Wall clock time and date at job start Mon Mar 30 2020 03:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47305 * 2 1 4 4 H 1.08999 * 109.46984 * 302.39609 * 3 2 1 5 5 C 1.50692 * 109.47661 * 182.39022 * 3 2 1 6 6 H 1.08001 * 120.00764 * 245.23861 * 5 3 2 7 7 C 1.37879 * 119.99780 * 65.24026 * 5 3 2 8 8 N 1.31520 * 119.99846 * 5.41074 * 7 5 3 9 9 Si 1.86807 * 120.00203 * 185.41542 * 7 5 3 10 10 H 1.48494 * 109.47232 * 84.99641 * 9 7 5 11 11 H 1.48499 * 109.46511 * 324.99402 * 9 7 5 12 12 H 1.48503 * 109.46885 * 204.99981 * 9 7 5 13 13 N 1.46905 * 109.47129 * 62.39011 * 3 2 1 14 14 C 1.46959 * 110.99775 * 56.20340 * 13 3 2 15 15 C 1.53051 * 109.36260 * 183.18950 * 14 13 3 16 16 N 1.46960 * 109.36499 * 301.59620 * 15 14 13 17 17 C 1.46896 * 111.00029 * 183.18805 * 16 15 14 18 18 C 1.46959 * 110.87901 * 59.32346 * 16 15 14 19 19 C 1.46953 * 110.99894 * 180.02562 * 13 3 2 20 20 H 1.08991 * 109.49128 * 296.80020 * 19 13 3 21 21 C 1.52995 * 109.49123 * 56.84899 * 19 13 3 22 22 H 1.09004 * 109.46945 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47101 * 300.00137 * 1 2 3 24 24 H 1.09002 * 109.46914 * 59.99947 * 1 2 3 25 25 H 1.09001 * 109.47589 * 239.99907 * 2 1 3 26 26 H 1.09007 * 109.47380 * 119.99510 * 2 1 3 27 27 H 0.97007 * 119.99566 * 180.02562 * 8 7 5 28 28 H 1.09000 * 109.48925 * 303.15549 * 14 13 3 29 29 H 1.08998 * 109.48626 * 63.22117 * 14 13 3 30 30 H 1.08999 * 109.48750 * 181.63132 * 15 14 13 31 31 H 1.09001 * 109.50683 * 61.57679 * 15 14 13 32 32 H 1.08998 * 109.47270 * 296.20708 * 17 16 15 33 33 H 1.09002 * 109.47131 * 56.20369 * 17 16 15 34 34 H 1.08999 * 109.47295 * 176.20020 * 17 16 15 35 35 H 1.09000 * 109.48925 * 180.71197 * 18 16 15 36 36 H 1.08999 * 109.48754 * 60.64088 * 18 16 15 37 37 H 1.09007 * 109.47415 * 59.99280 * 21 19 13 38 38 H 1.08994 * 109.47670 * 179.97438 * 21 19 13 39 39 H 1.09003 * 109.47235 * 300.00106 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6421 1.9686 -0.8677 5 6 3.5458 1.4430 -0.0593 6 1 4.1190 1.8231 0.7735 7 6 4.1919 0.9583 -1.1767 8 7 3.4967 0.5946 -2.2323 9 14 6.0546 0.8178 -1.1914 10 1 6.4588 -0.4706 -0.5737 11 1 6.6417 1.9426 -0.4197 12 1 6.5439 0.8702 -2.5925 13 7 1.5981 2.1182 1.2273 14 6 2.0412 1.3845 2.4211 15 6 1.4948 2.0750 3.6729 16 7 1.9673 3.4661 3.7077 17 6 1.5254 4.1417 4.9349 18 6 1.5242 4.1997 2.5139 19 6 2.0702 3.5094 1.2617 20 1 3.1598 3.5232 1.2848 21 6 1.5765 4.2470 0.0155 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8901 27 1 3.9513 0.2532 -3.0183 28 1 1.6684 0.3611 2.3782 29 1 3.1305 1.3738 2.4578 30 1 1.8461 1.5493 4.5608 31 1 0.4051 2.0615 3.6497 32 1 0.4371 4.2011 4.9452 33 1 1.8667 3.5778 5.8031 34 1 1.9446 5.1473 4.9672 35 1 1.8970 5.2231 2.5568 36 1 0.4349 4.2104 2.4771 37 1 0.4868 4.2336 -0.0068 38 1 1.9264 5.2789 0.0415 39 1 1.9642 3.7539 -0.8760 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234031129.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:58 Heat of formation + Delta-G solvation = -12.182831 kcal Electronic energy + Delta-G solvation = -17230.148922 eV Core-core repulsion = 14785.770090 eV Total energy + Delta-G solvation = -2444.378832 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.48888 -37.38343 -34.63116 -33.75529 -32.39246 -29.66148 -27.84921 -27.54734 -25.04371 -24.35174 -22.51715 -21.39093 -20.37903 -18.06405 -17.27318 -16.37516 -16.19395 -16.00913 -15.51493 -15.23790 -15.02303 -14.64398 -13.80098 -13.59312 -13.30791 -13.17890 -13.12283 -13.04282 -12.72930 -12.67888 -12.52596 -12.29610 -12.06977 -11.91159 -11.73599 -11.58994 -11.30762 -11.09610 -10.85449 -10.36876 -9.22826 -8.86346 -8.02479 -6.20460 1.35685 1.37954 1.45834 2.41480 3.09467 3.18070 3.41581 4.06764 4.19507 4.26484 4.48701 4.52818 4.59049 4.66525 4.69014 4.70653 4.74728 4.83867 4.87907 4.88752 4.96171 5.03920 5.14852 5.23428 5.28691 5.38461 5.41117 5.46922 5.53638 5.66790 5.81299 6.00063 6.14924 6.20861 6.29319 6.45996 6.73390 7.01347 7.48794 8.94567 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.026135 B = 0.009829 C = 0.008793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.106635 B = 2847.902790 C = 3183.632816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.104 4.104 3 C 0.219 3.781 4 H 0.021 0.979 5 C -0.542 4.542 6 H 0.042 0.958 7 C 0.025 3.975 8 N -0.912 5.912 9 Si 0.938 3.062 10 H -0.277 1.277 11 H -0.277 1.277 12 H -0.284 1.284 13 N -0.526 5.526 14 C 0.061 3.939 15 C 0.067 3.933 16 N -0.564 5.564 17 C 0.029 3.971 18 C 0.074 3.926 19 C 0.089 3.911 20 H 0.018 0.982 21 C -0.130 4.130 22 H 0.047 0.953 23 H 0.058 0.942 24 H 0.033 0.967 25 H 0.045 0.955 26 H 0.036 0.964 27 H 0.260 0.740 28 H 0.073 0.927 29 H 0.014 0.986 30 H 0.087 0.913 31 H 0.039 0.961 32 H 0.029 0.971 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.039 0.961 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.306 4.857 10.277 12.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.143 4.143 3 C 0.112 3.888 4 H 0.039 0.961 5 C -0.581 4.581 6 H 0.060 0.940 7 C -0.175 4.175 8 N -0.551 5.551 9 Si 0.765 3.235 10 H -0.203 1.203 11 H -0.202 1.202 12 H -0.209 1.209 13 N -0.250 5.250 14 C -0.067 4.067 15 C -0.061 4.061 16 N -0.289 5.289 17 C -0.118 4.118 18 C -0.054 4.054 19 C -0.020 4.020 20 H 0.036 0.964 21 C -0.188 4.188 22 H 0.066 0.934 23 H 0.077 0.923 24 H 0.053 0.947 25 H 0.063 0.937 26 H 0.055 0.945 27 H 0.069 0.931 28 H 0.092 0.908 29 H 0.032 0.968 30 H 0.105 0.895 31 H 0.058 0.942 32 H 0.048 0.952 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.057 0.943 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -5.297 4.795 10.104 12.375 hybrid contribution 1.363 -0.339 -0.569 1.515 sum -3.935 4.456 9.535 11.236 Atomic orbital electron populations 1.21561 0.95906 0.99886 1.00882 1.21454 0.94831 0.98442 0.99561 1.19076 0.91185 0.90917 0.87643 0.96125 1.21884 0.94187 1.40783 1.01257 0.94003 1.25523 1.01316 0.95423 0.95267 1.70038 1.36446 1.44375 1.04249 0.85890 0.82300 0.78355 0.77003 1.20305 1.20187 1.20914 1.62644 1.58061 1.01620 1.02714 1.22007 0.97096 0.97578 0.90062 1.22135 0.97574 0.88809 0.97548 1.62101 1.60738 1.02840 1.03202 1.22367 0.98282 0.99767 0.91417 1.22131 0.97659 0.97024 0.88609 1.21426 0.96444 0.89449 0.94708 0.96365 1.21662 1.00924 0.99323 0.96879 0.93435 0.92309 0.94747 0.93665 0.94500 0.93053 0.90846 0.96811 0.89514 0.94238 0.95234 0.90581 0.90714 0.89768 0.94275 0.92232 0.91324 0.94414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.88 9.78 71.98 0.70 -4.17 16 2 C -0.10 -4.90 4.89 30.59 0.15 -4.75 16 3 C 0.22 10.81 1.25 44.17 0.06 10.86 16 4 H 0.02 1.16 6.23 -2.39 -0.01 1.14 16 5 C -0.54 -29.57 7.04 25.60 0.18 -29.39 16 6 H 0.04 2.37 5.83 -2.91 -0.02 2.35 16 7 C 0.02 1.36 5.25 84.65 0.44 1.80 16 8 N -0.91 -52.51 11.95 21.45 0.26 -52.26 16 9 Si 0.94 44.48 29.54 68.60 2.03 46.51 16 10 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 11 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 12 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 13 N -0.53 -22.04 3.89 -849.79 -3.31 -25.35 16 14 C 0.06 2.38 4.92 86.31 0.42 2.81 16 15 C 0.07 2.08 5.62 86.31 0.49 2.56 16 16 N -0.56 -17.11 4.97 -921.92 -4.58 -21.69 16 17 C 0.03 0.65 9.60 127.69 1.23 1.87 16 18 C 0.07 2.32 4.90 86.31 0.42 2.75 16 19 C 0.09 3.51 2.19 44.92 0.10 3.61 16 20 H 0.02 0.85 6.68 -2.39 -0.02 0.84 16 21 C -0.13 -4.84 8.86 71.98 0.64 -4.20 16 22 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 23 H 0.06 2.17 7.67 -2.39 -0.02 2.15 16 24 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.04 2.40 6.67 -2.39 -0.02 2.38 16 26 H 0.04 1.68 6.14 -2.38 -0.01 1.67 16 27 H 0.26 14.37 8.31 -92.70 -0.77 13.60 16 28 H 0.07 2.82 6.01 -2.39 -0.01 2.80 16 29 H 0.01 0.61 6.71 -2.39 -0.02 0.60 16 30 H 0.09 2.32 8.13 -2.39 -0.02 2.30 16 31 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.03 0.60 8.14 -2.39 -0.02 0.59 16 33 H 0.08 1.48 8.13 -2.39 -0.02 1.46 16 34 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 38 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.04 1.67 6.36 -2.39 -0.02 1.65 16 Total: -1.00 -59.54 292.12 0.22 -59.32 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: 0.99 Total: 9.72 kcal Atomic # 6 Polarization: -21.08 SS G_CDS: 4.83 Total: -16.25 kcal Atomic # 7 Polarization: -91.67 SS G_CDS: -7.63 Total: -99.30 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -59.54 0.22 -59.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234031129.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.133 kcal (2) G-P(sol) polarization free energy of solvation -59.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds