Wall clock time and date at job start Mon Mar 30 2020 03:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47038 * 2 1 4 4 N 1.46898 * 109.46999 * 180.02562 * 3 2 1 5 5 C 1.48104 * 111.00397 * 65.96856 * 4 3 2 6 6 C 1.46135 * 112.19374 * 156.47861 * 5 4 3 7 7 C 1.54248 * 111.89946 * 60.86855 * 6 5 4 8 8 H 1.08997 * 109.60969 * 41.13245 * 7 6 5 9 9 C 1.53004 * 109.60774 * 161.64041 * 7 6 5 10 10 N 1.44253 * 108.64492 * 281.38471 * 7 6 5 11 11 C 1.48198 * 114.27632 * 93.39604 * 10 7 6 12 12 C 1.44185 * 111.07036 * 303.39786 * 4 3 2 13 13 H 1.08999 * 108.93536 * 96.38554 * 12 4 3 14 14 C 1.50696 * 108.75853 * 337.99318 * 12 4 3 15 15 H 1.08005 * 119.99749 * 351.15837 * 14 12 4 16 16 C 1.37871 * 120.00665 * 171.16120 * 14 12 4 17 17 N 1.31522 * 119.99749 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 120.00326 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47559 * 89.99890 * 18 16 14 20 20 H 1.48508 * 109.46842 * 209.99870 * 18 16 14 21 21 H 1.48499 * 109.47021 * 329.99431 * 18 16 14 22 22 H 1.08996 * 109.46993 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.46879 * 299.99692 * 1 2 3 24 24 H 1.08995 * 109.47047 * 59.99997 * 1 2 3 25 25 H 1.09004 * 109.46719 * 240.00222 * 2 1 3 26 26 H 1.08992 * 109.47642 * 120.00433 * 2 1 3 27 27 H 1.09004 * 109.47185 * 60.00507 * 3 2 1 28 28 H 1.09001 * 109.47717 * 300.00363 * 3 2 1 29 29 H 1.09000 * 108.93150 * 35.78029 * 5 4 3 30 30 H 1.08997 * 108.93600 * 277.18220 * 5 4 3 31 31 H 1.09002 * 108.99348 * 300.23947 * 6 5 4 32 32 H 1.09000 * 108.99395 * 181.48986 * 6 5 4 33 33 H 1.08999 * 109.47230 * 179.15564 * 9 7 6 34 34 H 1.09002 * 109.46527 * 299.15027 * 9 7 6 35 35 H 1.08996 * 109.47186 * 59.15261 * 9 7 6 36 36 H 1.00901 * 111.00319 * 326.93630 * 10 7 6 37 37 H 1.09001 * 108.82011 * 78.98570 * 11 10 7 38 38 H 1.08997 * 108.82335 * 197.39625 * 11 10 7 39 39 H 0.97001 * 119.99890 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0393 0.8796 -1.2637 6 6 5.3953 1.3441 -1.5486 7 6 6.3894 0.9291 -0.4447 8 1 6.1796 -0.0928 -0.1288 9 6 7.8196 1.0210 -0.9806 10 7 6.2340 1.8239 0.6760 11 6 5.2964 1.3399 1.7166 12 6 4.0278 0.7017 1.1223 13 1 4.2618 -0.3126 0.7992 14 6 2.9680 0.6372 2.1917 15 1 2.0665 1.2241 2.0946 16 6 3.1490 -0.1708 3.2940 17 7 4.2466 -0.8859 3.4121 18 14 1.8349 -0.2512 4.6192 19 1 0.8701 -1.3324 4.2947 20 1 2.4714 -0.5331 5.9310 21 1 1.1187 1.0480 4.6855 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8898 27 1 1.6767 1.9563 0.8901 28 1 1.6767 1.9564 -0.8899 29 1 3.3849 1.1738 -2.0842 30 1 4.0458 -0.2079 -1.1911 31 1 5.3883 2.4311 -1.6296 32 1 5.7229 0.9212 -2.4984 33 1 8.5209 0.7418 -0.1944 34 1 7.9345 0.3441 -1.8272 35 1 8.0221 2.0426 -1.3022 36 1 5.9835 2.7510 0.3665 37 1 5.8067 0.5999 2.3331 38 1 5.0052 2.1807 2.3462 39 1 4.3738 -1.4547 4.1874 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249984316.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:41 Heat of formation + Delta-G solvation = 9.964245 kcal Electronic energy + Delta-G solvation = -17329.238150 eV Core-core repulsion = 14885.819688 eV Total energy + Delta-G solvation = -2443.418463 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.01173 -35.77201 -33.19213 -31.94205 -31.19283 -28.52008 -26.90245 -25.00830 -23.13964 -22.43389 -21.27435 -19.79746 -18.49613 -16.33570 -15.64094 -14.90215 -14.60576 -14.26059 -13.74681 -13.59365 -13.10931 -12.95493 -12.43886 -12.18206 -11.95142 -11.78209 -11.30328 -11.24023 -10.96634 -10.92471 -10.78560 -10.59808 -10.56476 -10.11728 -10.02122 -9.93420 -9.71093 -9.34837 -8.83790 -8.48035 -7.39899 -7.02544 -6.09284 -4.07268 3.25423 3.33659 3.35855 4.36208 4.88283 5.20150 5.26286 5.37782 5.71388 5.77084 5.79599 5.88245 5.94763 6.07478 6.12429 6.21436 6.29909 6.39204 6.42685 6.46778 6.51710 6.58833 6.67683 6.71114 6.79329 6.87420 6.92940 7.21358 7.34576 7.50382 7.72609 7.79791 7.91632 8.20031 8.35622 8.44226 8.65841 8.98576 9.52419 10.99304 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.024589 B = 0.011554 C = 0.008515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.451030 B = 2422.915233 C = 3287.551240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.170 4.170 3 C 0.077 3.923 4 N -0.531 5.531 5 C 0.054 3.946 6 C -0.138 4.138 7 C 0.097 3.903 8 H 0.070 0.930 9 C -0.135 4.135 10 N -0.700 5.700 11 C 0.088 3.912 12 C 0.184 3.816 13 H 0.010 0.990 14 C -0.524 4.524 15 H 0.076 0.924 16 C 0.063 3.937 17 N -0.887 5.887 18 Si 0.888 3.112 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.273 1.273 22 H 0.042 0.958 23 H 0.050 0.950 24 H 0.038 0.962 25 H 0.036 0.964 26 H 0.113 0.887 27 H 0.083 0.917 28 H 0.038 0.962 29 H 0.050 0.950 30 H 0.027 0.973 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.045 0.955 35 H 0.047 0.953 36 H 0.330 0.670 37 H 0.080 0.920 38 H 0.050 0.950 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.339 2.566 -7.454 7.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.208 4.208 3 C -0.051 4.051 4 N -0.254 5.254 5 C -0.074 4.074 6 C -0.178 4.178 7 C -0.014 4.014 8 H 0.088 0.912 9 C -0.193 4.193 10 N -0.329 5.329 11 C -0.041 4.041 12 C 0.075 3.925 13 H 0.028 0.972 14 C -0.563 4.563 15 H 0.094 0.906 16 C -0.140 4.140 17 N -0.524 5.524 18 Si 0.716 3.284 19 H -0.208 1.208 20 H -0.212 1.212 21 H -0.198 1.198 22 H 0.061 0.939 23 H 0.069 0.931 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.131 0.869 27 H 0.101 0.899 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.046 0.954 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.147 0.853 37 H 0.098 0.902 38 H 0.068 0.932 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.463 2.662 -6.950 7.457 hybrid contribution -1.861 -0.921 0.226 2.088 sum -1.397 1.741 -6.725 7.085 Atomic orbital electron populations 1.21652 0.97534 1.00298 1.00457 1.22561 0.94576 0.99892 1.03808 1.22026 0.87817 0.95222 1.00006 1.61849 1.06930 1.54564 1.02061 1.21005 0.95712 0.97196 0.93504 1.21320 0.96052 1.01314 0.99073 1.21084 0.92932 0.97666 0.89730 0.91185 1.21800 0.97178 1.00586 0.99754 1.59538 1.53932 1.05140 1.14280 1.22515 0.90588 0.99127 0.91860 1.19556 0.93777 0.91193 0.87924 0.97244 1.21677 1.04134 1.25869 1.04580 0.90647 1.24972 0.95498 0.95548 0.97967 1.69941 1.25468 1.27580 1.29459 0.86647 0.81841 0.78434 0.81499 1.20766 1.21227 1.19805 0.93926 0.93095 0.94280 0.94482 0.86930 0.89930 0.94334 0.93147 0.95445 0.92035 0.92697 0.92617 0.93631 0.93372 0.85271 0.90170 0.93182 0.92881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.91 37.16 0.37 -1.99 16 2 C -0.17 -3.33 5.01 -26.73 -0.13 -3.46 16 3 C 0.08 1.52 4.74 -3.83 -0.02 1.50 16 4 N -0.53 -11.03 4.61 -232.58 -1.07 -12.10 16 5 C 0.05 1.00 4.12 -6.42 -0.03 0.97 16 6 C -0.14 -2.29 4.97 -29.34 -0.15 -2.44 16 7 C 0.10 1.77 2.72 -68.47 -0.19 1.58 16 8 H 0.07 1.47 6.96 -51.93 -0.36 1.11 16 9 C -0.14 -2.05 9.44 37.16 0.35 -1.69 16 10 N -0.70 -13.95 6.18 -106.31 -0.66 -14.61 16 11 C 0.09 2.06 5.78 -2.62 -0.02 2.05 16 12 C 0.18 4.38 0.97 -69.83 -0.07 4.32 16 13 H 0.01 0.27 6.50 -51.93 -0.34 -0.07 16 14 C -0.52 -13.27 5.09 -34.44 -0.18 -13.45 16 15 H 0.08 1.89 4.69 -52.48 -0.25 1.65 16 16 C 0.06 1.65 5.33 -17.82 -0.09 1.56 16 17 N -0.89 -24.49 11.93 55.43 0.66 -23.82 16 18 Si 0.89 20.63 29.54 -169.99 -5.02 15.60 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 22 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.04 0.71 7.10 -51.93 -0.37 0.34 16 26 H 0.11 2.63 5.23 -51.93 -0.27 2.36 16 27 H 0.08 1.73 5.81 -51.93 -0.30 1.43 16 28 H 0.04 0.69 7.91 -51.93 -0.41 0.28 16 29 H 0.05 0.86 7.71 -51.93 -0.40 0.46 16 30 H 0.03 0.55 6.91 -51.93 -0.36 0.19 16 31 H 0.06 1.01 7.62 -51.93 -0.40 0.61 16 32 H 0.05 0.80 8.00 -51.93 -0.42 0.38 16 33 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.33 6.30 8.08 -39.29 -0.32 5.98 16 37 H 0.08 2.12 6.99 -51.93 -0.36 1.76 16 38 H 0.05 1.22 7.97 -51.93 -0.41 0.81 16 39 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 286.30 15.07 4.31 4.31 Total: -1.00 -25.80 286.30 -8.55 -34.36 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -6.63 Total: 7.31 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: -0.14 Total: -11.05 kcal Atomic # 7 Polarization: -49.46 SS G_CDS: -1.07 Total: -50.53 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -25.80 -8.55 -34.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249984316.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.321 kcal (2) G-P(sol) polarization free energy of solvation -25.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds