1.51 16 27 H 0.26 15.88 6.04 -92.71 -0.56 15.32 16 28 H 0.35 14.51 5.51 -89.69 -0.49 14.01 16 29 H 0.02 0.54 7.00 -2.39 -0.02 0.52 16 30 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 31 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 37 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.34 8.33 8.79 -89.69 -0.79 7.54 16 Total: -1.00 -62.99 296.15 -0.29 -63.28 By element: Atomic # 1 Polarization: 27.09 SS G_CDS: -0.06 Total: 27.03 kcal Atomic # 6 Polarization: -36.65 SS G_CDS: 3.24 Total: -33.42 kcal Atomic # 7 Polarization: -105.00 SS G_CDS: -5.52 Total: -110.52 kcal Atomic # 14 Polarization: 51.58 SS G_CDS: 2.05 Total: 53.63 kcal Total: -62.99 -0.29 -63.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233869714.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.268 kcal (2) G-P(sol) polarization free energy of solvation -62.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds