Wall clock time and date at job start Mon Mar 30 2020 03:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 N 1.46898 * 109.47548 * 179.97438 * 3 2 1 5 5 C 1.46954 * 111.00095 * 293.80422 * 4 3 2 6 6 H 1.09000 * 109.48826 * 56.83943 * 5 4 3 7 7 C 1.53002 * 109.48658 * 296.77635 * 5 4 3 8 8 C 1.53048 * 109.36623 * 176.81030 * 5 4 3 9 9 N 1.46957 * 109.36471 * 58.40199 * 8 5 4 10 10 C 1.46901 * 111.00042 * 176.81535 * 9 8 5 11 11 C 1.46958 * 110.87736 * 300.67721 * 9 8 5 12 12 C 1.46956 * 110.99985 * 169.99936 * 4 3 2 13 13 H 1.09003 * 109.48696 * 63.22678 * 12 4 3 14 14 C 1.50693 * 109.49249 * 303.15871 * 12 4 3 15 15 H 1.07999 * 120.00149 * 359.97438 * 14 12 4 16 16 C 1.37881 * 120.00084 * 180.02562 * 14 12 4 17 17 N 1.31515 * 119.99792 * 359.97438 * 16 14 12 18 18 Si 1.86803 * 120.00019 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47141 * 89.99782 * 18 16 14 20 20 H 1.48494 * 109.47017 * 210.00001 * 18 16 14 21 21 H 1.48507 * 109.46884 * 329.99724 * 18 16 14 22 22 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 25 25 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 26 26 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 27 27 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 28 28 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 29 29 H 1.09000 * 109.47095 * 60.00177 * 7 5 4 30 30 H 1.08997 * 109.47026 * 180.02562 * 7 5 4 31 31 H 1.09003 * 109.47306 * 299.99633 * 7 5 4 32 32 H 1.09003 * 109.49055 * 298.43122 * 8 5 4 33 33 H 1.08998 * 109.51225 * 178.37645 * 8 5 4 34 34 H 1.09001 * 109.46889 * 179.84461 * 10 9 8 35 35 H 1.09000 * 109.46973 * 299.84336 * 10 9 8 36 36 H 1.09000 * 109.47499 * 59.84249 * 10 9 8 37 37 H 1.09000 * 109.49557 * 299.35265 * 11 9 8 38 38 H 1.09000 * 109.49135 * 179.28831 * 11 9 8 39 39 H 0.97006 * 119.99976 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0352 0.8890 1.2561 6 1 3.6407 -0.1163 1.4038 7 6 3.6109 1.7810 2.4246 8 6 5.5630 0.8329 1.1852 9 7 6.0897 2.1840 0.9471 10 6 7.5587 2.1840 0.9476 11 6 5.5636 2.7374 -0.3085 12 6 4.0357 2.7936 -0.2376 13 1 3.7335 3.4507 0.5779 14 6 3.4910 3.3234 -1.5390 15 1 2.8209 2.7173 -2.1306 16 6 3.8490 4.5815 -1.9749 17 7 4.6654 5.3194 -1.2548 18 14 3.1733 5.2385 -3.5878 19 1 1.9003 5.9599 -3.3339 20 1 4.1578 6.1703 -4.1940 21 1 2.9245 4.1076 -4.5175 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.6766 1.9564 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 2.5228 1.8223 2.4737 30 1 4.0017 1.3705 3.3556 31 1 4.0064 2.7860 2.2768 32 1 5.8652 0.1757 0.3697 33 1 5.9573 0.4495 2.1262 34 1 7.9220 3.1956 0.7665 35 1 7.9217 1.8352 1.9144 36 1 7.9224 1.5212 0.1624 37 1 5.8658 2.1020 -1.1410 38 1 5.9579 3.7428 -0.4563 39 1 4.9170 6.2047 -1.5613 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249861433.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:55 Heat of formation + Delta-G solvation = 7.296334 kcal Electronic energy + Delta-G solvation = -17159.782180 eV Core-core repulsion = 14716.248028 eV Total energy + Delta-G solvation = -2443.534152 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.92450 -35.37627 -33.26616 -32.52336 -30.39845 -27.82190 -26.34667 -25.24613 -24.45855 -22.25056 -21.35131 -20.06807 -17.65019 -16.56493 -15.43644 -14.94473 -14.47466 -14.05748 -13.83523 -13.65418 -13.53658 -13.14287 -12.57510 -12.30051 -11.96210 -11.60911 -11.47010 -11.22775 -11.05465 -10.95787 -10.88827 -10.64175 -10.55458 -10.35106 -10.21402 -9.96754 -9.84036 -9.28510 -8.85961 -8.45182 -7.45223 -7.01959 -6.02729 -4.06957 3.29781 3.36755 3.40641 4.39665 4.85305 4.96474 5.31214 5.46451 5.54649 5.58944 5.78978 5.80412 5.89485 6.00730 6.06261 6.13360 6.15927 6.22752 6.29333 6.35885 6.40032 6.46620 6.54058 6.58184 6.82342 6.85686 6.88775 7.00198 7.07939 7.43754 7.65950 7.78533 7.95934 8.03517 8.20948 8.37009 8.66829 9.01381 9.57966 11.03851 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.018031 B = 0.012871 C = 0.008166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.547835 B = 2174.955434 C = 3427.862151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C 0.059 3.941 4 N -0.532 5.532 5 C 0.081 3.919 6 H 0.068 0.932 7 C -0.175 4.175 8 C 0.067 3.933 9 N -0.546 5.546 10 C 0.031 3.969 11 C 0.067 3.933 12 C 0.221 3.779 13 H 0.015 0.985 14 C -0.507 4.507 15 H 0.064 0.936 16 C 0.061 3.939 17 N -0.890 5.890 18 Si 0.895 3.105 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 H 0.048 0.952 23 H 0.046 0.954 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.063 0.937 27 H 0.085 0.915 28 H 0.023 0.977 29 H 0.044 0.956 30 H 0.043 0.957 31 H 0.075 0.925 32 H 0.029 0.971 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.053 0.947 36 H 0.014 0.986 37 H 0.014 0.986 38 H 0.106 0.894 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.209 -7.558 4.316 8.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C -0.069 4.069 4 N -0.256 5.256 5 C -0.029 4.029 6 H 0.086 0.914 7 C -0.233 4.233 8 C -0.062 4.062 9 N -0.271 5.271 10 C -0.118 4.118 11 C -0.060 4.060 12 C 0.114 3.886 13 H 0.032 0.968 14 C -0.546 4.546 15 H 0.082 0.918 16 C -0.141 4.141 17 N -0.529 5.529 18 Si 0.723 3.277 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 H 0.068 0.932 23 H 0.066 0.934 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.103 0.897 28 H 0.042 0.958 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.094 0.906 32 H 0.047 0.953 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.032 0.968 37 H 0.032 0.968 38 H 0.124 0.876 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.102 -7.362 4.294 8.594 hybrid contribution -0.212 0.407 -0.838 0.955 sum -1.314 -6.955 3.456 7.876 Atomic orbital electron populations 1.21723 0.96612 1.00651 1.01597 1.21567 0.94500 0.98277 1.01551 1.22048 0.88756 0.94752 1.01305 1.62413 1.06503 1.26591 1.30138 1.21661 0.93949 0.97546 0.89729 0.91377 1.22309 1.00060 1.02918 0.98057 1.22048 0.94750 0.90422 0.99003 1.62309 1.06101 1.20373 1.38291 1.22243 0.89294 1.01017 0.99255 1.22489 0.97569 1.00301 0.85626 1.19250 0.90111 0.82987 0.96246 0.96784 1.21165 1.28039 0.99813 1.05563 0.91761 1.24951 0.95142 0.96755 0.97238 1.69883 1.34433 1.10618 1.37940 0.86543 0.78651 0.78775 0.83738 1.20736 1.21271 1.19874 0.93239 0.93444 0.92767 0.92960 0.91839 0.89655 0.95848 0.93670 0.93832 0.90596 0.95305 0.92209 0.91787 0.92859 0.96771 0.96797 0.87579 0.92895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.91 37.16 0.37 -1.64 16 2 C -0.12 -1.94 5.87 -26.73 -0.16 -2.10 16 3 C 0.06 1.17 4.56 -3.83 -0.02 1.16 16 4 N -0.53 -11.55 4.47 -219.95 -0.98 -12.54 16 5 C 0.08 1.52 2.77 -67.66 -0.19 1.34 16 6 H 0.07 1.17 6.34 -51.93 -0.33 0.84 16 7 C -0.17 -3.21 8.38 37.16 0.31 -2.90 16 8 C 0.07 1.24 5.05 -3.77 -0.02 1.22 16 9 N -0.55 -11.38 4.28 -242.75 -1.04 -12.42 16 10 C 0.03 0.54 9.60 60.07 0.58 1.12 16 11 C 0.07 1.65 4.66 -3.76 -0.02 1.63 16 12 C 0.22 5.55 1.57 -68.81 -0.11 5.44 16 13 H 0.01 0.41 6.35 -51.93 -0.33 0.08 16 14 C -0.51 -13.72 7.80 -34.44 -0.27 -13.98 16 15 H 0.06 1.74 6.51 -52.49 -0.34 1.40 16 16 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 17 N -0.89 -25.00 11.34 55.43 0.63 -24.37 16 18 Si 0.89 21.12 29.54 -169.99 -5.02 16.09 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 22 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.05 0.80 6.49 -51.93 -0.34 0.46 16 26 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.09 1.85 5.99 -51.93 -0.31 1.54 16 28 H 0.02 0.47 6.10 -51.93 -0.32 0.15 16 29 H 0.04 0.80 6.35 -51.93 -0.33 0.47 16 30 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 1.63 5.94 -51.93 -0.31 1.32 16 32 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.06 1.13 8.13 -51.93 -0.42 0.71 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 37 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.11 2.86 6.12 -51.93 -0.32 2.55 16 39 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 290.47 15.07 4.38 4.38 Total: -1.00 -27.62 290.47 -8.36 -35.97 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -6.71 Total: 0.04 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: 0.39 Total: -7.16 kcal Atomic # 7 Polarization: -47.93 SS G_CDS: -1.39 Total: -49.33 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -27.62 -8.36 -35.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249861433.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.269 kcal (2) G-P(sol) polarization free energy of solvation -27.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds