Wall clock time and date at job start Mon Mar 30 2020 03:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46745 * 2 1 4 4 N 1.46906 * 109.47005 * 179.97438 * 3 2 1 5 5 C 1.46963 * 110.99986 * 293.79983 * 4 3 2 6 6 C 1.53047 * 109.36449 * 176.81135 * 5 4 3 7 7 H 1.08997 * 109.50821 * 298.42032 * 6 5 4 8 8 C 1.52997 * 109.48896 * 178.36976 * 6 5 4 9 9 N 1.46952 * 109.36479 * 58.39992 * 6 5 4 10 10 C 1.46906 * 111.00054 * 176.81155 * 9 6 5 11 11 C 1.46953 * 110.88155 * 300.67993 * 9 6 5 12 12 C 1.46952 * 111.00054 * 169.99887 * 4 3 2 13 13 H 1.09000 * 109.50834 * 63.21282 * 12 4 3 14 14 C 1.50698 * 109.48953 * 303.15376 * 12 4 3 15 15 H 1.07998 * 119.99971 * 354.51755 * 14 12 4 16 16 C 1.37878 * 119.99822 * 174.51197 * 14 12 4 17 17 N 1.31512 * 119.99730 * 161.94947 * 16 14 12 18 18 Si 1.86798 * 120.00243 * 341.95375 * 16 14 12 19 19 H 1.48501 * 109.47470 * 179.97438 * 18 16 14 20 20 H 1.48499 * 109.46855 * 299.99719 * 18 16 14 21 21 H 1.48501 * 109.47285 * 59.99559 * 18 16 14 22 22 H 1.09000 * 109.47428 * 300.00006 * 1 2 3 23 23 H 1.08993 * 109.47009 * 60.00084 * 1 2 3 24 24 H 1.09000 * 109.46962 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47428 * 239.99994 * 2 1 3 26 26 H 1.09003 * 109.47073 * 119.99852 * 2 1 3 27 27 H 1.08998 * 109.47577 * 60.00682 * 3 2 1 28 28 H 1.08993 * 109.47299 * 299.99738 * 3 2 1 29 29 H 1.09006 * 109.48869 * 56.84401 * 5 4 3 30 30 H 1.09002 * 109.48368 * 296.77848 * 5 4 3 31 31 H 1.09006 * 109.47047 * 300.10839 * 8 6 5 32 32 H 1.08998 * 109.47559 * 60.10861 * 8 6 5 33 33 H 1.09006 * 109.47472 * 180.10800 * 8 6 5 34 34 H 1.08991 * 109.47355 * 187.75239 * 10 9 6 35 35 H 1.09000 * 109.47174 * 307.75576 * 10 9 6 36 36 H 1.08995 * 109.46954 * 67.75352 * 10 9 6 37 37 H 1.09005 * 109.48876 * 299.35322 * 11 9 6 38 38 H 1.09005 * 109.48937 * 179.29250 * 11 9 6 39 39 H 0.97001 * 120.00268 * 354.55739 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5090 1.4426 0.0006 5 6 4.0351 0.8891 1.2563 6 6 5.5629 0.8330 1.1853 7 1 5.8655 0.1758 0.3701 8 6 6.1159 0.2952 2.5066 9 7 6.0896 2.1841 0.9470 10 6 7.5587 2.1841 0.9477 11 6 5.5635 2.7375 -0.3085 12 6 4.0357 2.7936 -0.2376 13 1 3.7335 3.4511 0.5776 14 6 3.4911 3.3233 -1.5391 15 1 2.8927 2.6860 -2.1733 16 6 3.7566 4.6216 -1.9200 17 7 3.6027 4.9830 -3.1751 18 14 4.3349 5.8669 -0.6536 19 1 4.5498 7.1801 -1.3128 20 1 3.3059 6.0078 0.4078 21 1 5.6093 5.4027 -0.0489 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.6766 1.9563 -0.8899 29 1 3.6408 -0.1163 1.4040 30 1 3.7328 1.5247 2.0886 31 1 5.8125 0.9522 3.3217 32 1 5.7251 -0.7069 2.6830 33 1 7.2041 0.2571 2.4564 34 1 7.9220 3.2109 0.9073 35 1 7.9217 1.7057 1.8573 36 1 7.9224 1.6357 0.0788 37 1 5.8658 2.1019 -1.1410 38 1 5.9580 3.7429 -0.4563 39 1 3.3792 4.3200 -3.8469 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000249870339.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:49 Heat of formation + Delta-G solvation = -16.591398 kcal Electronic energy + Delta-G solvation = -17005.786989 eV Core-core repulsion = 14561.216987 eV Total energy + Delta-G solvation = -2444.570002 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.55389 -37.27502 -35.39211 -33.74678 -33.12532 -29.87275 -28.54882 -26.25792 -25.36326 -24.53388 -22.11270 -21.62499 -20.47804 -19.70240 -16.99734 -16.79814 -16.27950 -15.95436 -15.46142 -15.40175 -15.23654 -14.82025 -14.37348 -13.83838 -13.54311 -13.36378 -13.10211 -13.06252 -12.77757 -12.61967 -12.58517 -12.31650 -12.16921 -11.96268 -11.81949 -11.63225 -11.52628 -11.16767 -10.79180 -10.50802 -9.29435 -9.04242 -8.76544 -6.37189 1.43258 1.47253 1.68926 2.44179 2.93351 3.09282 3.17622 3.94564 4.00621 4.16159 4.20227 4.29473 4.39728 4.45985 4.51969 4.58687 4.62059 4.69820 4.75219 4.80046 4.83851 4.90464 4.93942 4.97524 5.04858 5.15253 5.17279 5.24175 5.37059 5.39789 5.43044 5.73920 5.99394 6.11947 6.13754 6.33631 6.59456 6.71283 7.37962 8.60945 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.016949 B = 0.013743 C = 0.008345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.607420 B = 2036.892239 C = 3354.685482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.110 4.110 3 C 0.066 3.934 4 N -0.546 5.546 5 C 0.060 3.940 6 C 0.080 3.920 7 H 0.030 0.970 8 C -0.134 4.134 9 N -0.555 5.555 10 C 0.020 3.980 11 C 0.067 3.933 12 C 0.203 3.797 13 H -0.013 1.013 14 C -0.588 4.588 15 H 0.028 0.972 16 C -0.011 4.011 17 N -0.932 5.932 18 Si 1.076 2.924 19 H -0.285 1.285 20 H -0.273 1.273 21 H -0.246 1.246 22 H 0.057 0.943 23 H 0.043 0.957 24 H 0.075 0.925 25 H 0.054 0.946 26 H 0.073 0.927 27 H 0.018 0.982 28 H 0.051 0.949 29 H 0.094 0.906 30 H 0.027 0.973 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.097 0.903 36 H 0.018 0.982 37 H 0.010 0.990 38 H 0.064 0.936 39 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.845 -9.705 12.351 15.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.148 4.148 3 C -0.062 4.062 4 N -0.270 5.270 5 C -0.069 4.069 6 C -0.029 4.029 7 H 0.048 0.952 8 C -0.191 4.191 9 N -0.280 5.280 10 C -0.127 4.127 11 C -0.061 4.061 12 C 0.094 3.906 13 H 0.005 0.995 14 C -0.627 4.627 15 H 0.047 0.953 16 C -0.211 4.211 17 N -0.568 5.568 18 Si 0.898 3.102 19 H -0.211 1.211 20 H -0.199 1.199 21 H -0.171 1.171 22 H 0.076 0.924 23 H 0.062 0.938 24 H 0.093 0.907 25 H 0.073 0.927 26 H 0.091 0.909 27 H 0.036 0.964 28 H 0.069 0.931 29 H 0.112 0.888 30 H 0.045 0.955 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.115 0.885 36 H 0.037 0.963 37 H 0.028 0.972 38 H 0.082 0.918 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.230 -8.125 12.544 15.291 hybrid contribution -0.650 -1.300 -1.178 1.871 sum 2.580 -9.425 11.366 14.989 Atomic orbital electron populations 1.21694 0.94421 1.02473 1.01589 1.21483 0.96384 0.94864 1.02027 1.21997 0.87272 0.97528 0.99413 1.62066 1.07898 1.23425 1.33659 1.22308 0.94412 1.00070 0.90065 1.21744 0.94204 0.88498 0.98413 0.95152 1.21822 1.01433 1.01238 0.94643 1.62301 1.08783 1.22443 1.34481 1.22504 0.86620 1.02059 1.01543 1.22492 0.96456 0.98410 0.88736 1.19339 0.91042 0.86061 0.94147 0.99517 1.22082 1.35546 0.99215 1.05847 0.95330 1.26950 0.94287 1.00114 0.99736 1.70950 1.46280 1.37923 1.01623 0.83670 0.78522 0.74296 0.73700 1.21121 1.19886 1.17110 0.92361 0.93821 0.90653 0.92732 0.90874 0.96405 0.93073 0.88816 0.95523 0.91913 0.90310 0.91052 0.91736 0.88489 0.96294 0.97185 0.91754 0.93694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.70 9.91 71.98 0.71 -2.99 16 2 C -0.11 -3.39 5.87 30.59 0.18 -3.21 16 3 C 0.07 2.66 4.75 86.30 0.41 3.07 16 4 N -0.55 -23.68 4.52 -874.88 -3.95 -27.63 16 5 C 0.06 2.06 4.69 86.31 0.40 2.46 16 6 C 0.08 2.58 2.56 44.92 0.12 2.69 16 7 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 8 C -0.13 -3.00 8.88 71.98 0.64 -2.36 16 9 N -0.55 -20.50 4.78 -896.57 -4.29 -24.78 16 10 C 0.02 0.60 9.36 127.69 1.20 1.79 16 11 C 0.07 3.09 4.58 86.31 0.40 3.49 16 12 C 0.20 10.07 1.53 44.18 0.07 10.14 16 13 H -0.01 -0.65 6.79 -2.39 -0.02 -0.67 16 14 C -0.59 -34.19 7.91 25.60 0.20 -33.99 16 15 H 0.03 1.83 7.00 -2.91 -0.02 1.81 16 16 C -0.01 -0.67 5.33 84.66 0.45 -0.22 16 17 N -0.93 -58.87 13.69 21.45 0.29 -58.58 16 18 Si 1.08 51.64 26.40 68.60 1.81 53.45 16 19 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 20 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 21 H -0.25 -10.77 5.59 99.48 0.56 -10.22 16 22 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 23 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.07 1.96 6.49 -2.39 -0.02 1.94 16 27 H 0.02 0.71 8.12 -2.39 -0.02 0.69 16 28 H 0.05 2.44 6.10 -2.39 -0.01 2.43 16 29 H 0.09 2.72 6.34 -2.38 -0.02 2.70 16 30 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 32 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.07 1.39 6.19 -2.38 -0.01 1.38 16 34 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.10 2.22 5.83 -2.39 -0.01 2.20 16 36 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 38 H 0.06 3.06 4.84 -2.38 -0.01 3.04 16 39 H 0.25 16.30 8.73 -92.71 -0.81 15.49 16 Total: -1.00 -66.52 290.58 -0.56 -67.07 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: 0.81 Total: 9.58 kcal Atomic # 6 Polarization: -23.88 SS G_CDS: 4.78 Total: -19.11 kcal Atomic # 7 Polarization: -103.05 SS G_CDS: -7.95 Total: -111.00 kcal Atomic # 14 Polarization: 51.64 SS G_CDS: 1.81 Total: 53.45 kcal Total: -66.52 -0.56 -67.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249870339.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.483 kcal (2) G-P(sol) polarization free energy of solvation -66.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds