Wall clock time and date at job start Mon Mar 30 2020 03:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46641 * 2 1 4 4 N 1.46904 * 109.46847 * 180.02562 * 3 2 1 5 5 C 1.47908 * 111.00174 * 65.49204 * 4 3 2 6 6 C 1.50802 * 108.66372 * 153.69580 * 5 4 3 7 7 C 1.53907 * 111.98662 * 92.33107 * 6 5 4 8 8 N 1.48073 * 112.60331 * 318.84568 * 7 6 5 9 9 C 1.46896 * 110.99632 * 192.08321 * 8 7 6 10 10 C 1.44570 * 113.85091 * 318.20092 * 8 7 6 11 11 C 1.40016 * 111.00003 * 297.51817 * 4 3 2 12 12 H 1.09007 * 108.95653 * 67.42289 * 11 4 3 13 13 C 1.50703 * 108.95873 * 308.68381 * 11 4 3 14 14 H 1.07992 * 120.00184 * 325.56908 * 13 11 4 15 15 C 1.37877 * 119.99777 * 145.57494 * 13 11 4 16 16 N 1.31517 * 120.00378 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 119.99899 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47061 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47158 * 119.99711 * 17 15 13 20 20 H 1.48504 * 109.47294 * 239.99669 * 17 15 13 21 21 H 1.08990 * 109.47926 * 59.99676 * 1 2 3 22 22 H 1.09000 * 109.46917 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47015 * 299.99289 * 1 2 3 24 24 H 1.09002 * 109.47015 * 240.00711 * 2 1 3 25 25 H 1.08991 * 109.47446 * 120.00113 * 2 1 3 26 26 H 1.08994 * 109.47077 * 60.00828 * 3 2 1 27 27 H 1.08997 * 109.47728 * 300.00311 * 3 2 1 28 28 H 1.08998 * 109.62854 * 273.49648 * 5 4 3 29 29 H 1.09001 * 109.63130 * 33.88753 * 5 4 3 30 30 H 1.09005 * 108.95095 * 213.32432 * 6 5 4 31 31 H 1.09006 * 108.95515 * 331.96977 * 6 5 4 32 32 H 1.08994 * 108.90723 * 197.96923 * 7 6 5 33 33 H 1.09002 * 108.72495 * 79.58903 * 7 6 5 34 34 H 1.08999 * 109.46970 * 187.68002 * 9 8 7 35 35 H 1.09000 * 109.47882 * 307.68653 * 9 8 7 36 36 H 1.09003 * 109.47028 * 67.69157 * 9 8 7 37 37 H 1.08998 * 109.57985 * 334.42653 * 10 8 7 38 38 H 1.08997 * 109.57441 * 214.03669 * 10 8 7 39 39 H 0.96996 * 120.00308 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5089 1.4426 -0.0006 5 6 4.0385 0.8700 -1.2573 6 6 5.4070 1.4497 -1.5127 7 6 6.5243 0.5707 -0.9231 8 7 6.1829 0.0381 0.4157 9 6 7.3625 -0.5484 1.0654 10 6 5.5397 1.0011 1.2812 11 6 4.0112 0.8385 1.1584 12 1 3.7686 -0.2240 1.1375 13 6 3.3555 1.4663 2.3613 14 1 3.0980 2.5150 2.3501 15 6 3.0844 0.7017 3.4762 16 7 3.3976 -0.5755 3.4897 17 14 2.2723 1.4801 4.9675 18 1 2.0241 2.9197 4.7010 19 1 0.9823 0.7973 5.2414 20 1 3.1654 1.3421 6.1459 21 1 -0.3634 0.5138 -0.8898 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5137 0.8901 24 1 1.8933 -0.5137 -0.8901 25 1 1.8934 -0.5138 0.8899 26 1 1.6766 1.9563 0.8900 27 1 1.6765 1.9564 -0.8899 28 1 4.1114 -0.2135 -1.1639 29 1 3.3737 1.1224 -2.0835 30 1 5.5553 1.5467 -2.5883 31 1 5.4628 2.4391 -1.0587 32 1 7.4358 1.1632 -0.8451 33 1 6.7058 -0.2648 -1.5993 34 1 7.0591 -1.0516 1.9835 35 1 7.8273 -1.2692 0.3926 36 1 8.0766 0.2403 1.3024 37 1 5.8248 2.0095 0.9813 38 1 5.8439 0.8251 2.3130 39 1 3.2066 -1.1135 4.2739 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000249869765.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:58 Heat of formation + Delta-G solvation = -8.201973 kcal Electronic energy + Delta-G solvation = -17292.890177 eV Core-core repulsion = 14848.683968 eV Total energy + Delta-G solvation = -2444.206209 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.43480 -37.45634 -34.92068 -33.92547 -32.69305 -29.75867 -27.72964 -26.90234 -25.38854 -24.25501 -22.86342 -20.73492 -20.44268 -18.27947 -17.21465 -16.59356 -16.10526 -15.96722 -15.58248 -15.32470 -15.06631 -14.30998 -14.17448 -13.82124 -13.70013 -13.11504 -13.03866 -12.78755 -12.68551 -12.57542 -12.30720 -12.21148 -12.01650 -11.80359 -11.74298 -11.65167 -11.35103 -11.06541 -10.79975 -10.52770 -8.89806 -8.55534 -8.01721 -6.13720 1.38550 1.42091 1.52446 2.44488 3.12978 3.33157 3.61566 4.09744 4.24233 4.27047 4.35362 4.39929 4.50337 4.59174 4.63310 4.75726 4.81550 4.82800 4.93996 4.95681 4.99808 5.02517 5.07982 5.15254 5.19212 5.31094 5.32103 5.50530 5.62963 5.66761 5.74356 5.93901 6.24574 6.43627 6.51368 6.68751 7.12429 7.21173 7.58513 9.02033 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.020790 B = 0.012523 C = 0.008960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.503425 B = 2235.384293 C = 3124.207504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.147 4.147 3 C 0.083 3.917 4 N -0.555 5.555 5 C 0.070 3.930 6 C -0.112 4.112 7 C 0.064 3.936 8 N -0.575 5.575 9 C 0.041 3.959 10 C 0.099 3.901 11 C 0.230 3.770 12 H -0.003 1.003 13 C -0.509 4.509 14 H 0.047 0.953 15 C 0.022 3.978 16 N -0.916 5.916 17 Si 0.941 3.059 18 H -0.267 1.267 19 H -0.283 1.283 20 H -0.284 1.284 21 H 0.070 0.930 22 H 0.050 0.950 23 H 0.043 0.957 24 H 0.049 0.951 25 H 0.035 0.965 26 H 0.059 0.941 27 H 0.071 0.929 28 H 0.020 0.980 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.054 0.946 32 H 0.033 0.967 33 H 0.077 0.923 34 H 0.045 0.955 35 H 0.079 0.921 36 H 0.022 0.978 37 H 0.020 0.980 38 H 0.033 0.967 39 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.763 1.827 -9.093 9.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.186 4.186 3 C -0.045 4.045 4 N -0.278 5.278 5 C -0.057 4.057 6 C -0.150 4.150 7 C -0.063 4.063 8 N -0.301 5.301 9 C -0.107 4.107 10 C -0.030 4.030 11 C 0.120 3.880 12 H 0.015 0.985 13 C -0.548 4.548 14 H 0.066 0.934 15 C -0.177 4.177 16 N -0.555 5.555 17 Si 0.768 3.232 18 H -0.191 1.191 19 H -0.209 1.209 20 H -0.210 1.210 21 H 0.089 0.911 22 H 0.069 0.931 23 H 0.062 0.938 24 H 0.067 0.933 25 H 0.054 0.946 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.038 0.962 29 H 0.094 0.906 30 H 0.114 0.886 31 H 0.073 0.927 32 H 0.051 0.949 33 H 0.095 0.905 34 H 0.064 0.936 35 H 0.098 0.902 36 H 0.041 0.959 37 H 0.038 0.962 38 H 0.051 0.949 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.621 1.791 -9.033 9.351 hybrid contribution 0.036 -0.154 1.549 1.557 sum 1.657 1.637 -7.485 7.839 Atomic orbital electron populations 1.21592 0.94655 1.01275 1.01724 1.21962 0.97033 0.99499 1.00154 1.21920 0.87112 0.94651 1.00812 1.59573 1.07167 1.58528 1.02529 1.21663 0.95980 0.96322 0.91769 1.21460 0.93648 0.98722 1.01160 1.22465 0.96544 0.97848 0.89447 1.60822 1.27623 1.37388 1.04233 1.22243 0.90931 0.98553 0.99012 1.21818 0.96604 0.91265 0.93318 1.17934 0.90023 0.93209 0.86784 0.98487 1.21353 1.38652 0.95401 0.99412 0.93450 1.25570 0.96238 0.95064 1.00849 1.70113 1.48874 1.06800 1.29728 0.85765 0.78247 0.79021 0.80187 1.19149 1.20891 1.21037 0.91063 0.93076 0.93783 0.93264 0.94617 0.92242 0.91106 0.96180 0.90563 0.88553 0.92699 0.94897 0.90459 0.93607 0.90201 0.95930 0.96220 0.94875 0.93402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.40 9.91 71.98 0.71 -3.69 16 2 C -0.15 -5.92 5.37 30.59 0.16 -5.76 16 3 C 0.08 3.36 4.82 86.30 0.42 3.78 16 4 N -0.55 -24.06 4.09 -890.67 -3.64 -27.70 16 5 C 0.07 2.52 4.31 85.40 0.37 2.89 16 6 C -0.11 -3.48 5.39 30.19 0.16 -3.32 16 7 C 0.06 2.05 5.46 86.38 0.47 2.52 16 8 N -0.58 -23.33 4.20 -921.01 -3.86 -27.19 16 9 C 0.04 1.43 9.28 127.69 1.19 2.62 16 10 C 0.10 4.68 4.81 87.15 0.42 5.10 16 11 C 0.23 11.61 1.21 45.82 0.06 11.67 16 12 H 0.00 -0.15 5.71 -2.38 -0.01 -0.16 16 13 C -0.51 -27.85 6.36 25.60 0.16 -27.68 16 14 H 0.05 2.64 7.54 -2.91 -0.02 2.62 16 15 C 0.02 1.23 5.46 84.65 0.46 1.69 16 16 N -0.92 -53.66 12.80 21.45 0.27 -53.38 16 17 Si 0.94 44.10 29.54 68.60 2.03 46.13 16 18 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 19 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 20 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 21 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 22 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 23 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.05 1.87 7.19 -2.39 -0.02 1.85 16 25 H 0.03 1.80 6.58 -2.39 -0.02 1.78 16 26 H 0.06 2.70 6.42 -2.39 -0.02 2.68 16 27 H 0.07 2.43 7.93 -2.39 -0.02 2.41 16 28 H 0.02 0.81 7.32 -2.39 -0.02 0.79 16 29 H 0.08 2.35 7.72 -2.39 -0.02 2.33 16 30 H 0.10 2.27 8.14 -2.38 -0.02 2.25 16 31 H 0.05 1.88 7.25 -2.38 -0.02 1.86 16 32 H 0.03 0.97 8.03 -2.39 -0.02 0.95 16 33 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.04 1.79 8.07 -2.39 -0.02 1.77 16 35 H 0.08 2.34 8.11 -2.39 -0.02 2.32 16 36 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.02 0.91 6.94 -2.39 -0.02 0.90 16 38 H 0.03 1.73 7.42 -2.39 -0.02 1.72 16 39 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -61.44 293.73 0.36 -61.08 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: 0.99 Total: 11.25 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: 4.58 Total: -10.19 kcal Atomic # 7 Polarization: -101.04 SS G_CDS: -7.23 Total: -108.27 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -61.44 0.36 -61.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249869765.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.883 kcal (2) G-P(sol) polarization free energy of solvation -61.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds