Wall clock time and date at job start Mon Mar 30 2020 03:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47130 * 2 1 4 4 H 1.09005 * 109.46889 * 184.40461 * 3 2 1 5 5 C 1.50698 * 109.46985 * 304.40101 * 3 2 1 6 6 H 1.07997 * 119.99764 * 115.15704 * 5 3 2 7 7 C 1.37878 * 120.00233 * 295.15798 * 5 3 2 8 8 N 1.31514 * 119.99851 * 353.00417 * 7 5 3 9 9 Si 1.86802 * 120.00062 * 173.00929 * 7 5 3 10 10 H 1.48500 * 109.47084 * 269.99737 * 9 7 5 11 11 H 1.48504 * 109.46904 * 149.99995 * 9 7 5 12 12 H 1.48498 * 109.47161 * 29.99779 * 9 7 5 13 13 N 1.46898 * 109.47229 * 64.40390 * 3 2 1 14 14 C 1.46892 * 111.00119 * 85.17732 * 13 3 2 15 15 C 1.53006 * 109.47449 * 185.50987 * 14 13 3 16 16 H 1.09000 * 109.45859 * 65.02333 * 15 14 13 17 17 C 1.53032 * 109.46428 * 185.00116 * 15 14 13 18 18 C 1.53123 * 109.27822 * 179.19585 * 17 15 14 19 19 C 1.53111 * 109.15792 * 302.34845 * 18 17 15 20 20 C 1.53030 * 109.28213 * 57.65287 * 19 18 17 21 21 N 1.46842 * 109.52319 * 300.81688 * 20 19 18 22 22 H 1.09003 * 109.47053 * 305.52949 * 1 2 3 23 23 H 1.08998 * 109.47423 * 65.53142 * 1 2 3 24 24 H 1.08999 * 109.47461 * 185.52967 * 1 2 3 25 25 H 1.09000 * 109.46663 * 239.99679 * 2 1 3 26 26 H 1.09002 * 109.47294 * 120.00206 * 2 1 3 27 27 H 0.96998 * 120.00110 * 356.26313 * 8 7 5 28 28 H 1.00897 * 111.00171 * 209.13324 * 13 3 2 29 29 H 1.09006 * 109.47222 * 305.51192 * 14 13 3 30 30 H 1.09005 * 109.47660 * 65.50965 * 14 13 3 31 31 H 1.09001 * 109.50378 * 299.13459 * 17 15 14 32 32 H 1.08997 * 109.50638 * 59.21362 * 17 15 14 33 33 H 1.09004 * 109.51698 * 62.25083 * 18 17 15 34 34 H 1.08994 * 109.52087 * 182.37298 * 18 17 15 35 35 H 1.09011 * 109.50315 * 177.59522 * 19 18 17 36 36 H 1.08999 * 109.50386 * 297.70560 * 19 18 17 37 37 H 1.08997 * 109.46327 * 60.83764 * 20 19 18 38 38 H 1.09002 * 109.46012 * 180.81455 * 20 19 18 39 39 H 1.00899 * 111.00616 * 297.64951 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1272 1.4434 -0.0789 5 6 1.4506 2.1836 -1.1723 6 1 0.7764 3.0105 -1.0047 7 6 1.7720 1.8061 -2.4588 8 7 2.6957 0.8928 -2.6648 9 14 0.8957 2.5919 -3.9094 10 1 -0.3148 1.7997 -4.2447 11 1 1.8075 2.6225 -5.0811 12 1 0.4978 3.9781 -3.5555 13 7 1.6391 2.1036 1.2490 14 6 2.6054 1.8328 2.3217 15 6 2.0866 2.4200 3.6359 16 1 1.1753 1.9001 3.9312 17 6 3.1476 2.2480 4.7252 18 6 2.6322 2.8549 6.0332 19 6 2.2931 4.3302 5.8033 20 6 1.2569 4.4418 4.6827 21 7 1.7978 3.8482 3.4533 22 1 -0.3633 0.5972 0.8364 23 1 -0.3634 0.4256 -0.9353 24 1 -0.3634 -1.0228 0.0990 25 1 1.8932 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 3.1888 0.5241 -1.9153 28 1 1.5208 3.0961 1.1110 29 1 2.7348 0.7560 2.4309 30 1 3.5629 2.2902 2.0723 31 1 3.3504 1.1870 4.8714 32 1 4.0640 2.7555 4.4242 33 1 1.7377 2.3213 6.3546 34 1 3.4013 2.7722 6.8010 35 1 1.8854 4.7570 6.7198 36 1 3.1958 4.8711 5.5196 37 1 0.3495 3.9124 4.9730 38 1 1.0241 5.4920 4.5067 39 1 2.6183 4.3460 3.1418 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233869915.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:08 Heat of formation + Delta-G solvation = -43.984880 kcal Electronic energy + Delta-G solvation = -16395.446519 eV Core-core repulsion = 13949.688647 eV Total energy + Delta-G solvation = -2445.757872 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.05258 -38.08547 -34.87624 -33.03688 -32.52276 -31.40271 -28.01285 -25.91986 -25.29755 -24.03308 -22.28127 -21.33219 -21.02306 -18.91995 -16.71761 -16.59410 -16.06388 -15.63698 -15.61085 -15.40352 -15.16541 -14.88729 -14.08503 -13.96378 -13.85491 -13.16708 -13.05975 -13.00393 -12.64913 -12.56182 -12.18379 -12.13958 -11.92738 -11.83223 -11.80296 -11.60669 -11.49423 -11.24264 -10.54135 -10.37711 -9.18575 -8.95632 -8.53776 -6.23869 1.55872 1.63545 1.80861 2.60339 3.24487 3.30350 3.52099 3.89731 3.96078 4.08175 4.26480 4.31964 4.40739 4.45200 4.50175 4.59452 4.71213 4.72379 4.80950 4.88160 4.94748 5.04775 5.07772 5.11066 5.16445 5.18857 5.24970 5.39599 5.43790 5.58024 5.72310 5.96614 6.15056 6.21394 6.50584 6.56966 6.72973 6.97596 7.55006 8.82921 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.040035 B = 0.006117 C = 0.005773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.212956 B = 4576.592168 C = 4849.056375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.099 4.099 3 C 0.205 3.795 4 H -0.047 1.047 5 C -0.593 4.593 6 H 0.047 0.953 7 C -0.025 4.025 8 N -0.937 5.937 9 Si 1.111 2.889 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.272 1.272 13 N -0.665 5.665 14 C 0.069 3.931 15 C 0.106 3.894 16 H 0.074 0.926 17 C -0.148 4.148 18 C -0.114 4.114 19 C -0.152 4.152 20 C 0.060 3.940 21 N -0.688 5.688 22 H 0.056 0.944 23 H 0.033 0.967 24 H 0.040 0.960 25 H 0.029 0.971 26 H 0.033 0.967 27 H 0.257 0.743 28 H 0.341 0.659 29 H 0.058 0.942 30 H 0.005 0.995 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.081 0.919 39 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.004 5.008 16.068 16.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.138 4.138 3 C 0.096 3.904 4 H -0.029 1.029 5 C -0.631 4.631 6 H 0.066 0.934 7 C -0.224 4.224 8 N -0.575 5.575 9 Si 0.934 3.066 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.197 1.197 13 N -0.296 5.296 14 C -0.061 4.061 15 C -0.004 4.004 16 H 0.092 0.908 17 C -0.188 4.188 18 C -0.152 4.152 19 C -0.191 4.191 20 C -0.069 4.069 21 N -0.317 5.317 22 H 0.075 0.925 23 H 0.053 0.947 24 H 0.059 0.941 25 H 0.048 0.952 26 H 0.052 0.948 27 H 0.067 0.933 28 H 0.159 0.841 29 H 0.076 0.924 30 H 0.023 0.977 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.099 0.901 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.191 4.369 14.329 15.139 hybrid contribution 2.079 0.310 1.700 2.704 sum -0.112 4.679 16.029 16.698 Atomic orbital electron populations 1.21289 0.95118 0.98884 1.01110 1.21364 0.97457 0.97521 0.97463 1.19085 0.90567 0.92583 0.88160 1.02919 1.22240 1.30094 1.17945 0.92835 0.93425 1.27004 0.96379 0.95854 1.03121 1.70873 1.22829 1.28818 1.34950 0.82997 0.75169 0.75736 0.72658 1.20200 1.21368 1.19725 1.60365 1.46858 1.16466 1.05902 1.21969 0.92569 0.99282 0.92273 1.21405 0.97441 0.89153 0.92409 0.90757 1.22213 0.98525 1.01788 0.96253 1.21524 1.01338 0.95923 0.96405 1.22220 0.99899 0.96557 1.00434 1.22025 0.97245 1.00030 0.87646 1.60503 1.36534 1.02485 1.32220 0.92475 0.94749 0.94100 0.95234 0.94829 0.93298 0.84066 0.92352 0.97659 0.91313 0.92369 0.91793 0.90968 0.90098 0.92154 0.91454 0.90109 0.84624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.78 9.43 71.98 0.68 -4.11 16 2 C -0.10 -4.84 5.51 30.59 0.17 -4.67 16 3 C 0.21 10.52 1.93 44.17 0.09 10.61 16 4 H -0.05 -2.67 7.22 -2.38 -0.02 -2.68 16 5 C -0.59 -33.09 7.14 25.60 0.18 -32.91 16 6 H 0.05 2.67 7.67 -2.91 -0.02 2.65 16 7 C -0.03 -1.43 5.26 84.65 0.45 -0.98 16 8 N -0.94 -57.17 12.94 21.45 0.28 -56.90 16 9 Si 1.11 50.87 29.91 68.60 2.05 52.92 16 10 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 12 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 13 N -0.66 -28.59 5.58 -495.45 -2.76 -31.35 16 14 C 0.07 2.48 5.15 86.31 0.44 2.93 16 15 C 0.11 2.98 2.73 44.94 0.12 3.10 16 16 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 17 C -0.15 -3.30 5.36 30.65 0.16 -3.14 16 18 C -0.11 -2.06 6.00 30.67 0.18 -1.88 16 19 C -0.15 -2.58 6.08 30.64 0.19 -2.40 16 20 C 0.06 1.24 6.55 86.32 0.57 1.81 16 21 N -0.69 -18.31 5.68 -491.71 -2.79 -21.11 16 22 H 0.06 2.48 7.59 -2.39 -0.02 2.46 16 23 H 0.03 1.66 7.31 -2.39 -0.02 1.64 16 24 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.03 1.58 6.35 -2.39 -0.02 1.56 16 26 H 0.03 1.49 7.32 -2.39 -0.02 1.48 16 27 H 0.26 15.95 6.03 -92.71 -0.56 15.39 16 28 H 0.34 15.04 7.56 -89.70 -0.68 14.36 16 29 H 0.06 2.13 7.28 -2.38 -0.02 2.11 16 30 H 0.01 0.20 8.14 -2.38 -0.02 0.18 16 31 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 36 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.34 8.78 8.79 -89.69 -0.79 7.99 16 Total: -1.00 -61.49 299.24 -0.24 -61.73 By element: Atomic # 1 Polarization: 26.59 SS G_CDS: -0.24 Total: 26.35 kcal Atomic # 6 Polarization: -34.87 SS G_CDS: 3.23 Total: -31.65 kcal Atomic # 7 Polarization: -104.08 SS G_CDS: -5.28 Total: -109.36 kcal Atomic # 14 Polarization: 50.87 SS G_CDS: 2.05 Total: 52.92 kcal Total: -61.49 -0.24 -61.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233869915.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.750 kcal (2) G-P(sol) polarization free energy of solvation -61.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds