Wall clock time and date at job start Mon Mar 30 2020 03:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 N 1.46898 * 109.47548 * 179.97438 * 3 2 1 5 5 C 1.46954 * 111.00095 * 293.80422 * 4 3 2 6 6 H 1.09000 * 109.48826 * 56.83943 * 5 4 3 7 7 C 1.53002 * 109.48658 * 296.77635 * 5 4 3 8 8 C 1.53048 * 109.36623 * 176.81030 * 5 4 3 9 9 N 1.46957 * 109.36471 * 58.40199 * 8 5 4 10 10 C 1.46901 * 111.00042 * 176.81535 * 9 8 5 11 11 C 1.46958 * 110.87736 * 300.67721 * 9 8 5 12 12 C 1.46956 * 110.99985 * 169.99936 * 4 3 2 13 13 H 1.09003 * 109.48696 * 63.22678 * 12 4 3 14 14 C 1.50693 * 109.49249 * 303.15871 * 12 4 3 15 15 H 1.07999 * 120.00149 * 359.97438 * 14 12 4 16 16 C 1.37881 * 120.00084 * 180.02562 * 14 12 4 17 17 N 1.31515 * 119.99792 * 359.97438 * 16 14 12 18 18 Si 1.86803 * 120.00019 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47141 * 89.99782 * 18 16 14 20 20 H 1.48494 * 109.47017 * 210.00001 * 18 16 14 21 21 H 1.48507 * 109.46884 * 329.99724 * 18 16 14 22 22 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 25 25 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 26 26 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 27 27 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 28 28 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 29 29 H 1.09000 * 109.47095 * 60.00177 * 7 5 4 30 30 H 1.08997 * 109.47026 * 180.02562 * 7 5 4 31 31 H 1.09003 * 109.47306 * 299.99633 * 7 5 4 32 32 H 1.09003 * 109.49055 * 298.43122 * 8 5 4 33 33 H 1.08998 * 109.51225 * 178.37645 * 8 5 4 34 34 H 1.09001 * 109.46889 * 179.84461 * 10 9 8 35 35 H 1.09000 * 109.46973 * 299.84336 * 10 9 8 36 36 H 1.09000 * 109.47499 * 59.84249 * 10 9 8 37 37 H 1.09000 * 109.49557 * 299.35265 * 11 9 8 38 38 H 1.09000 * 109.49135 * 179.28831 * 11 9 8 39 39 H 0.97006 * 119.99976 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0352 0.8890 1.2561 6 1 3.6407 -0.1163 1.4038 7 6 3.6109 1.7810 2.4246 8 6 5.5630 0.8329 1.1852 9 7 6.0897 2.1840 0.9471 10 6 7.5587 2.1840 0.9476 11 6 5.5636 2.7374 -0.3085 12 6 4.0357 2.7936 -0.2376 13 1 3.7335 3.4507 0.5779 14 6 3.4910 3.3234 -1.5390 15 1 2.8209 2.7173 -2.1306 16 6 3.8490 4.5815 -1.9749 17 7 4.6654 5.3194 -1.2548 18 14 3.1733 5.2385 -3.5878 19 1 1.9003 5.9599 -3.3339 20 1 4.1578 6.1703 -4.1940 21 1 2.9245 4.1076 -4.5175 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.6766 1.9564 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 2.5228 1.8223 2.4737 30 1 4.0017 1.3705 3.3556 31 1 4.0064 2.7860 2.2768 32 1 5.8652 0.1757 0.3697 33 1 5.9573 0.4495 2.1262 34 1 7.9220 3.1956 0.7665 35 1 7.9217 1.8352 1.9144 36 1 7.9224 1.5212 0.1624 37 1 5.8658 2.1020 -1.1410 38 1 5.9579 3.7428 -0.4563 39 1 4.9170 6.2047 -1.5613 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000249861433.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:55 Heat of formation + Delta-G solvation = -11.115594 kcal Electronic energy + Delta-G solvation = -17160.580581 eV Core-core repulsion = 14716.248028 eV Total energy + Delta-G solvation = -2444.332553 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.59504 -36.93800 -35.24283 -33.91772 -32.21165 -29.42826 -27.86351 -27.22420 -25.91390 -23.81151 -23.12645 -21.58110 -19.35845 -18.54085 -17.18829 -16.55377 -16.22352 -15.70761 -15.59494 -15.15885 -15.01087 -14.67168 -14.17453 -13.93289 -13.47073 -13.12737 -12.98146 -12.89326 -12.62887 -12.57311 -12.51920 -12.22154 -12.15758 -12.06232 -11.90126 -11.69641 -11.46566 -10.92458 -10.77788 -10.50593 -9.11508 -8.77872 -8.11416 -6.22977 1.40698 1.41834 1.52286 2.41436 3.10573 3.30877 3.41210 4.07392 4.12384 4.26942 4.34788 4.41070 4.55765 4.57066 4.64244 4.69893 4.73573 4.78337 4.88558 4.93255 4.97890 5.03251 5.04593 5.15030 5.18791 5.26873 5.38105 5.41712 5.48788 5.59648 5.70987 5.78212 6.14485 6.29715 6.36153 6.55987 6.83870 6.94444 7.46025 8.94118 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.018031 B = 0.012871 C = 0.008166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.547835 B = 2174.955434 C = 3427.862151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.110 4.110 3 C 0.061 3.939 4 N -0.541 5.541 5 C 0.076 3.924 6 H 0.096 0.904 7 C -0.164 4.164 8 C 0.066 3.934 9 N -0.557 5.557 10 C 0.031 3.969 11 C 0.085 3.915 12 C 0.230 3.770 13 H -0.023 1.023 14 C -0.523 4.523 15 H 0.057 0.943 16 C 0.015 3.985 17 N -0.916 5.916 18 Si 0.957 3.043 19 H -0.276 1.276 20 H -0.283 1.283 21 H -0.270 1.270 22 H 0.053 0.947 23 H 0.071 0.929 24 H 0.048 0.952 25 H 0.066 0.934 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.018 0.982 29 H 0.046 0.954 30 H 0.072 0.928 31 H 0.038 0.962 32 H 0.024 0.976 33 H 0.095 0.905 34 H 0.054 0.946 35 H 0.085 0.915 36 H 0.019 0.981 37 H -0.007 1.007 38 H 0.075 0.925 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.579 -9.318 4.986 10.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.148 4.148 3 C -0.067 4.067 4 N -0.266 5.266 5 C -0.033 4.033 6 H 0.114 0.886 7 C -0.223 4.223 8 C -0.062 4.062 9 N -0.282 5.282 10 C -0.117 4.117 11 C -0.044 4.044 12 C 0.122 3.878 13 H -0.006 1.006 14 C -0.562 4.562 15 H 0.075 0.925 16 C -0.184 4.184 17 N -0.555 5.555 18 Si 0.783 3.217 19 H -0.201 1.201 20 H -0.208 1.208 21 H -0.195 1.195 22 H 0.072 0.928 23 H 0.090 0.910 24 H 0.067 0.933 25 H 0.085 0.915 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.036 0.964 29 H 0.065 0.935 30 H 0.091 0.909 31 H 0.057 0.943 32 H 0.043 0.957 33 H 0.113 0.887 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.037 0.963 37 H 0.011 0.989 38 H 0.093 0.907 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.474 -9.143 4.977 10.514 hybrid contribution -0.083 0.928 -0.986 1.356 sum -1.557 -8.215 3.991 9.265 Atomic orbital electron populations 1.21692 0.94570 1.02276 1.01605 1.21477 0.96207 0.95206 1.01923 1.22048 0.87731 0.97240 0.99647 1.62391 1.07655 1.24200 1.32306 1.21864 0.94355 0.98644 0.88465 0.88567 1.22177 1.00087 1.00812 0.99174 1.22172 0.94572 0.88963 1.00508 1.62246 1.08104 1.22022 1.35818 1.22305 0.87235 1.00903 1.01236 1.22051 0.97185 0.98377 0.86761 1.18950 0.90625 0.84206 0.94018 1.00601 1.21439 1.28118 1.00239 1.06430 0.92452 1.25697 0.95385 0.97007 1.00336 1.70021 1.35308 1.10798 1.39401 0.85571 0.78107 0.78132 0.79922 1.20148 1.20833 1.19471 0.92765 0.90963 0.93327 0.91510 0.92374 0.92429 0.96416 0.93496 0.90949 0.94274 0.95725 0.88719 0.92662 0.89599 0.96278 0.98895 0.90716 0.92914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 9.91 71.98 0.71 -2.84 16 2 C -0.11 -3.32 5.87 30.59 0.18 -3.14 16 3 C 0.06 2.42 4.56 86.30 0.39 2.81 16 4 N -0.54 -23.54 4.47 -849.79 -3.80 -27.34 16 5 C 0.08 2.72 2.77 44.92 0.12 2.84 16 6 H 0.10 2.96 6.34 -2.39 -0.02 2.94 16 7 C -0.16 -5.79 8.38 71.98 0.60 -5.19 16 8 C 0.07 2.32 5.05 86.31 0.44 2.76 16 9 N -0.56 -22.98 4.28 -921.92 -3.95 -26.93 16 10 C 0.03 1.07 9.60 127.69 1.23 2.29 16 11 C 0.08 4.27 4.66 86.31 0.40 4.67 16 12 C 0.23 11.94 1.57 44.18 0.07 12.00 16 13 H -0.02 -1.38 6.35 -2.39 -0.02 -1.40 16 14 C -0.52 -29.29 7.80 25.60 0.20 -29.09 16 15 H 0.06 3.21 6.51 -2.91 -0.02 3.19 16 16 C 0.01 0.83 5.30 84.66 0.45 1.28 16 17 N -0.92 -53.19 11.34 21.45 0.24 -52.95 16 18 Si 0.96 44.12 29.54 68.60 2.03 46.15 16 19 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 20 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 21 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 22 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 23 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 25 H 0.07 1.82 6.49 -2.39 -0.02 1.80 16 26 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.06 2.56 5.99 -2.39 -0.01 2.55 16 28 H 0.02 0.71 6.10 -2.39 -0.01 0.70 16 29 H 0.05 1.61 6.35 -2.39 -0.02 1.60 16 30 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.04 1.68 5.94 -2.39 -0.01 1.66 16 32 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 34 H 0.05 1.95 8.13 -2.39 -0.02 1.93 16 35 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 37 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 38 H 0.07 4.22 6.12 -2.39 -0.01 4.21 16 39 H 0.26 14.46 8.31 -92.70 -0.77 13.69 16 Total: -1.00 -61.44 290.47 0.32 -61.12 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: 1.00 Total: 11.55 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: 4.80 Total: -11.60 kcal Atomic # 7 Polarization: -99.72 SS G_CDS: -7.50 Total: -107.22 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -61.44 0.32 -61.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249861433.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.004 kcal (2) G-P(sol) polarization free energy of solvation -61.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds