Wall clock time and date at job start Mon Mar 30 2020 03:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46745 * 2 1 4 4 N 1.46906 * 109.47005 * 179.97438 * 3 2 1 5 5 C 1.46963 * 110.99986 * 293.79983 * 4 3 2 6 6 C 1.53047 * 109.36449 * 176.81135 * 5 4 3 7 7 H 1.08997 * 109.50821 * 298.42032 * 6 5 4 8 8 C 1.52997 * 109.48896 * 178.36976 * 6 5 4 9 9 N 1.46952 * 109.36479 * 58.39992 * 6 5 4 10 10 C 1.46906 * 111.00054 * 176.81155 * 9 6 5 11 11 C 1.46953 * 110.88155 * 300.67993 * 9 6 5 12 12 C 1.46952 * 111.00054 * 169.99887 * 4 3 2 13 13 H 1.09000 * 109.50834 * 63.21282 * 12 4 3 14 14 C 1.50698 * 109.48953 * 303.15376 * 12 4 3 15 15 H 1.07998 * 119.99971 * 354.51755 * 14 12 4 16 16 C 1.37878 * 119.99822 * 174.51197 * 14 12 4 17 17 N 1.31512 * 119.99730 * 161.94947 * 16 14 12 18 18 Si 1.86798 * 120.00243 * 341.95375 * 16 14 12 19 19 H 1.48501 * 109.47470 * 179.97438 * 18 16 14 20 20 H 1.48499 * 109.46855 * 299.99719 * 18 16 14 21 21 H 1.48501 * 109.47285 * 59.99559 * 18 16 14 22 22 H 1.09000 * 109.47428 * 300.00006 * 1 2 3 23 23 H 1.08993 * 109.47009 * 60.00084 * 1 2 3 24 24 H 1.09000 * 109.46962 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47428 * 239.99994 * 2 1 3 26 26 H 1.09003 * 109.47073 * 119.99852 * 2 1 3 27 27 H 1.08998 * 109.47577 * 60.00682 * 3 2 1 28 28 H 1.08993 * 109.47299 * 299.99738 * 3 2 1 29 29 H 1.09006 * 109.48869 * 56.84401 * 5 4 3 30 30 H 1.09002 * 109.48368 * 296.77848 * 5 4 3 31 31 H 1.09006 * 109.47047 * 300.10839 * 8 6 5 32 32 H 1.08998 * 109.47559 * 60.10861 * 8 6 5 33 33 H 1.09006 * 109.47472 * 180.10800 * 8 6 5 34 34 H 1.08991 * 109.47355 * 187.75239 * 10 9 6 35 35 H 1.09000 * 109.47174 * 307.75576 * 10 9 6 36 36 H 1.08995 * 109.46954 * 67.75352 * 10 9 6 37 37 H 1.09005 * 109.48876 * 299.35322 * 11 9 6 38 38 H 1.09005 * 109.48937 * 179.29250 * 11 9 6 39 39 H 0.97001 * 120.00268 * 354.55739 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5090 1.4426 0.0006 5 6 4.0351 0.8891 1.2563 6 6 5.5629 0.8330 1.1853 7 1 5.8655 0.1758 0.3701 8 6 6.1159 0.2952 2.5066 9 7 6.0896 2.1841 0.9470 10 6 7.5587 2.1841 0.9477 11 6 5.5635 2.7375 -0.3085 12 6 4.0357 2.7936 -0.2376 13 1 3.7335 3.4511 0.5776 14 6 3.4911 3.3233 -1.5391 15 1 2.8927 2.6860 -2.1733 16 6 3.7566 4.6216 -1.9200 17 7 3.6027 4.9830 -3.1751 18 14 4.3349 5.8669 -0.6536 19 1 4.5498 7.1801 -1.3128 20 1 3.3059 6.0078 0.4078 21 1 5.6093 5.4027 -0.0489 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.6766 1.9563 -0.8899 29 1 3.6408 -0.1163 1.4040 30 1 3.7328 1.5247 2.0886 31 1 5.8125 0.9522 3.3217 32 1 5.7251 -0.7069 2.6830 33 1 7.2041 0.2571 2.4564 34 1 7.9220 3.2109 0.9073 35 1 7.9217 1.7057 1.8573 36 1 7.9224 1.6357 0.0788 37 1 5.8658 2.1019 -1.1410 38 1 5.9580 3.7429 -0.4563 39 1 3.3792 4.3200 -3.8469 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249870339.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:49 Heat of formation + Delta-G solvation = 5.107086 kcal Electronic energy + Delta-G solvation = -17004.846072 eV Core-core repulsion = 14561.216987 eV Total energy + Delta-G solvation = -2443.629085 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.94846 -35.75875 -33.46328 -32.23742 -31.44079 -28.27882 -27.04805 -24.82207 -23.57521 -23.01601 -20.52143 -20.06988 -18.81490 -17.55463 -15.33926 -15.26917 -14.79199 -14.26676 -14.00793 -13.78832 -13.51783 -13.27379 -12.94490 -12.38264 -11.93404 -11.78272 -11.68212 -11.44058 -11.37636 -11.30015 -11.10158 -10.73012 -10.68943 -10.41971 -10.07572 -10.02912 -9.87308 -9.48855 -8.75746 -8.31527 -7.73842 -7.30329 -6.46121 -4.07054 3.41336 3.46391 3.63559 4.49454 4.49937 4.73551 5.22195 5.27818 5.36514 5.45796 5.58268 5.60670 5.71177 5.77370 5.85897 5.91559 6.00421 6.05402 6.11438 6.16485 6.23188 6.29379 6.29712 6.39655 6.44129 6.49541 6.61633 6.71531 6.75627 6.99283 7.21902 7.56137 7.66784 7.83830 8.07482 8.34144 8.45419 8.97402 9.59758 10.92371 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.016949 B = 0.013743 C = 0.008345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.607420 B = 2036.892239 C = 3354.685482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C 0.064 3.936 4 N -0.530 5.530 5 C 0.060 3.940 6 C 0.084 3.916 7 H 0.042 0.958 8 C -0.144 4.144 9 N -0.547 5.547 10 C 0.022 3.978 11 C 0.055 3.945 12 C 0.199 3.801 13 H 0.000 1.000 14 C -0.591 4.591 15 H 0.066 0.934 16 C 0.035 3.965 17 N -0.902 5.902 18 Si 1.036 2.964 19 H -0.286 1.286 20 H -0.284 1.284 21 H -0.271 1.271 22 H 0.049 0.951 23 H 0.054 0.946 24 H 0.048 0.952 25 H 0.064 0.936 26 H 0.052 0.948 27 H 0.018 0.982 28 H 0.090 0.910 29 H 0.066 0.934 30 H 0.029 0.971 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.019 0.981 37 H 0.033 0.967 38 H 0.076 0.924 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.888 -8.345 9.422 12.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C -0.064 4.064 4 N -0.255 5.255 5 C -0.069 4.069 6 C -0.025 4.025 7 H 0.060 0.940 8 C -0.202 4.202 9 N -0.273 5.273 10 C -0.127 4.127 11 C -0.072 4.072 12 C 0.091 3.909 13 H 0.017 0.983 14 C -0.630 4.630 15 H 0.084 0.916 16 C -0.171 4.171 17 N -0.536 5.536 18 Si 0.865 3.135 19 H -0.212 1.212 20 H -0.211 1.211 21 H -0.198 1.198 22 H 0.068 0.932 23 H 0.074 0.926 24 H 0.067 0.933 25 H 0.083 0.917 26 H 0.070 0.930 27 H 0.036 0.964 28 H 0.109 0.891 29 H 0.085 0.915 30 H 0.047 0.953 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.038 0.962 37 H 0.052 0.948 38 H 0.094 0.906 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.271 -6.727 9.599 11.940 hybrid contribution -0.305 -1.622 -0.241 1.668 sum 1.966 -8.349 9.358 12.694 Atomic orbital electron populations 1.21719 0.96376 1.00784 1.01724 1.21568 0.94743 0.97952 1.01589 1.22019 0.87921 0.95013 1.01420 1.62086 1.06994 1.25269 1.31102 1.22159 0.93490 0.99121 0.92130 1.21579 0.94851 0.89710 0.96340 0.94047 1.21887 1.00548 1.00269 0.97525 1.62326 1.06607 1.21026 1.37305 1.22393 0.88956 1.01392 0.99925 1.22883 0.97685 0.99165 0.87469 1.19557 0.89886 0.84655 0.96812 0.98291 1.21970 1.36522 0.99513 1.04964 0.91556 1.25669 0.94508 0.97916 0.99002 1.70836 1.43571 1.38304 1.00842 0.84177 0.77470 0.76414 0.75474 1.21212 1.21083 1.19780 0.93183 0.92647 0.93299 0.91731 0.92959 0.96388 0.89142 0.91523 0.95266 0.92116 0.92628 0.92613 0.91925 0.91752 0.96244 0.94848 0.90582 0.92106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.91 37.16 0.37 -1.66 16 2 C -0.12 -1.94 5.87 -26.73 -0.16 -2.10 16 3 C 0.06 1.29 4.75 -3.82 -0.02 1.27 16 4 N -0.53 -11.51 4.52 -227.88 -1.03 -12.54 16 5 C 0.06 1.10 4.69 -3.77 -0.02 1.08 16 6 C 0.08 1.47 2.56 -67.66 -0.17 1.30 16 7 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 8 C -0.14 -1.95 8.88 37.16 0.33 -1.62 16 9 N -0.55 -10.70 4.78 -234.74 -1.12 -11.82 16 10 C 0.02 0.35 9.36 60.07 0.56 0.91 16 11 C 0.06 1.27 4.58 -3.77 -0.02 1.26 16 12 C 0.20 4.88 1.53 -68.81 -0.11 4.78 16 13 H 0.00 -0.01 6.79 -51.93 -0.35 -0.36 16 14 C -0.59 -16.46 7.91 -34.44 -0.27 -16.73 16 15 H 0.07 1.99 7.00 -52.49 -0.37 1.63 16 16 C 0.03 1.00 5.33 -17.82 -0.10 0.90 16 17 N -0.90 -27.37 13.69 55.43 0.76 -26.61 16 18 Si 1.04 25.38 26.40 -169.99 -4.49 20.90 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.27 -6.24 5.59 56.52 0.32 -5.93 16 22 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.05 0.78 6.49 -51.93 -0.34 0.44 16 27 H 0.02 0.36 8.12 -51.93 -0.42 -0.06 16 28 H 0.09 2.05 6.10 -51.93 -0.32 1.73 16 29 H 0.07 1.08 6.34 -51.93 -0.33 0.76 16 30 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.69 6.19 -51.93 -0.32 0.37 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.06 0.88 5.83 -51.93 -0.30 0.58 16 36 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 37 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.08 1.83 4.84 -51.93 -0.25 1.57 16 39 H 0.27 8.15 8.73 -40.82 -0.36 7.79 16 LS Contribution 290.58 15.07 4.38 4.38 Total: -1.00 -29.48 290.58 -7.99 -37.47 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -6.89 Total: -1.17 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: 0.40 Total: -10.61 kcal Atomic # 7 Polarization: -49.57 SS G_CDS: -1.39 Total: -50.97 kcal Atomic # 14 Polarization: 25.38 SS G_CDS: -4.49 Total: 20.90 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -29.48 -7.99 -37.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249870339.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.578 kcal (2) G-P(sol) polarization free energy of solvation -29.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds