Wall clock time and date at job start Mon Mar 30 2020 03:21:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.52999 * 109.47038 * 2 1
4 4 N 1.46898 * 109.46999 * 180.02562 * 3 2 1
5 5 C 1.48104 * 111.00397 * 65.96856 * 4 3 2
6 6 C 1.46135 * 112.19374 * 156.47861 * 5 4 3
7 7 C 1.54248 * 111.89946 * 60.86855 * 6 5 4
8 8 H 1.08997 * 109.60969 * 41.13245 * 7 6 5
9 9 C 1.53004 * 109.60774 * 161.64041 * 7 6 5
10 10 N 1.44253 * 108.64492 * 281.38471 * 7 6 5
11 11 C 1.48198 * 114.27632 * 93.39604 * 10 7 6
12 12 C 1.44185 * 111.07036 * 303.39786 * 4 3 2
13 13 H 1.08999 * 108.93536 * 96.38554 * 12 4 3
14 14 C 1.50696 * 108.75853 * 337.99318 * 12 4 3
15 15 H 1.08005 * 119.99749 * 351.15837 * 14 12 4
16 16 C 1.37871 * 120.00665 * 171.16120 * 14 12 4
17 17 N 1.31522 * 119.99749 * 359.97438 * 16 14 12
18 18 Si 1.86800 * 120.00326 * 180.02562 * 16 14 12
19 19 H 1.48497 * 109.47559 * 89.99890 * 18 16 14
20 20 H 1.48508 * 109.46842 * 209.99870 * 18 16 14
21 21 H 1.48499 * 109.47021 * 329.99431 * 18 16 14
22 22 H 1.08996 * 109.46993 * 179.97438 * 1 2 3
23 23 H 1.08995 * 109.46879 * 299.99692 * 1 2 3
24 24 H 1.08995 * 109.47047 * 59.99997 * 1 2 3
25 25 H 1.09004 * 109.46719 * 240.00222 * 2 1 3
26 26 H 1.08992 * 109.47642 * 120.00433 * 2 1 3
27 27 H 1.09004 * 109.47185 * 60.00507 * 3 2 1
28 28 H 1.09001 * 109.47717 * 300.00363 * 3 2 1
29 29 H 1.09000 * 108.93150 * 35.78029 * 5 4 3
30 30 H 1.08997 * 108.93600 * 277.18220 * 5 4 3
31 31 H 1.09002 * 108.99348 * 300.23947 * 6 5 4
32 32 H 1.09000 * 108.99395 * 181.48986 * 6 5 4
33 33 H 1.08999 * 109.47230 * 179.15564 * 9 7 6
34 34 H 1.09002 * 109.46527 * 299.15027 * 9 7 6
35 35 H 1.08996 * 109.47186 * 59.15261 * 9 7 6
36 36 H 1.00901 * 111.00319 * 326.93630 * 10 7 6
37 37 H 1.09001 * 108.82011 * 78.98570 * 11 10 7
38 38 H 1.08997 * 108.82335 * 197.39625 * 11 10 7
39 39 H 0.97001 * 119.99890 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 3.5090 1.4425 -0.0006
5 6 4.0393 0.8796 -1.2637
6 6 5.3953 1.3441 -1.5486
7 6 6.3894 0.9291 -0.4447
8 1 6.1796 -0.0928 -0.1288
9 6 7.8196 1.0210 -0.9806
10 7 6.2340 1.8239 0.6760
11 6 5.2964 1.3399 1.7166
12 6 4.0278 0.7017 1.1223
13 1 4.2618 -0.3126 0.7992
14 6 2.9680 0.6372 2.1917
15 1 2.0665 1.2241 2.0946
16 6 3.1490 -0.1708 3.2940
17 7 4.2466 -0.8859 3.4121
18 14 1.8349 -0.2512 4.6192
19 1 0.8701 -1.3324 4.2947
20 1 2.4714 -0.5331 5.9310
21 1 1.1187 1.0480 4.6855
22 1 -0.3633 -1.0276 -0.0005
23 1 -0.3633 0.5138 0.8900
24 1 -0.3633 0.5138 -0.8899
25 1 1.8933 -0.5138 -0.8901
26 1 1.8934 -0.5138 0.8898
27 1 1.6767 1.9563 0.8901
28 1 1.6767 1.9564 -0.8899
29 1 3.3849 1.1738 -2.0842
30 1 4.0458 -0.2079 -1.1911
31 1 5.3883 2.4311 -1.6296
32 1 5.7229 0.9212 -2.4984
33 1 8.5209 0.7418 -0.1944
34 1 7.9345 0.3441 -1.8272
35 1 8.0221 2.0426 -1.3022
36 1 5.9835 2.7510 0.3665
37 1 5.8067 0.5999 2.3331
38 1 5.0052 2.1807 2.3462
39 1 4.3738 -1.4547 4.1874
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000249984316.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:21:41
Heat of formation + Delta-G solvation = 9.964245 kcal
Electronic energy + Delta-G solvation = -17329.238150 eV
Core-core repulsion = 14885.819688 eV
Total energy + Delta-G solvation = -2443.418463 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-39.01173 -35.77201 -33.19213 -31.94205 -31.19283 -28.52008 -26.90245 -25.00830
-23.13964 -22.43389 -21.27435 -19.79746 -18.49613 -16.33570 -15.64094 -14.90215
-14.60576 -14.26059 -13.74681 -13.59365 -13.10931 -12.95493 -12.43886 -12.18206
-11.95142 -11.78209 -11.30328 -11.24023 -10.96634 -10.92471 -10.78560 -10.59808
-10.56476 -10.11728 -10.02122 -9.93420 -9.71093 -9.34837 -8.83790 -8.48035
-7.39899 -7.02544 -6.09284 -4.07268 3.25423 3.33659 3.35855 4.36208
4.88283 5.20150 5.26286 5.37782 5.71388 5.77084 5.79599 5.88245
5.94763 6.07478 6.12429 6.21436 6.29909 6.39204 6.42685 6.46778
6.51710 6.58833 6.67683 6.71114 6.79329 6.87420 6.92940 7.21358
7.34576 7.50382 7.72609 7.79791 7.91632 8.20031 8.35622 8.44226
8.65841 8.98576 9.52419 10.99304
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.024589 B = 0.011554 C = 0.008515
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1138.451030 B = 2422.915233 C = 3287.551240
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C -0.170 4.170
3 C 0.077 3.923
4 N -0.531 5.531
5 C 0.054 3.946
6 C -0.138 4.138
7 C 0.097 3.903
8 H 0.070 0.930
9 C -0.135 4.135
10 N -0.700 5.700
11 C 0.088 3.912
12 C 0.184 3.816
13 H 0.010 0.990
14 C -0.524 4.524
15 H 0.076 0.924
16 C 0.063 3.937
17 N -0.887 5.887
18 Si 0.888 3.112
19 H -0.281 1.281
20 H -0.286 1.286
21 H -0.273 1.273
22 H 0.042 0.958
23 H 0.050 0.950
24 H 0.038 0.962
25 H 0.036 0.964
26 H 0.113 0.887
27 H 0.083 0.917
28 H 0.038 0.962
29 H 0.050 0.950
30 H 0.027 0.973
31 H 0.061 0.939
32 H 0.054 0.946
33 H 0.055 0.945
34 H 0.045 0.955
35 H 0.047 0.953
36 H 0.330 0.670
37 H 0.080 0.920
38 H 0.050 0.950
39 H 0.261 0.739
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.339 2.566 -7.454 7.891
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.208 4.208
3 C -0.051 4.051
4 N -0.254 5.254
5 C -0.074 4.074
6 C -0.178 4.178
7 C -0.014 4.014
8 H 0.088 0.912
9 C -0.193 4.193
10 N -0.329 5.329
11 C -0.041 4.041
12 C 0.075 3.925
13 H 0.028 0.972
14 C -0.563 4.563
15 H 0.094 0.906
16 C -0.140 4.140
17 N -0.524 5.524
18 Si 0.716 3.284
19 H -0.208 1.208
20 H -0.212 1.212
21 H -0.198 1.198
22 H 0.061 0.939
23 H 0.069 0.931
24 H 0.057 0.943
25 H 0.055 0.945
26 H 0.131 0.869
27 H 0.101 0.899
28 H 0.057 0.943
29 H 0.069 0.931
30 H 0.046 0.954
31 H 0.080 0.920
32 H 0.073 0.927
33 H 0.074 0.926
34 H 0.064 0.936
35 H 0.066 0.934
36 H 0.147 0.853
37 H 0.098 0.902
38 H 0.068 0.932
39 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges 0.463 2.662 -6.950 7.457
hybrid contribution -1.861 -0.921 0.226 2.088
sum -1.397 1.741 -6.725 7.085
Atomic orbital electron populations
1.21652 0.97534 1.00298 1.00457 1.22561 0.94576 0.99892 1.03808
1.22026 0.87817 0.95222 1.00006 1.61849 1.06930 1.54564 1.02061
1.21005 0.95712 0.97196 0.93504 1.21320 0.96052 1.01314 0.99073
1.21084 0.92932 0.97666 0.89730 0.91185 1.21800 0.97178 1.00586
0.99754 1.59538 1.53932 1.05140 1.14280 1.22515 0.90588 0.99127
0.91860 1.19556 0.93777 0.91193 0.87924 0.97244 1.21677 1.04134
1.25869 1.04580 0.90647 1.24972 0.95498 0.95548 0.97967 1.69941
1.25468 1.27580 1.29459 0.86647 0.81841 0.78434 0.81499 1.20766
1.21227 1.19805 0.93926 0.93095 0.94280 0.94482 0.86930 0.89930
0.94334 0.93147 0.95445 0.92035 0.92697 0.92617 0.93631 0.93372
0.85271 0.90170 0.93182 0.92881
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.36 9.91 37.16 0.37 -1.99 16
2 C -0.17 -3.33 5.01 -26.73 -0.13 -3.46 16
3 C 0.08 1.52 4.74 -3.83 -0.02 1.50 16
4 N -0.53 -11.03 4.61 -232.58 -1.07 -12.10 16
5 C 0.05 1.00 4.12 -6.42 -0.03 0.97 16
6 C -0.14 -2.29 4.97 -29.34 -0.15 -2.44 16
7 C 0.10 1.77 2.72 -68.47 -0.19 1.58 16
8 H 0.07 1.47 6.96 -51.93 -0.36 1.11 16
9 C -0.14 -2.05 9.44 37.16 0.35 -1.69 16
10 N -0.70 -13.95 6.18 -106.31 -0.66 -14.61 16
11 C 0.09 2.06 5.78 -2.62 -0.02 2.05 16
12 C 0.18 4.38 0.97 -69.83 -0.07 4.32 16
13 H 0.01 0.27 6.50 -51.93 -0.34 -0.07 16
14 C -0.52 -13.27 5.09 -34.44 -0.18 -13.45 16
15 H 0.08 1.89 4.69 -52.48 -0.25 1.65 16
16 C 0.06 1.65 5.33 -17.82 -0.09 1.56 16
17 N -0.89 -24.49 11.93 55.43 0.66 -23.82 16
18 Si 0.89 20.63 29.54 -169.99 -5.02 15.60 16
19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16
20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16
21 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16
22 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16
23 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16
24 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16
25 H 0.04 0.71 7.10 -51.93 -0.37 0.34 16
26 H 0.11 2.63 5.23 -51.93 -0.27 2.36 16
27 H 0.08 1.73 5.81 -51.93 -0.30 1.43 16
28 H 0.04 0.69 7.91 -51.93 -0.41 0.28 16
29 H 0.05 0.86 7.71 -51.93 -0.40 0.46 16
30 H 0.03 0.55 6.91 -51.93 -0.36 0.19 16
31 H 0.06 1.01 7.62 -51.93 -0.40 0.61 16
32 H 0.05 0.80 8.00 -51.93 -0.42 0.38 16
33 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16
34 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16
35 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16
36 H 0.33 6.30 8.08 -39.29 -0.32 5.98 16
37 H 0.08 2.12 6.99 -51.93 -0.36 1.76 16
38 H 0.05 1.22 7.97 -51.93 -0.41 0.81 16
39 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16
LS Contribution 286.30 15.07 4.31 4.31
Total: -1.00 -25.80 286.30 -8.55 -34.36
By element:
Atomic # 1 Polarization: 13.94 SS G_CDS: -6.63 Total: 7.31 kcal
Atomic # 6 Polarization: -10.91 SS G_CDS: -0.14 Total: -11.05 kcal
Atomic # 7 Polarization: -49.46 SS G_CDS: -1.07 Total: -50.53 kcal
Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.60 kcal
Total LS contribution 4.31 Total: 4.31 kcal
Total: -25.80 -8.55 -34.36 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000249984316.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 44.321 kcal
(2) G-P(sol) polarization free energy of solvation -25.804 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.517 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.553 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.357 kcal
(6) G-S(sol) free energy of system = (1) + (5) 9.964 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds