Wall clock time and date at job start Mon Mar 30 2020 03:22:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.52998 * 109.46745 * 2 1
4 4 N 1.46906 * 109.47005 * 179.97438 * 3 2 1
5 5 C 1.46963 * 110.99986 * 293.79983 * 4 3 2
6 6 C 1.53047 * 109.36449 * 176.81135 * 5 4 3
7 7 H 1.08997 * 109.50821 * 298.42032 * 6 5 4
8 8 C 1.52997 * 109.48896 * 178.36976 * 6 5 4
9 9 N 1.46952 * 109.36479 * 58.39992 * 6 5 4
10 10 C 1.46906 * 111.00054 * 176.81155 * 9 6 5
11 11 C 1.46953 * 110.88155 * 300.67993 * 9 6 5
12 12 C 1.46952 * 111.00054 * 169.99887 * 4 3 2
13 13 H 1.09000 * 109.50834 * 63.21282 * 12 4 3
14 14 C 1.50698 * 109.48953 * 303.15376 * 12 4 3
15 15 H 1.07998 * 119.99971 * 354.51755 * 14 12 4
16 16 C 1.37878 * 119.99822 * 174.51197 * 14 12 4
17 17 N 1.31512 * 119.99730 * 161.94947 * 16 14 12
18 18 Si 1.86798 * 120.00243 * 341.95375 * 16 14 12
19 19 H 1.48501 * 109.47470 * 179.97438 * 18 16 14
20 20 H 1.48499 * 109.46855 * 299.99719 * 18 16 14
21 21 H 1.48501 * 109.47285 * 59.99559 * 18 16 14
22 22 H 1.09000 * 109.47428 * 300.00006 * 1 2 3
23 23 H 1.08993 * 109.47009 * 60.00084 * 1 2 3
24 24 H 1.09000 * 109.46962 * 180.02562 * 1 2 3
25 25 H 1.09000 * 109.47428 * 239.99994 * 2 1 3
26 26 H 1.09003 * 109.47073 * 119.99852 * 2 1 3
27 27 H 1.08998 * 109.47577 * 60.00682 * 3 2 1
28 28 H 1.08993 * 109.47299 * 299.99738 * 3 2 1
29 29 H 1.09006 * 109.48869 * 56.84401 * 5 4 3
30 30 H 1.09002 * 109.48368 * 296.77848 * 5 4 3
31 31 H 1.09006 * 109.47047 * 300.10839 * 8 6 5
32 32 H 1.08998 * 109.47559 * 60.10861 * 8 6 5
33 33 H 1.09006 * 109.47472 * 180.10800 * 8 6 5
34 34 H 1.08991 * 109.47355 * 187.75239 * 10 9 6
35 35 H 1.09000 * 109.47174 * 307.75576 * 10 9 6
36 36 H 1.08995 * 109.46954 * 67.75352 * 10 9 6
37 37 H 1.09005 * 109.48876 * 299.35322 * 11 9 6
38 38 H 1.09005 * 109.48937 * 179.29250 * 11 9 6
39 39 H 0.97001 * 120.00268 * 354.55739 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 7 3.5090 1.4426 0.0006
5 6 4.0351 0.8891 1.2563
6 6 5.5629 0.8330 1.1853
7 1 5.8655 0.1758 0.3701
8 6 6.1159 0.2952 2.5066
9 7 6.0896 2.1841 0.9470
10 6 7.5587 2.1841 0.9477
11 6 5.5635 2.7375 -0.3085
12 6 4.0357 2.7936 -0.2376
13 1 3.7335 3.4511 0.5776
14 6 3.4911 3.3233 -1.5391
15 1 2.8927 2.6860 -2.1733
16 6 3.7566 4.6216 -1.9200
17 7 3.6027 4.9830 -3.1751
18 14 4.3349 5.8669 -0.6536
19 1 4.5498 7.1801 -1.3128
20 1 3.3059 6.0078 0.4078
21 1 5.6093 5.4027 -0.0489
22 1 -0.3634 0.5138 0.8900
23 1 -0.3633 0.5138 -0.8899
24 1 -0.3633 -1.0277 0.0005
25 1 1.8934 -0.5138 -0.8900
26 1 1.8934 -0.5138 0.8900
27 1 1.6767 1.9563 0.8900
28 1 1.6766 1.9563 -0.8899
29 1 3.6408 -0.1163 1.4040
30 1 3.7328 1.5247 2.0886
31 1 5.8125 0.9522 3.3217
32 1 5.7251 -0.7069 2.6830
33 1 7.2041 0.2571 2.4564
34 1 7.9220 3.2109 0.9073
35 1 7.9217 1.7057 1.8573
36 1 7.9224 1.6357 0.0788
37 1 5.8658 2.1019 -1.1410
38 1 5.9580 3.7429 -0.4563
39 1 3.3792 4.3200 -3.8469
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000249870339.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:22:49
Heat of formation + Delta-G solvation = -16.591398 kcal
Electronic energy + Delta-G solvation = -17005.786989 eV
Core-core repulsion = 14561.216987 eV
Total energy + Delta-G solvation = -2444.570002 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-40.55389 -37.27502 -35.39211 -33.74678 -33.12532 -29.87275 -28.54882 -26.25792
-25.36326 -24.53388 -22.11270 -21.62499 -20.47804 -19.70240 -16.99734 -16.79814
-16.27950 -15.95436 -15.46142 -15.40175 -15.23654 -14.82025 -14.37348 -13.83838
-13.54311 -13.36378 -13.10211 -13.06252 -12.77757 -12.61967 -12.58517 -12.31650
-12.16921 -11.96268 -11.81949 -11.63225 -11.52628 -11.16767 -10.79180 -10.50802
-9.29435 -9.04242 -8.76544 -6.37189 1.43258 1.47253 1.68926 2.44179
2.93351 3.09282 3.17622 3.94564 4.00621 4.16159 4.20227 4.29473
4.39728 4.45985 4.51969 4.58687 4.62059 4.69820 4.75219 4.80046
4.83851 4.90464 4.93942 4.97524 5.04858 5.15253 5.17279 5.24175
5.37059 5.39789 5.43044 5.73920 5.99394 6.11947 6.13754 6.33631
6.59456 6.71283 7.37962 8.60945
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.016949 B = 0.013743 C = 0.008345
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1651.607420 B = 2036.892239 C = 3354.685482
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.110 4.110
3 C 0.066 3.934
4 N -0.546 5.546
5 C 0.060 3.940
6 C 0.080 3.920
7 H 0.030 0.970
8 C -0.134 4.134
9 N -0.555 5.555
10 C 0.020 3.980
11 C 0.067 3.933
12 C 0.203 3.797
13 H -0.013 1.013
14 C -0.588 4.588
15 H 0.028 0.972
16 C -0.011 4.011
17 N -0.932 5.932
18 Si 1.076 2.924
19 H -0.285 1.285
20 H -0.273 1.273
21 H -0.246 1.246
22 H 0.057 0.943
23 H 0.043 0.957
24 H 0.075 0.925
25 H 0.054 0.946
26 H 0.073 0.927
27 H 0.018 0.982
28 H 0.051 0.949
29 H 0.094 0.906
30 H 0.027 0.973
31 H 0.062 0.938
32 H 0.078 0.922
33 H 0.071 0.929
34 H 0.064 0.936
35 H 0.097 0.903
36 H 0.018 0.982
37 H 0.010 0.990
38 H 0.064 0.936
39 H 0.254 0.746
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.845 -9.705 12.351 15.963
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.148 4.148
3 C -0.062 4.062
4 N -0.270 5.270
5 C -0.069 4.069
6 C -0.029 4.029
7 H 0.048 0.952
8 C -0.191 4.191
9 N -0.280 5.280
10 C -0.127 4.127
11 C -0.061 4.061
12 C 0.094 3.906
13 H 0.005 0.995
14 C -0.627 4.627
15 H 0.047 0.953
16 C -0.211 4.211
17 N -0.568 5.568
18 Si 0.898 3.102
19 H -0.211 1.211
20 H -0.199 1.199
21 H -0.171 1.171
22 H 0.076 0.924
23 H 0.062 0.938
24 H 0.093 0.907
25 H 0.073 0.927
26 H 0.091 0.909
27 H 0.036 0.964
28 H 0.069 0.931
29 H 0.112 0.888
30 H 0.045 0.955
31 H 0.081 0.919
32 H 0.097 0.903
33 H 0.089 0.911
34 H 0.083 0.917
35 H 0.115 0.885
36 H 0.037 0.963
37 H 0.028 0.972
38 H 0.082 0.918
39 H 0.063 0.937
Dipole moment (debyes) X Y Z Total
from point charges 3.230 -8.125 12.544 15.291
hybrid contribution -0.650 -1.300 -1.178 1.871
sum 2.580 -9.425 11.366 14.989
Atomic orbital electron populations
1.21694 0.94421 1.02473 1.01589 1.21483 0.96384 0.94864 1.02027
1.21997 0.87272 0.97528 0.99413 1.62066 1.07898 1.23425 1.33659
1.22308 0.94412 1.00070 0.90065 1.21744 0.94204 0.88498 0.98413
0.95152 1.21822 1.01433 1.01238 0.94643 1.62301 1.08783 1.22443
1.34481 1.22504 0.86620 1.02059 1.01543 1.22492 0.96456 0.98410
0.88736 1.19339 0.91042 0.86061 0.94147 0.99517 1.22082 1.35546
0.99215 1.05847 0.95330 1.26950 0.94287 1.00114 0.99736 1.70950
1.46280 1.37923 1.01623 0.83670 0.78522 0.74296 0.73700 1.21121
1.19886 1.17110 0.92361 0.93821 0.90653 0.92732 0.90874 0.96405
0.93073 0.88816 0.95523 0.91913 0.90310 0.91052 0.91736 0.88489
0.96294 0.97185 0.91754 0.93694
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.70 9.91 71.98 0.71 -2.99 16
2 C -0.11 -3.39 5.87 30.59 0.18 -3.21 16
3 C 0.07 2.66 4.75 86.30 0.41 3.07 16
4 N -0.55 -23.68 4.52 -874.88 -3.95 -27.63 16
5 C 0.06 2.06 4.69 86.31 0.40 2.46 16
6 C 0.08 2.58 2.56 44.92 0.12 2.69 16
7 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16
8 C -0.13 -3.00 8.88 71.98 0.64 -2.36 16
9 N -0.55 -20.50 4.78 -896.57 -4.29 -24.78 16
10 C 0.02 0.60 9.36 127.69 1.20 1.79 16
11 C 0.07 3.09 4.58 86.31 0.40 3.49 16
12 C 0.20 10.07 1.53 44.18 0.07 10.14 16
13 H -0.01 -0.65 6.79 -2.39 -0.02 -0.67 16
14 C -0.59 -34.19 7.91 25.60 0.20 -33.99 16
15 H 0.03 1.83 7.00 -2.91 -0.02 1.81 16
16 C -0.01 -0.67 5.33 84.66 0.45 -0.22 16
17 N -0.93 -58.87 13.69 21.45 0.29 -58.58 16
18 Si 1.08 51.64 26.40 68.60 1.81 53.45 16
19 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16
20 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16
21 H -0.25 -10.77 5.59 99.48 0.56 -10.22 16
22 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16
23 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16
24 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16
25 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16
26 H 0.07 1.96 6.49 -2.39 -0.02 1.94 16
27 H 0.02 0.71 8.12 -2.39 -0.02 0.69 16
28 H 0.05 2.44 6.10 -2.39 -0.01 2.43 16
29 H 0.09 2.72 6.34 -2.38 -0.02 2.70 16
30 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16
31 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16
32 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16
33 H 0.07 1.39 6.19 -2.38 -0.01 1.38 16
34 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16
35 H 0.10 2.22 5.83 -2.39 -0.01 2.20 16
36 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16
37 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16
38 H 0.06 3.06 4.84 -2.38 -0.01 3.04 16
39 H 0.25 16.30 8.73 -92.71 -0.81 15.49 16
Total: -1.00 -66.52 290.58 -0.56 -67.07
By element:
Atomic # 1 Polarization: 8.77 SS G_CDS: 0.81 Total: 9.58 kcal
Atomic # 6 Polarization: -23.88 SS G_CDS: 4.78 Total: -19.11 kcal
Atomic # 7 Polarization: -103.05 SS G_CDS: -7.95 Total: -111.00 kcal
Atomic # 14 Polarization: 51.64 SS G_CDS: 1.81 Total: 53.45 kcal
Total: -66.52 -0.56 -67.07 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000249870339.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 50.483 kcal
(2) G-P(sol) polarization free energy of solvation -66.519 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.036 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.556 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.075 kcal
(6) G-S(sol) free energy of system = (1) + (5) -16.591 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds